PDB Chemical Component LNB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LNB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O20 |
1.236 |
1.342 |
| O20 |
HO20 |
0.949 |
0.967 |
| C2 |
C1 |
1.512 |
1.507 |
| O19 |
C1 |
1.240 |
1.208 |
| C3 |
C2 |
1.518 |
1.530 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.091 |
| C4 |
C3 |
1.518 |
1.530 |
| C3 |
H3 |
1.101 |
1.090 |
| C3 |
H3A |
1.100 |
1.090 |
| C5 |
C4 |
1.524 |
1.531 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C6 |
C5 |
1.503 |
1.530 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.089 |
| C7 |
C6 |
1.513 |
1.529 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.101 |
1.089 |
| C7 |
C8 |
1.529 |
1.531 |
| C7 |
H7 |
1.100 |
1.091 |
| C7 |
H7A |
1.100 |
1.090 |
| C9 |
C8 |
1.501 |
1.507 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| C10 |
C9 |
1.320 |
1.310 |
| C9 |
H9 |
1.080 |
1.080 |
| C11 |
C10 |
1.518 |
1.507 |
| C10 |
H10 |
1.081 |
1.080 |
| C12 |
C11 |
1.518 |
1.507 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| N21 |
C12 |
1.311 |
1.480 |
| C13 |
C12 |
1.340 |
1.309 |
| O22 |
N21 |
1.174 |
1.218 |
| N21 |
O23 |
1.192 |
1.218 |
| C13 |
C14 |
1.512 |
1.508 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C15 |
1.529 |
1.530 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.090 |
| C16 |
C15 |
1.514 |
1.530 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.090 |
| C16 |
C17 |
1.530 |
1.530 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C18 |
C17 |
1.508 |
1.530 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C18 |
H18B |
1.100 |
1.090 |
Bond Angles for LNB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
O20 |
HO20 |
109.5 |
117.0 |
| C3 |
C2 |
H2 |
109.0 |
109.5 |
| C3 |
C2 |
H2A |
108.6 |
109.5 |
| H2 |
C2 |
H2A |
110.7 |
109.5 |
| C4 |
C3 |
H3 |
107.9 |
109.5 |
| C4 |
C3 |
H3A |
106.8 |
109.5 |
| H3 |
C3 |
H3A |
113.3 |
109.5 |
| C5 |
C4 |
H4 |
108.3 |
109.5 |
| C5 |
C4 |
H4A |
107.5 |
109.4 |
| H4 |
C4 |
H4A |
112.2 |
109.4 |
| C6 |
C5 |
H5 |
108.4 |
109.5 |
| C6 |
C5 |
H5A |
107.7 |
109.5 |
| H5 |
C5 |
H5A |
112.0 |
109.5 |
| C7 |
C6 |
H6 |
109.2 |
109.4 |
| C7 |
C6 |
H6A |
109.0 |
109.5 |
| H6 |
C6 |
H6A |
110.1 |
109.5 |
| C8 |
C7 |
H7 |
108.4 |
109.4 |
| C8 |
C7 |
H7A |
107.7 |
109.4 |
| C7 |
C8 |
H8 |
108.8 |
109.4 |
| C7 |
C8 |
H8A |
108.3 |
109.4 |
| H7 |
C7 |
H7A |
112.0 |
109.5 |
| C9 |
C8 |
H8 |
108.7 |
109.5 |
| C9 |
C8 |
H8A |
108.3 |
109.5 |
| H8 |
C8 |
H8A |
111.2 |
109.5 |
| C10 |
C9 |
H9 |
122.0 |
120.0 |
| C11 |
C10 |
H10 |
120.6 |
120.0 |
| C12 |
C11 |
H11 |
107.9 |
109.5 |
| C12 |
C11 |
H11A |
106.8 |
109.5 |
| H11 |
C11 |
H11A |
113.3 |
109.5 |
| O22 |
N21 |
O23 |
116.6 |
120.0 |
| C14 |
C13 |
H13 |
117.3 |
119.9 |
| C13 |
C14 |
C15 |
114.4 |
109.5 |
| C13 |
C14 |
H14 |
107.9 |
109.5 |
| C13 |
C14 |
H14A |
106.8 |
109.4 |
| C15 |
C14 |
H14 |
107.9 |
109.5 |
| C15 |
C14 |
H14A |
106.7 |
109.4 |
| C14 |
C15 |
H15 |
108.1 |
109.5 |
| C14 |
C15 |
H15A |
107.2 |
109.4 |
| H14 |
C14 |
H14A |
113.4 |
109.5 |
| C16 |
C15 |
H15 |
108.1 |
109.4 |
| C16 |
C15 |
H15A |
107.2 |
109.5 |
| H15 |
C15 |
H15A |
112.7 |
109.5 |
| C17 |
C16 |
H16 |
108.4 |
109.5 |
| C17 |
C16 |
H16A |
107.6 |
109.5 |
| C16 |
C17 |
H17 |
108.4 |
109.5 |
| C16 |
C17 |
H17A |
107.6 |
109.5 |
| H16 |
C16 |
H16A |
112.1 |
109.4 |
| C18 |
C17 |
H17 |
108.4 |
109.5 |
| C18 |
C17 |
H17A |
107.6 |
109.5 |
| H17 |
C17 |
H17A |
112.1 |
109.4 |
| H18 |
C18 |
H18A |
109.4 |
109.5 |
| H18 |
C18 |
H18B |
109.4 |
109.5 |
| H18A |
C18 |
H18B |
109.5 |
109.5 |
Torsion Angles for LNB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
O20 |
HO20 |
180.0 |
180.0 |
| O19 |
C1 |
O20 |
HO20 |
360.0 |
360.0 |
| H2 |
C2 |
C3 |
H2A |
120.6 |
120.0 |
| C3 |
C2 |
H2 |
H2A |
240.6 |
240.0 |
| C3 |
C2 |
H2A |
H2 |
119.6 |
120.1 |
| C4 |
C3 |
C2 |
H2 |
10.6 |
60.0 |
| C4 |
C3 |
C2 |
H2A |
250.0 |
300.0 |
| H3 |
C3 |
C4 |
H3A |
122.1 |
120.0 |
| H3 |
C3 |
C2 |
H2 |
130.6 |
180.0 |
| H3 |
C3 |
C2 |
H2A |
10.0 |
60.0 |
| C4 |
C3 |
H3 |
H3A |
242.0 |
240.0 |
| H3A |
C3 |
C2 |
H2 |
252.8 |
300.0 |
| H3A |
C3 |
C2 |
H2A |
132.2 |
180.0 |
| C4 |
C3 |
H3A |
H3 |
118.7 |
120.1 |
| C5 |
C4 |
C3 |
H3 |
93.3 |
60.0 |
| C5 |
C4 |
C3 |
H3A |
331.2 |
300.0 |
| H4 |
C4 |
C5 |
H4A |
121.5 |
119.9 |
| H4 |
C4 |
C3 |
H3 |
213.3 |
180.0 |
| H4 |
C4 |
C3 |
H3A |
91.2 |
60.0 |
| C5 |
C4 |
H4 |
H4A |
241.4 |
240.1 |
| H4A |
C4 |
C3 |
H3 |
334.8 |
300.0 |
| H4A |
C4 |
C3 |
H3A |
212.7 |
180.0 |
| C5 |
C4 |
H4A |
H4 |
119.1 |
119.9 |
| C6 |
C5 |
C4 |
H4 |
229.5 |
60.0 |
| C6 |
C5 |
C4 |
H4A |
108.0 |
300.0 |
| H5 |
C5 |
C6 |
H5A |
121.4 |
120.1 |
| H5 |
C5 |
C4 |
H4 |
349.5 |
179.9 |
| H5 |
C5 |
C4 |
H4A |
228.0 |
60.0 |
| C6 |
C5 |
H5 |
H5A |
241.3 |
239.9 |
| H5A |
C5 |
C4 |
H4 |
110.8 |
300.0 |
| H5A |
C5 |
C4 |
H4A |
349.3 |
180.0 |
| C6 |
C5 |
H5A |
H5 |
119.2 |
120.1 |
| C7 |
C6 |
C5 |
H5 |
134.5 |
60.1 |
| C7 |
C6 |
C5 |
H5A |
13.1 |
300.0 |
| H6 |
C6 |
C7 |
H6A |
120.3 |
120.0 |
| H6 |
C6 |
C5 |
H5 |
254.5 |
180.0 |
| H6 |
C6 |
C5 |
H5A |
133.1 |
59.9 |
| C7 |
C6 |
H6 |
H6A |
240.3 |
240.0 |
| H6A |
C6 |
C5 |
H5 |
14.8 |
300.0 |
| H6A |
C6 |
C5 |
H5A |
253.5 |
179.9 |
| C7 |
C6 |
H6A |
H6 |
119.8 |
120.0 |
| C8 |
C7 |
C6 |
H6 |
2.7 |
60.0 |
| C8 |
C7 |
C6 |
H6A |
242.4 |
300.1 |
| H7 |
C7 |
C8 |
H7A |
121.4 |
119.9 |
| C9 |
C8 |
C7 |
H8 |
240.0 |
240.0 |
| C9 |
C8 |
C7 |
H8A |
119.1 |
120.0 |
| H8 |
C8 |
C7 |
H8A |
239.1 |
240.0 |
| H7 |
C7 |
C6 |
H6 |
122.7 |
180.0 |
| H7 |
C7 |
C6 |
H6A |
2.4 |
60.0 |
| C8 |
C7 |
H7 |
H7A |
241.3 |
240.1 |
| H7 |
C7 |
C8 |
H8 |
193.6 |
180.0 |
| H7 |
C7 |
C8 |
H8A |
314.5 |
299.9 |
| H7A |
C7 |
C6 |
H6 |
244.1 |
300.0 |
| H7A |
C7 |
C6 |
H6A |
123.8 |
180.0 |
| C8 |
C7 |
H7A |
H7 |
119.1 |
119.9 |
| H7A |
C7 |
C8 |
H8 |
72.2 |
60.0 |
| H7A |
C7 |
C8 |
H8A |
193.2 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
73.6 |
60.0 |
| C9 |
C8 |
C7 |
H7A |
312.2 |
300.0 |
| C7 |
C8 |
C9 |
H8 |
120.0 |
120.0 |
| C7 |
C8 |
C9 |
H8A |
240.9 |
240.0 |
| H8 |
C8 |
C9 |
H8A |
120.9 |
120.0 |
| H8 |
C8 |
C7 |
H7 |
193.6 |
180.0 |
| H8 |
C8 |
C7 |
H7A |
72.2 |
60.0 |
| C7 |
C8 |
H8 |
H8A |
119.1 |
119.9 |
| C9 |
C8 |
H8 |
H8A |
240.9 |
239.9 |
| H8A |
C8 |
C7 |
H7 |
314.5 |
299.9 |
| H8A |
C8 |
C7 |
H7A |
193.2 |
180.0 |
| C7 |
C8 |
H8A |
H8 |
240.6 |
240.1 |
| C9 |
C8 |
H8A |
H8 |
119.4 |
120.0 |
| C10 |
C9 |
C8 |
H8 |
151.4 |
8.0 |
| C10 |
C9 |
C8 |
H8A |
30.5 |
247.9 |
| H9 |
C9 |
C8 |
H8 |
331.5 |
188.0 |
| H9 |
C9 |
C8 |
H8A |
210.6 |
67.9 |
| C11 |
C10 |
C9 |
H9 |
180.0 |
186.3 |
| H10 |
C10 |
C9 |
H9 |
360.0 |
6.3 |
| C12 |
C11 |
C10 |
H10 |
349.3 |
307.0 |
| H11 |
C11 |
C12 |
H11A |
122.2 |
120.0 |
| H11 |
C11 |
C10 |
H10 |
109.3 |
67.0 |
| C12 |
C11 |
H11 |
H11A |
241.9 |
240.0 |
| H11A |
C11 |
C10 |
H10 |
231.4 |
187.0 |
| C12 |
C11 |
H11A |
H11 |
118.7 |
120.0 |
| N21 |
C12 |
C11 |
H11 |
253.9 |
147.1 |
| N21 |
C12 |
C11 |
H11A |
131.8 |
27.1 |
| C13 |
C12 |
C11 |
H11 |
74.3 |
327.1 |
| C13 |
C12 |
C11 |
H11A |
312.1 |
207.1 |
| C15 |
C14 |
C13 |
H14 |
240.0 |
240.0 |
| C15 |
C14 |
C13 |
H14A |
117.8 |
119.9 |
| C13 |
C14 |
C15 |
H15 |
68.7 |
300.0 |
| C13 |
C14 |
C15 |
H15A |
190.5 |
60.1 |
| H14 |
C14 |
C13 |
H14A |
237.8 |
240.0 |
| H13 |
C13 |
C14 |
C15 |
106.9 |
302.0 |
| H13 |
C13 |
C14 |
H14 |
226.9 |
62.1 |
| H13 |
C13 |
C14 |
H14A |
349.1 |
182.1 |
| C15 |
C14 |
C13 |
H13 |
106.9 |
302.0 |
| C13 |
C14 |
C15 |
H14 |
120.0 |
120.0 |
| C13 |
C14 |
C15 |
H14A |
242.2 |
240.1 |
| H14 |
C14 |
C15 |
H14A |
122.1 |
120.1 |
| C16 |
C15 |
C14 |
H15 |
240.0 |
240.0 |
| C16 |
C15 |
C14 |
H15A |
118.2 |
120.0 |
| H15 |
C15 |
C14 |
H15A |
238.2 |
239.9 |
| H14 |
C14 |
C13 |
H13 |
226.9 |
62.1 |
| C13 |
C14 |
H14 |
C15 |
236.0 |
240.0 |
| C13 |
C14 |
H14 |
H14A |
118.0 |
120.0 |
| C15 |
C14 |
H14 |
H14A |
242.0 |
240.0 |
| H14 |
C14 |
C15 |
H15 |
308.7 |
180.0 |
| H14 |
C14 |
C15 |
H15A |
70.5 |
300.1 |
| H14A |
C14 |
C13 |
H13 |
349.1 |
182.1 |
| C13 |
C14 |
H14A |
C15 |
122.7 |
119.9 |
| C13 |
C14 |
H14A |
H14 |
241.4 |
240.0 |
| C15 |
C14 |
H14A |
H14 |
118.6 |
120.1 |
| H14A |
C14 |
C15 |
H15 |
186.5 |
59.9 |
| H14A |
C14 |
C15 |
H15A |
308.3 |
180.0 |
| C16 |
C15 |
C14 |
H14 |
188.7 |
60.0 |
| C16 |
C15 |
C14 |
H14A |
66.5 |
300.0 |
| C14 |
C15 |
C16 |
H15 |
120.0 |
120.0 |
| C14 |
C15 |
C16 |
H15A |
241.8 |
240.0 |
| H15 |
C15 |
C16 |
H15A |
121.8 |
120.0 |
| H15 |
C15 |
C14 |
H14 |
308.7 |
180.0 |
| H15 |
C15 |
C14 |
H14A |
186.5 |
59.9 |
| C14 |
C15 |
H15 |
H15A |
118.3 |
120.0 |
| C16 |
C15 |
H15 |
H15A |
241.7 |
240.0 |
| H15A |
C15 |
C14 |
H14 |
70.5 |
300.1 |
| H15A |
C15 |
C14 |
H14A |
308.3 |
180.0 |
| C14 |
C15 |
H15A |
H15 |
241.1 |
239.9 |
| C16 |
C15 |
H15A |
H15 |
118.9 |
120.0 |
| C17 |
C16 |
C15 |
H15 |
5.4 |
60.0 |
| C17 |
C16 |
C15 |
H15A |
243.6 |
300.0 |
| H16 |
C16 |
C17 |
H16A |
121.4 |
119.9 |
| C18 |
C17 |
C16 |
H17 |
240.0 |
240.0 |
| C18 |
C17 |
C16 |
H17A |
118.6 |
120.0 |
| H17 |
C17 |
C16 |
H17A |
238.6 |
240.1 |
| H16 |
C16 |
C15 |
H15 |
125.4 |
180.0 |
| H16 |
C16 |
C15 |
H15A |
3.6 |
60.0 |
| C17 |
C16 |
H16 |
H16A |
241.4 |
240.1 |
| H16 |
C16 |
C17 |
H17 |
209.7 |
180.0 |
| H16 |
C16 |
C17 |
H17A |
331.2 |
299.9 |
| H16A |
C16 |
C15 |
H15 |
246.8 |
300.0 |
| H16A |
C16 |
C15 |
H15A |
125.0 |
179.9 |
| C17 |
C16 |
H16A |
H16 |
119.1 |
119.9 |
| H16A |
C16 |
C17 |
H17 |
88.3 |
60.1 |
| H16A |
C16 |
C17 |
H17A |
209.7 |
180.0 |
| C18 |
C17 |
C16 |
H16 |
89.7 |
60.0 |
| C18 |
C17 |
C16 |
H16A |
328.3 |
300.0 |
| C16 |
C17 |
C18 |
H17 |
120.0 |
120.0 |
| C16 |
C17 |
C18 |
H17A |
241.5 |
240.0 |
| H17 |
C17 |
C18 |
H17A |
121.5 |
120.0 |
| H17 |
C17 |
C16 |
H16 |
209.7 |
180.0 |
| H17 |
C17 |
C16 |
H16A |
88.3 |
60.1 |
| C16 |
C17 |
H17 |
H17A |
118.6 |
119.9 |
| C18 |
C17 |
H17 |
H17A |
241.4 |
240.0 |
| H17A |
C17 |
C16 |
H16 |
331.2 |
299.9 |
| H17A |
C17 |
C16 |
H16A |
209.7 |
180.0 |
| C16 |
C17 |
H17A |
H17 |
240.9 |
240.1 |
| C18 |
C17 |
H17A |
H17 |
119.1 |
120.0 |
| H18 |
C18 |
C17 |
H17 |
90.6 |
60.0 |
| H18 |
C18 |
C17 |
H17A |
329.2 |
300.0 |
| H18A |
C18 |
H18 |
H18B |
120.0 |
120.0 |
| H18A |
C18 |
C17 |
H17 |
210.6 |
180.0 |
| H18A |
C18 |
C17 |
H17A |
89.2 |
60.0 |
| H18 |
C18 |
H18A |
H18B |
240.1 |
239.9 |
| H18B |
C18 |
C17 |
H17 |
330.6 |
300.0 |
| H18B |
C18 |
C17 |
H17A |
209.2 |
180.0 |
| H18 |
C18 |
H18B |
H18A |
119.9 |
120.1 |