PDB Chemical Component LN5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LN5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CH1 |
CT1 |
1.520 |
1.530 |
| CZ |
CH1 |
1.515 |
1.507 |
| CZ |
NH2 |
1.420 |
1.293 |
| NH2 |
H1H2 |
1.000 |
0.971 |
| NE |
CZ |
1.460 |
1.371 |
| CD |
NE |
1.476 |
1.465 |
| CG |
CD |
1.544 |
1.529 |
| CB |
CG |
1.557 |
1.530 |
| CA |
C |
1.530 |
1.507 |
| CA |
CB |
1.537 |
1.531 |
| C |
OA1 |
1.251 |
1.343 |
| OA2 |
C |
1.252 |
1.209 |
| N |
CA |
1.471 |
1.469 |
| CT1 |
H1T1 |
1.100 |
1.090 |
| CT1 |
H2T1 |
1.100 |
1.090 |
| CT1 |
H3T1 |
1.100 |
1.090 |
| CH1 |
H1H1 |
1.100 |
1.090 |
| CH1 |
H2H1 |
1.100 |
1.090 |
| NE |
HNE |
1.000 |
0.970 |
| CD |
H1D |
1.100 |
1.090 |
| CD |
H2D |
1.100 |
1.089 |
| CG |
H1G |
1.100 |
1.090 |
| CG |
H2G |
1.100 |
1.090 |
| CB |
H1B |
1.100 |
1.090 |
| CB |
H2B |
1.100 |
1.090 |
| CA |
HA |
1.101 |
1.089 |
| OA1 |
H15 |
0.949 |
0.967 |
| N |
H1N |
1.000 |
1.009 |
| N |
H2N |
1.000 |
1.009 |
Bond Angles for LN5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CH1 |
CT1 |
H1T1 |
109.5 |
109.5 |
| CH1 |
CT1 |
H2T1 |
109.5 |
109.4 |
| CH1 |
CT1 |
H3T1 |
109.5 |
109.5 |
| CZ |
CH1 |
H1H1 |
108.0 |
109.5 |
| CZ |
CH1 |
H2H1 |
107.0 |
109.5 |
| CZ |
NH2 |
H1H2 |
105.9 |
120.0 |
| CD |
NE |
HNE |
120.9 |
120.0 |
| CG |
CD |
H1D |
109.4 |
109.5 |
| CG |
CD |
H2D |
109.4 |
109.5 |
| CB |
CG |
H1G |
108.7 |
109.5 |
| CB |
CG |
H2G |
108.2 |
109.5 |
| CA |
C |
OA1 |
117.0 |
120.0 |
| C |
CA |
HA |
109.4 |
109.5 |
| CA |
CB |
H1B |
108.3 |
109.5 |
| CA |
CB |
H2B |
107.5 |
109.5 |
| OA2 |
C |
OA1 |
126.0 |
120.0 |
| C |
OA1 |
H15 |
109.5 |
117.0 |
| N |
CA |
HA |
110.3 |
109.5 |
| H1T1 |
CT1 |
H2T1 |
109.5 |
109.5 |
| H1T1 |
CT1 |
H3T1 |
109.5 |
109.5 |
| H2T1 |
CT1 |
H3T1 |
109.5 |
109.5 |
| H1H1 |
CH1 |
H2H1 |
113.0 |
109.5 |
| H1D |
CD |
H2D |
109.6 |
109.5 |
| H1G |
CG |
H2G |
111.4 |
109.4 |
| H1B |
CB |
H2B |
112.3 |
109.5 |
| H1N |
N |
H2N |
109.5 |
111.0 |
Torsion Angles for LN5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1T1 |
CT1 |
CH1 |
H2T1 |
240.0 |
240.0 |
| H1T1 |
CT1 |
CH1 |
H3T1 |
120.0 |
120.1 |
| H2T1 |
CT1 |
CH1 |
H3T1 |
240.0 |
240.0 |
| CZ |
CH1 |
CT1 |
H1T1 |
264.0 |
180.0 |
| CZ |
CH1 |
CT1 |
H2T1 |
24.0 |
300.0 |
| CZ |
CH1 |
CT1 |
H3T1 |
144.0 |
59.9 |
| H1H1 |
CH1 |
CZ |
H2H1 |
122.0 |
120.0 |
| NH2 |
CZ |
CH1 |
H1H1 |
227.9 |
240.0 |
| NH2 |
CZ |
CH1 |
H2H1 |
105.9 |
120.0 |
| NE |
CZ |
CH1 |
H1H1 |
337.0 |
60.0 |
| NE |
CZ |
CH1 |
H2H1 |
215.0 |
300.0 |
| NE |
CZ |
NH2 |
H1H2 |
62.2 |
0.0 |
| CG |
CD |
NE |
HNE |
351.9 |
0.0 |
| H1D |
CD |
CG |
H2D |
120.0 |
120.1 |
| CB |
CG |
CD |
H1D |
63.0 |
60.1 |
| CB |
CG |
CD |
H2D |
302.9 |
300.0 |
| H1G |
CG |
CB |
H2G |
121.0 |
119.9 |
| C |
CA |
CB |
H1B |
308.4 |
55.1 |
| C |
CA |
CB |
H2B |
186.9 |
295.0 |
| OA2 |
C |
CA |
OA1 |
181.4 |
180.1 |
| CA |
C |
OA1 |
H15 |
181.6 |
180.0 |
| N |
CA |
C |
HA |
120.3 |
120.1 |
| CA |
CB |
CG |
H1G |
56.7 |
60.0 |
| CA |
CB |
CG |
H2G |
295.6 |
300.1 |
| H1B |
CB |
CA |
H2B |
121.6 |
120.1 |
| OA1 |
C |
CA |
HA |
32.4 |
39.9 |
| CA |
C |
OA2 |
OA1 |
178.4 |
179.9 |
| OA2 |
C |
CA |
HA |
213.8 |
220.0 |
| OA2 |
C |
OA1 |
H15 |
0.0 |
359.9 |
| C |
CA |
N |
HA |
240.3 |
239.9 |
| N |
CA |
CB |
H1B |
68.6 |
175.0 |
| N |
CA |
CB |
H2B |
307.0 |
55.0 |
| CH1 |
CT1 |
H1T1 |
H2T1 |
120.0 |
119.9 |
| CH1 |
CT1 |
H1T1 |
H3T1 |
240.0 |
240.0 |
| H2T1 |
CT1 |
H1T1 |
H3T1 |
120.0 |
120.0 |
| CH1 |
CT1 |
H2T1 |
H1T1 |
240.0 |
240.0 |
| CH1 |
CT1 |
H2T1 |
H3T1 |
120.0 |
120.0 |
| H1T1 |
CT1 |
H2T1 |
H3T1 |
240.0 |
239.9 |
| CH1 |
CT1 |
H3T1 |
H1T1 |
120.0 |
120.0 |
| CH1 |
CT1 |
H3T1 |
H2T1 |
240.0 |
240.1 |
| H1T1 |
CT1 |
H3T1 |
H2T1 |
120.0 |
120.0 |
| H1H1 |
CH1 |
CT1 |
H1T1 |
24.0 |
300.1 |
| H1H1 |
CH1 |
CT1 |
H2T1 |
144.0 |
60.0 |
| H1H1 |
CH1 |
CT1 |
H3T1 |
264.0 |
180.0 |
| CZ |
CH1 |
H1H1 |
H2H1 |
241.8 |
240.0 |
| H2H1 |
CH1 |
CT1 |
H1T1 |
145.9 |
60.0 |
| H2H1 |
CH1 |
CT1 |
H2T1 |
265.9 |
180.0 |
| H2H1 |
CH1 |
CT1 |
H3T1 |
25.9 |
300.0 |
| CZ |
CH1 |
H2H1 |
H1H1 |
118.8 |
120.1 |
| H1D |
CD |
NE |
HNE |
111.9 |
120.0 |
| CG |
CD |
H1D |
H2D |
240.1 |
239.9 |
| H2D |
CD |
NE |
HNE |
232.0 |
240.0 |
| CG |
CD |
H2D |
H1D |
119.9 |
120.0 |
| H1G |
CG |
CD |
H1D |
182.9 |
180.1 |
| H1G |
CG |
CD |
H2D |
62.9 |
60.0 |
| CB |
CG |
H1G |
H2G |
240.9 |
240.1 |
| H2G |
CG |
CD |
H1D |
304.0 |
300.0 |
| H2G |
CG |
CD |
H2D |
183.9 |
180.0 |
| CB |
CG |
H2G |
H1G |
119.4 |
119.9 |
| H1B |
CB |
CG |
H1G |
176.6 |
179.9 |
| H1B |
CB |
CG |
H2G |
55.6 |
60.0 |
| CA |
CB |
H1B |
H2B |
241.5 |
239.9 |
| H2B |
CB |
CG |
H1G |
298.2 |
299.9 |
| H2B |
CB |
CG |
H2G |
177.2 |
180.0 |
| CA |
CB |
H2B |
H1B |
119.0 |
120.1 |
| HA |
CA |
C |
OA1 |
32.4 |
39.9 |
| HA |
CA |
CB |
H1B |
188.8 |
295.0 |
| HA |
CA |
CB |
H2B |
67.2 |
174.9 |
| H1N |
N |
CA |
HA |
26.3 |
180.1 |
| H2N |
N |
CA |
HA |
146.3 |
304.0 |