PDB Chemical Component LN0

Ideal Model

Chemical Description

Name methyl 6,8-dideoxy-6-{[(4R)-1-methyl-4-propyl-L-prolyl]amino}-1-thio-D-glycero-alpha-D-galacto-octopyranosid-7-ulose
Synonyms lincomycin, oxidized form
Formula C18 H32 N2 O6 S
Formal charge 0
Molecular weight 404.521 g/mol
Component type NON-POLYMER

Chemical features

Atom count 59
Chiral atom count 8
Chiral atoms C4 C5 C11 C7 C13 C3 C2 C1
Bond count 60
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) methyl 6,8-dideoxy-6-{[(4R)-1-methyl-4-propyl-L-prolyl]amino}-1-thio-D-glycero-alpha-D-galacto-octopyranosid-7-ulose
Systematic name (OpenEye OEToolkits) (2S,4R)-1-methyl-N-[(1S)-1-[(2R,3R,4S,5R,6R)-6-methylsulfanyl-3,4,5-tris(oxidanyl)oxan-2-yl]-2-oxidanylidene-propyl]-4-propyl-pyrrolidine-2-carboxamide

Chemical Descriptors

Stereo SMILES (CACTVS) CCC[C@@H]1C[C@H](N(C)C1)C(=O)N[C@@H]([C@H]2O[C@H](SC)[C@H](O)[C@@H](O)[C@H]2O)C(C)=O
SMILES (CACTVS) CCC[CH]1C[CH](N(C)C1)C(=O)N[CH]([CH]2O[CH](SC)[CH](O)[CH](O)[CH]2O)C(C)=O
Stereo SMILES (OpenEye) CCC[C@@H]1C[C@H](N(C1)C)C(=O)N[C@@H]([C@@H]2[C@@H]([C@@H]([C@H]([C@H](O2)SC)O)O)O)C(=O)C
InChI descriptor InChI=1S/C18H32N2O6S/c1-5-6-10-7-11(20(3)8-10)17(25)19-12(9(2)21)16-14(23)13(22)15(24)18(26-16)27-4/h10-16,18,22-24H,5-8H2,1-4H3,(H,19,25)/t10-,11+,12-,13+,14-,15-,16-,18-/m1/s1
InChIKey descriptor YZRHYYDECCEWRG-DWVYNAINSA-N

Status Information

Last modified 2020-06-17
Created 2012-03-29
Release status REL
Model PDB code 4E8J
Processing site RCSB