PDB Chemical Component LMZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LMZ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.390 |
1.341 |
N1 |
C6 |
1.387 |
1.361 |
N1 |
HN1 |
1.020 |
0.971 |
C2 |
N3 |
1.361 |
1.342 |
C2 |
O2 |
1.390 |
1.215 |
N3 |
C4 |
1.374 |
1.348 |
N3 |
HN3 |
1.020 |
0.971 |
C4 |
C5 |
1.514 |
1.479 |
C4 |
O4 |
1.376 |
1.216 |
C5 |
C6 |
1.427 |
1.424 |
C5 |
N5 |
1.442 |
1.319 |
C6 |
N7 |
1.372 |
1.348 |
N7 |
C8 |
1.497 |
1.463 |
N7 |
HN7 |
1.020 |
0.971 |
C8 |
C9 |
1.580 |
1.530 |
C8 |
H81 |
1.115 |
1.089 |
C8 |
H82 |
1.114 |
1.089 |
C9 |
O9 |
1.399 |
1.428 |
C9 |
C10 |
1.590 |
1.530 |
C9 |
H9 |
1.115 |
1.090 |
O9 |
HO9 |
0.950 |
0.967 |
C10 |
O10 |
1.414 |
1.429 |
C10 |
C11 |
1.653 |
1.529 |
C10 |
H10 |
1.116 |
1.089 |
O10 |
HO10 |
0.950 |
0.967 |
C11 |
O11 |
1.441 |
1.429 |
C11 |
C12 |
1.586 |
1.530 |
C11 |
H11 |
1.115 |
1.090 |
O11 |
HO11 |
0.949 |
0.966 |
C12 |
O12 |
1.413 |
1.428 |
C12 |
H121 |
1.115 |
1.089 |
C12 |
H122 |
1.114 |
1.090 |
O12 |
HO12 |
0.950 |
0.966 |
N5 |
O52 |
1.236 |
1.218 |
Bond Angles for LMZ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
125.9 |
121.5 |
C2 |
N1 |
HN1 |
106.4 |
119.3 |
N1 |
C2 |
N3 |
116.2 |
122.8 |
N1 |
C2 |
O2 |
116.9 |
118.6 |
C6 |
N1 |
HN1 |
106.5 |
119.2 |
N1 |
C6 |
C5 |
117.5 |
118.6 |
N1 |
C6 |
N7 |
116.7 |
120.6 |
N3 |
C2 |
O2 |
126.9 |
118.6 |
C2 |
N3 |
C4 |
125.4 |
121.0 |
C2 |
N3 |
HN3 |
116.7 |
119.5 |
C4 |
N3 |
HN3 |
117.9 |
119.5 |
N3 |
C4 |
C5 |
117.3 |
118.4 |
N3 |
C4 |
O4 |
114.4 |
120.8 |
C5 |
C4 |
O4 |
128.3 |
120.8 |
C4 |
C5 |
C6 |
117.6 |
117.6 |
C4 |
C5 |
N5 |
116.8 |
121.2 |
C6 |
C5 |
N5 |
125.5 |
121.2 |
C5 |
C6 |
N7 |
125.8 |
120.8 |
C5 |
N5 |
O52 |
119.6 |
120.0 |
C6 |
N7 |
C8 |
111.6 |
120.0 |
C6 |
N7 |
HN7 |
111.4 |
119.9 |
C8 |
N7 |
HN7 |
111.4 |
120.0 |
N7 |
C8 |
C9 |
113.9 |
109.5 |
N7 |
C8 |
H81 |
110.6 |
109.4 |
N7 |
C8 |
H82 |
110.6 |
109.5 |
C9 |
C8 |
H81 |
110.6 |
109.4 |
C9 |
C8 |
H82 |
110.6 |
109.5 |
C8 |
C9 |
O9 |
106.8 |
109.5 |
C8 |
C9 |
C10 |
126.3 |
109.5 |
C8 |
C9 |
H9 |
98.8 |
109.4 |
H81 |
C8 |
H82 |
99.7 |
109.5 |
O9 |
C9 |
C10 |
108.1 |
109.5 |
O9 |
C9 |
H9 |
120.6 |
109.4 |
C9 |
O9 |
HO9 |
106.9 |
106.8 |
C10 |
C9 |
H9 |
97.1 |
109.5 |
C9 |
C10 |
O10 |
111.4 |
109.5 |
C9 |
C10 |
C11 |
124.1 |
109.5 |
C9 |
C10 |
H10 |
96.7 |
109.4 |
O10 |
C10 |
C11 |
111.4 |
109.5 |
O10 |
C10 |
H10 |
114.7 |
109.5 |
C10 |
O10 |
HO10 |
111.3 |
106.8 |
C11 |
C10 |
H10 |
96.7 |
109.5 |
C10 |
C11 |
O11 |
96.4 |
109.5 |
C10 |
C11 |
C12 |
127.1 |
109.5 |
C10 |
C11 |
H11 |
104.8 |
109.5 |
O11 |
C11 |
C12 |
99.6 |
109.5 |
O11 |
C11 |
H11 |
130.5 |
109.5 |
C11 |
O11 |
HO11 |
96.4 |
106.8 |
C12 |
C11 |
H11 |
101.9 |
109.5 |
C11 |
C12 |
O12 |
104.4 |
109.5 |
C11 |
C12 |
H121 |
114.1 |
109.5 |
C11 |
C12 |
H122 |
114.1 |
109.4 |
O12 |
C12 |
H121 |
114.1 |
109.4 |
O12 |
C12 |
H122 |
114.1 |
109.4 |
C12 |
O12 |
HO12 |
104.4 |
106.9 |
H121 |
C12 |
H122 |
96.4 |
109.5 |
Torsion Angles for LMZ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
HN1 |
125.3 |
180.5 |
C2 |
N1 |
C6 |
C5 |
354.9 |
359.4 |
C2 |
N1 |
C6 |
N7 |
174.1 |
179.8 |
N3 |
C2 |
N1 |
O2 |
180.3 |
180.3 |
N1 |
C2 |
N3 |
C4 |
0.1 |
359.8 |
N1 |
C2 |
N3 |
HN3 |
180.1 |
179.7 |
C2 |
N1 |
C6 |
HN1 |
234.8 |
179.5 |
C6 |
N1 |
C2 |
N3 |
2.6 |
0.5 |
C6 |
N1 |
C2 |
O2 |
182.3 |
180.3 |
C4 |
C5 |
C6 |
N1 |
4.8 |
0.3 |
N1 |
C6 |
C5 |
N5 |
180.5 |
180.2 |
C5 |
C6 |
N1 |
N7 |
180.7 |
179.7 |
N1 |
C6 |
N7 |
C8 |
83.5 |
354.6 |
N1 |
C6 |
N7 |
HN7 |
318.3 |
174.7 |
C2 |
N1 |
HN1 |
C6 |
136.4 |
180.5 |
HN1 |
N1 |
C2 |
N3 |
237.3 |
180.0 |
HN1 |
N1 |
C2 |
O2 |
57.0 |
359.8 |
HN1 |
N1 |
C6 |
C5 |
120.1 |
179.9 |
HN1 |
N1 |
C6 |
N7 |
299.3 |
0.3 |
N3 |
C2 |
N1 |
C6 |
2.6 |
0.5 |
N3 |
C2 |
N1 |
HN1 |
237.3 |
180.0 |
N1 |
C2 |
N3 |
O2 |
179.6 |
179.7 |
C4 |
N3 |
C2 |
HN3 |
180.0 |
180.1 |
C2 |
N3 |
C4 |
C5 |
0.0 |
360.0 |
C2 |
N3 |
C4 |
O4 |
179.9 |
180.0 |
O2 |
C2 |
N1 |
C6 |
182.3 |
180.3 |
O2 |
C2 |
N1 |
HN1 |
57.0 |
359.8 |
N1 |
C2 |
O2 |
N3 |
180.4 |
180.3 |
O2 |
C2 |
N3 |
C4 |
180.5 |
180.1 |
O2 |
C2 |
N3 |
HN3 |
0.5 |
0.0 |
C4 |
N3 |
C2 |
O2 |
180.5 |
180.1 |
C2 |
N3 |
C4 |
HN3 |
180.0 |
179.9 |
C5 |
C4 |
N3 |
O4 |
180.2 |
180.0 |
N3 |
C4 |
C5 |
C6 |
357.5 |
0.0 |
N3 |
C4 |
C5 |
N5 |
181.4 |
180.1 |
HN3 |
N3 |
C2 |
O2 |
0.5 |
0.0 |
C2 |
N3 |
HN3 |
C4 |
180.0 |
180.1 |
HN3 |
N3 |
C4 |
C5 |
180.0 |
180.0 |
HN3 |
N3 |
C4 |
O4 |
359.9 |
0.1 |
N1 |
C6 |
C5 |
C4 |
4.8 |
0.3 |
C5 |
C4 |
N3 |
HN3 |
180.0 |
180.0 |
N3 |
C4 |
C5 |
O4 |
179.8 |
180.0 |
C6 |
C5 |
C4 |
N5 |
176.1 |
179.9 |
C4 |
C5 |
C6 |
N7 |
185.6 |
180.0 |
C4 |
C5 |
N5 |
O52 |
180.4 |
5.2 |
O4 |
C4 |
N3 |
HN3 |
359.9 |
0.1 |
N3 |
C4 |
O4 |
C5 |
180.2 |
180.0 |
O4 |
C4 |
C5 |
C6 |
177.7 |
180.0 |
O4 |
C4 |
C5 |
N5 |
1.6 |
0.0 |
C5 |
C6 |
N1 |
HN1 |
120.1 |
179.9 |
N1 |
C6 |
C5 |
N7 |
179.2 |
180.3 |
C6 |
C5 |
C4 |
O4 |
177.7 |
180.0 |
C4 |
C5 |
C6 |
N5 |
184.3 |
180.1 |
C6 |
C5 |
N5 |
O52 |
4.7 |
185.3 |
C5 |
C6 |
N7 |
C8 |
262.7 |
174.9 |
C5 |
C6 |
N7 |
HN7 |
137.5 |
355.0 |
N5 |
C5 |
C4 |
O4 |
1.6 |
0.0 |
C4 |
C5 |
N5 |
C6 |
175.7 |
179.9 |
N5 |
C5 |
C6 |
N7 |
1.3 |
359.9 |
N7 |
C6 |
N1 |
HN1 |
299.3 |
0.3 |
N1 |
C6 |
N7 |
C5 |
180.8 |
179.7 |
N7 |
C6 |
C5 |
N5 |
1.3 |
359.9 |
C8 |
N7 |
C6 |
HN7 |
125.3 |
179.9 |
C6 |
N7 |
C8 |
C9 |
249.4 |
180.0 |
C6 |
N7 |
C8 |
H81 |
14.6 |
60.1 |
C6 |
N7 |
C8 |
H82 |
124.1 |
300.1 |
C6 |
N7 |
C8 |
HN7 |
234.8 |
180.1 |
C9 |
C8 |
N7 |
H81 |
234.8 |
119.9 |
C9 |
C8 |
N7 |
H82 |
125.3 |
240.0 |
N7 |
C8 |
C9 |
O9 |
60.3 |
300.1 |
N7 |
C8 |
C9 |
C10 |
291.7 |
180.0 |
N7 |
C8 |
C9 |
H9 |
186.1 |
60.0 |
H81 |
C8 |
N7 |
H82 |
250.5 |
120.0 |
C6 |
N7 |
HN7 |
C8 |
125.4 |
179.9 |
HN7 |
N7 |
C8 |
C9 |
14.6 |
359.9 |
HN7 |
N7 |
C8 |
H81 |
139.9 |
240.0 |
HN7 |
N7 |
C8 |
H82 |
249.4 |
119.9 |
C9 |
C8 |
N7 |
HN7 |
14.6 |
359.9 |
N7 |
C8 |
C9 |
H81 |
125.2 |
240.0 |
N7 |
C8 |
C9 |
H82 |
234.7 |
120.1 |
H81 |
C8 |
C9 |
H82 |
109.5 |
240.0 |
O9 |
C9 |
C8 |
C10 |
128.7 |
120.0 |
O9 |
C9 |
C8 |
H9 |
234.3 |
240.0 |
C8 |
C9 |
O9 |
HO9 |
180.0 |
300.0 |
C10 |
C9 |
C8 |
H9 |
105.6 |
120.0 |
C8 |
C9 |
C10 |
O10 |
69.1 |
300.0 |
C8 |
C9 |
C10 |
C11 |
291.6 |
180.0 |
C8 |
C9 |
C10 |
H10 |
188.9 |
60.0 |
H81 |
C8 |
N7 |
HN7 |
139.9 |
240.0 |
N7 |
C8 |
H81 |
C9 |
232.9 |
120.0 |
N7 |
C8 |
H81 |
H82 |
116.5 |
240.0 |
C9 |
C8 |
H81 |
H82 |
243.6 |
120.0 |
H81 |
C8 |
C9 |
O9 |
295.1 |
60.0 |
H81 |
C8 |
C9 |
C10 |
166.4 |
300.0 |
H81 |
C8 |
C9 |
H9 |
60.8 |
180.0 |
H82 |
C8 |
N7 |
HN7 |
249.4 |
119.9 |
N7 |
C8 |
H82 |
C9 |
127.1 |
239.9 |
N7 |
C8 |
H82 |
H81 |
243.6 |
120.0 |
C9 |
C8 |
H82 |
H81 |
116.4 |
240.0 |
H82 |
C8 |
C9 |
O9 |
185.6 |
180.0 |
H82 |
C8 |
C9 |
C10 |
56.9 |
60.0 |
H82 |
C8 |
C9 |
H9 |
311.4 |
300.0 |
O9 |
C9 |
C8 |
H81 |
295.1 |
60.0 |
O9 |
C9 |
C8 |
H82 |
185.6 |
180.0 |
C8 |
C9 |
O9 |
C10 |
221.5 |
239.9 |
C8 |
C9 |
O9 |
H9 |
111.3 |
119.9 |
C10 |
C9 |
O9 |
H9 |
249.8 |
240.0 |
O9 |
C9 |
C10 |
O10 |
300.9 |
180.0 |
O9 |
C9 |
C10 |
C11 |
163.4 |
60.0 |
O9 |
C9 |
C10 |
H10 |
60.7 |
299.9 |
C10 |
C9 |
C8 |
H81 |
166.4 |
300.0 |
C10 |
C9 |
C8 |
H82 |
56.9 |
60.0 |
C8 |
C9 |
C10 |
O9 |
128.2 |
120.0 |
C8 |
C9 |
C10 |
H9 |
253.6 |
240.0 |
O9 |
C9 |
C10 |
H9 |
125.5 |
120.0 |
C10 |
C9 |
O9 |
HO9 |
318.5 |
60.0 |
O10 |
C10 |
C9 |
C11 |
137.5 |
120.0 |
O10 |
C10 |
C9 |
H10 |
240.2 |
240.0 |
C9 |
C10 |
O10 |
HO10 |
179.9 |
300.0 |
C11 |
C10 |
C9 |
H10 |
102.7 |
120.0 |
C9 |
C10 |
C11 |
O11 |
359.2 |
300.0 |
C9 |
C10 |
C11 |
C12 |
252.0 |
180.0 |
C9 |
C10 |
C11 |
H11 |
134.0 |
60.0 |
H9 |
C9 |
C8 |
H81 |
60.8 |
180.0 |
H9 |
C9 |
C8 |
H82 |
311.4 |
300.0 |
C8 |
C9 |
H9 |
O9 |
244.5 |
240.0 |
C8 |
C9 |
H9 |
C10 |
128.5 |
120.0 |
O9 |
C9 |
H9 |
C10 |
244.0 |
240.0 |
H9 |
C9 |
O9 |
HO9 |
68.7 |
180.0 |
H9 |
C9 |
C10 |
O10 |
175.5 |
60.0 |
H9 |
C9 |
C10 |
C11 |
38.0 |
300.0 |
H9 |
C9 |
C10 |
H10 |
295.3 |
180.0 |
HO9 |
O9 |
C9 |
C10 |
318.5 |
60.0 |
HO9 |
O9 |
C9 |
H9 |
68.7 |
180.0 |
O10 |
C10 |
C9 |
H9 |
175.5 |
60.0 |
C9 |
C10 |
O10 |
C11 |
217.0 |
240.0 |
C9 |
C10 |
O10 |
H10 |
108.5 |
119.9 |
C11 |
C10 |
O10 |
H10 |
251.5 |
239.9 |
O10 |
C10 |
C11 |
O11 |
221.7 |
180.0 |
O10 |
C10 |
C11 |
C12 |
114.5 |
60.0 |
O10 |
C10 |
C11 |
H11 |
356.6 |
300.0 |
C11 |
C10 |
C9 |
H9 |
38.0 |
300.0 |
C9 |
C10 |
C11 |
O10 |
137.5 |
120.0 |
C9 |
C10 |
C11 |
H10 |
257.3 |
240.0 |
O10 |
C10 |
C11 |
H10 |
119.8 |
120.0 |
C11 |
C10 |
O10 |
HO10 |
323.0 |
60.1 |
O11 |
C11 |
C10 |
C12 |
107.2 |
120.0 |
O11 |
C11 |
C10 |
H11 |
225.1 |
240.0 |
C10 |
C11 |
O11 |
HO11 |
180.0 |
300.0 |
C12 |
C11 |
C10 |
H11 |
117.9 |
120.0 |
C10 |
C11 |
C12 |
O12 |
337.9 |
180.0 |
C10 |
C11 |
C12 |
H121 |
103.1 |
60.0 |
C10 |
C11 |
C12 |
H122 |
212.6 |
299.9 |
H10 |
C10 |
C9 |
H9 |
295.3 |
180.0 |
C9 |
C10 |
H10 |
O10 |
242.8 |
240.0 |
C9 |
C10 |
H10 |
C11 |
125.6 |
120.0 |
O10 |
C10 |
H10 |
C11 |
242.8 |
240.0 |
H10 |
C10 |
O10 |
HO10 |
71.4 |
180.1 |
H10 |
C10 |
C11 |
O11 |
101.9 |
60.0 |
H10 |
C10 |
C11 |
C12 |
354.7 |
300.0 |
H10 |
C10 |
C11 |
H11 |
236.8 |
180.0 |
HO10 |
O10 |
C10 |
C11 |
323.0 |
60.1 |
HO10 |
O10 |
C10 |
H10 |
71.4 |
180.1 |
O11 |
C11 |
C10 |
H10 |
101.9 |
60.0 |
C10 |
C11 |
O11 |
C12 |
230.6 |
240.0 |
C10 |
C11 |
O11 |
H11 |
115.7 |
120.0 |
C12 |
C11 |
O11 |
H11 |
245.2 |
240.0 |
O11 |
C11 |
C12 |
O12 |
232.2 |
60.0 |
O11 |
C11 |
C12 |
H121 |
357.5 |
300.0 |
O11 |
C11 |
C12 |
H122 |
107.0 |
180.0 |
C12 |
C11 |
C10 |
H10 |
354.7 |
300.0 |
C10 |
C11 |
C12 |
O11 |
105.6 |
120.0 |
C10 |
C11 |
C12 |
H11 |
240.8 |
240.0 |
O11 |
C11 |
C12 |
H11 |
135.2 |
120.0 |
C12 |
C11 |
O11 |
HO11 |
309.4 |
60.0 |
O12 |
C12 |
C11 |
H121 |
234.8 |
120.0 |
O12 |
C12 |
C11 |
H122 |
125.2 |
240.0 |
C11 |
C12 |
O12 |
HO12 |
180.0 |
180.0 |
H121 |
C12 |
C11 |
H122 |
250.5 |
120.0 |
H11 |
C11 |
C10 |
H10 |
236.8 |
180.0 |
C10 |
C11 |
H11 |
O11 |
247.8 |
240.0 |
C10 |
C11 |
H11 |
C12 |
134.0 |
120.0 |
O11 |
C11 |
H11 |
C12 |
246.1 |
240.0 |
H11 |
C11 |
O11 |
HO11 |
64.3 |
180.0 |
H11 |
C11 |
C12 |
O12 |
97.1 |
300.0 |
H11 |
C11 |
C12 |
H121 |
222.3 |
180.0 |
H11 |
C11 |
C12 |
H122 |
331.8 |
60.0 |
HO11 |
O11 |
C11 |
C12 |
309.4 |
60.0 |
HO11 |
O11 |
C11 |
H11 |
64.3 |
180.0 |
O12 |
C12 |
C11 |
H11 |
97.1 |
300.0 |
C11 |
C12 |
O12 |
H121 |
125.2 |
240.0 |
C11 |
C12 |
O12 |
H122 |
234.7 |
120.0 |
H121 |
C12 |
O12 |
H122 |
109.5 |
240.0 |
H121 |
C12 |
C11 |
H11 |
222.3 |
180.0 |
C11 |
C12 |
H121 |
O12 |
240.1 |
120.0 |
C11 |
C12 |
H121 |
H122 |
120.1 |
240.0 |
O12 |
C12 |
H121 |
H122 |
240.0 |
120.0 |
H121 |
C12 |
O12 |
HO12 |
54.7 |
300.0 |
H122 |
C12 |
C11 |
H11 |
331.8 |
60.0 |
C11 |
C12 |
H122 |
O12 |
119.9 |
240.0 |
C11 |
C12 |
H122 |
H121 |
239.9 |
120.0 |
O12 |
C12 |
H122 |
H121 |
120.0 |
240.0 |
H122 |
C12 |
O12 |
HO12 |
305.2 |
60.0 |
HO12 |
O12 |
C12 |
H121 |
54.7 |
300.0 |
HO12 |
O12 |
C12 |
H122 |
305.2 |
60.0 |