PDB Chemical Component LMZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LMZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.390 1.341
N1 C6 1.387 1.361
N1 HN1 1.020 0.971
C2 N3 1.361 1.342
C2 O2 1.390 1.215
N3 C4 1.374 1.348
N3 HN3 1.020 0.971
C4 C5 1.514 1.479
C4 O4 1.376 1.216
C5 C6 1.427 1.424
C5 N5 1.442 1.319
C6 N7 1.372 1.348
N7 C8 1.497 1.463
N7 HN7 1.020 0.971
C8 C9 1.580 1.530
C8 H81 1.115 1.089
C8 H82 1.114 1.089
C9 O9 1.399 1.428
C9 C10 1.590 1.530
C9 H9 1.115 1.090
O9 HO9 0.950 0.967
C10 O10 1.414 1.429
C10 C11 1.653 1.529
C10 H10 1.116 1.089
O10 HO10 0.950 0.967
C11 O11 1.441 1.429
C11 C12 1.586 1.530
C11 H11 1.115 1.090
O11 HO11 0.949 0.966
C12 O12 1.413 1.428
C12 H121 1.115 1.089
C12 H122 1.114 1.090
O12 HO12 0.950 0.966
N5 O52 1.236 1.218

Bond Angles for LMZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 125.9 121.5
C2 N1 HN1 106.4 119.3
N1 C2 N3 116.2 122.8
N1 C2 O2 116.9 118.6
C6 N1 HN1 106.5 119.2
N1 C6 C5 117.5 118.6
N1 C6 N7 116.7 120.6
N3 C2 O2 126.9 118.6
C2 N3 C4 125.4 121.0
C2 N3 HN3 116.7 119.5
C4 N3 HN3 117.9 119.5
N3 C4 C5 117.3 118.4
N3 C4 O4 114.4 120.8
C5 C4 O4 128.3 120.8
C4 C5 C6 117.6 117.6
C4 C5 N5 116.8 121.2
C6 C5 N5 125.5 121.2
C5 C6 N7 125.8 120.8
C5 N5 O52 119.6 120.0
C6 N7 C8 111.6 120.0
C6 N7 HN7 111.4 119.9
C8 N7 HN7 111.4 120.0
N7 C8 C9 113.9 109.5
N7 C8 H81 110.6 109.4
N7 C8 H82 110.6 109.5
C9 C8 H81 110.6 109.4
C9 C8 H82 110.6 109.5
C8 C9 O9 106.8 109.5
C8 C9 C10 126.3 109.5
C8 C9 H9 98.8 109.4
H81 C8 H82 99.7 109.5
O9 C9 C10 108.1 109.5
O9 C9 H9 120.6 109.4
C9 O9 HO9 106.9 106.8
C10 C9 H9 97.1 109.5
C9 C10 O10 111.4 109.5
C9 C10 C11 124.1 109.5
C9 C10 H10 96.7 109.4
O10 C10 C11 111.4 109.5
O10 C10 H10 114.7 109.5
C10 O10 HO10 111.3 106.8
C11 C10 H10 96.7 109.5
C10 C11 O11 96.4 109.5
C10 C11 C12 127.1 109.5
C10 C11 H11 104.8 109.5
O11 C11 C12 99.6 109.5
O11 C11 H11 130.5 109.5
C11 O11 HO11 96.4 106.8
C12 C11 H11 101.9 109.5
C11 C12 O12 104.4 109.5
C11 C12 H121 114.1 109.5
C11 C12 H122 114.1 109.4
O12 C12 H121 114.1 109.4
O12 C12 H122 114.1 109.4
C12 O12 HO12 104.4 106.9
H121 C12 H122 96.4 109.5

Torsion Angles for LMZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 HN1 125.3 180.5
C2 N1 C6 C5 354.9 359.4
C2 N1 C6 N7 174.1 179.8
N3 C2 N1 O2 180.3 180.3
N1 C2 N3 C4 0.1 359.8
N1 C2 N3 HN3 180.1 179.7
C2 N1 C6 HN1 234.8 179.5
C6 N1 C2 N3 2.6 0.5
C6 N1 C2 O2 182.3 180.3
C4 C5 C6 N1 4.8 0.3
N1 C6 C5 N5 180.5 180.2
C5 C6 N1 N7 180.7 179.7
N1 C6 N7 C8 83.5 354.6
N1 C6 N7 HN7 318.3 174.7
C2 N1 HN1 C6 136.4 180.5
HN1 N1 C2 N3 237.3 180.0
HN1 N1 C2 O2 57.0 359.8
HN1 N1 C6 C5 120.1 179.9
HN1 N1 C6 N7 299.3 0.3
N3 C2 N1 C6 2.6 0.5
N3 C2 N1 HN1 237.3 180.0
N1 C2 N3 O2 179.6 179.7
C4 N3 C2 HN3 180.0 180.1
C2 N3 C4 C5 0.0 360.0
C2 N3 C4 O4 179.9 180.0
O2 C2 N1 C6 182.3 180.3
O2 C2 N1 HN1 57.0 359.8
N1 C2 O2 N3 180.4 180.3
O2 C2 N3 C4 180.5 180.1
O2 C2 N3 HN3 0.5 0.0
C4 N3 C2 O2 180.5 180.1
C2 N3 C4 HN3 180.0 179.9
C5 C4 N3 O4 180.2 180.0
N3 C4 C5 C6 357.5 0.0
N3 C4 C5 N5 181.4 180.1
HN3 N3 C2 O2 0.5 0.0
C2 N3 HN3 C4 180.0 180.1
HN3 N3 C4 C5 180.0 180.0
HN3 N3 C4 O4 359.9 0.1
N1 C6 C5 C4 4.8 0.3
C5 C4 N3 HN3 180.0 180.0
N3 C4 C5 O4 179.8 180.0
C6 C5 C4 N5 176.1 179.9
C4 C5 C6 N7 185.6 180.0
C4 C5 N5 O52 180.4 5.2
O4 C4 N3 HN3 359.9 0.1
N3 C4 O4 C5 180.2 180.0
O4 C4 C5 C6 177.7 180.0
O4 C4 C5 N5 1.6 0.0
C5 C6 N1 HN1 120.1 179.9
N1 C6 C5 N7 179.2 180.3
C6 C5 C4 O4 177.7 180.0
C4 C5 C6 N5 184.3 180.1
C6 C5 N5 O52 4.7 185.3
C5 C6 N7 C8 262.7 174.9
C5 C6 N7 HN7 137.5 355.0
N5 C5 C4 O4 1.6 0.0
C4 C5 N5 C6 175.7 179.9
N5 C5 C6 N7 1.3 359.9
N7 C6 N1 HN1 299.3 0.3
N1 C6 N7 C5 180.8 179.7
N7 C6 C5 N5 1.3 359.9
C8 N7 C6 HN7 125.3 179.9
C6 N7 C8 C9 249.4 180.0
C6 N7 C8 H81 14.6 60.1
C6 N7 C8 H82 124.1 300.1
C6 N7 C8 HN7 234.8 180.1
C9 C8 N7 H81 234.8 119.9
C9 C8 N7 H82 125.3 240.0
N7 C8 C9 O9 60.3 300.1
N7 C8 C9 C10 291.7 180.0
N7 C8 C9 H9 186.1 60.0
H81 C8 N7 H82 250.5 120.0
C6 N7 HN7 C8 125.4 179.9
HN7 N7 C8 C9 14.6 359.9
HN7 N7 C8 H81 139.9 240.0
HN7 N7 C8 H82 249.4 119.9
C9 C8 N7 HN7 14.6 359.9
N7 C8 C9 H81 125.2 240.0
N7 C8 C9 H82 234.7 120.1
H81 C8 C9 H82 109.5 240.0
O9 C9 C8 C10 128.7 120.0
O9 C9 C8 H9 234.3 240.0
C8 C9 O9 HO9 180.0 300.0
C10 C9 C8 H9 105.6 120.0
C8 C9 C10 O10 69.1 300.0
C8 C9 C10 C11 291.6 180.0
C8 C9 C10 H10 188.9 60.0
H81 C8 N7 HN7 139.9 240.0
N7 C8 H81 C9 232.9 120.0
N7 C8 H81 H82 116.5 240.0
C9 C8 H81 H82 243.6 120.0
H81 C8 C9 O9 295.1 60.0
H81 C8 C9 C10 166.4 300.0
H81 C8 C9 H9 60.8 180.0
H82 C8 N7 HN7 249.4 119.9
N7 C8 H82 C9 127.1 239.9
N7 C8 H82 H81 243.6 120.0
C9 C8 H82 H81 116.4 240.0
H82 C8 C9 O9 185.6 180.0
H82 C8 C9 C10 56.9 60.0
H82 C8 C9 H9 311.4 300.0
O9 C9 C8 H81 295.1 60.0
O9 C9 C8 H82 185.6 180.0
C8 C9 O9 C10 221.5 239.9
C8 C9 O9 H9 111.3 119.9
C10 C9 O9 H9 249.8 240.0
O9 C9 C10 O10 300.9 180.0
O9 C9 C10 C11 163.4 60.0
O9 C9 C10 H10 60.7 299.9
C10 C9 C8 H81 166.4 300.0
C10 C9 C8 H82 56.9 60.0
C8 C9 C10 O9 128.2 120.0
C8 C9 C10 H9 253.6 240.0
O9 C9 C10 H9 125.5 120.0
C10 C9 O9 HO9 318.5 60.0
O10 C10 C9 C11 137.5 120.0
O10 C10 C9 H10 240.2 240.0
C9 C10 O10 HO10 179.9 300.0
C11 C10 C9 H10 102.7 120.0
C9 C10 C11 O11 359.2 300.0
C9 C10 C11 C12 252.0 180.0
C9 C10 C11 H11 134.0 60.0
H9 C9 C8 H81 60.8 180.0
H9 C9 C8 H82 311.4 300.0
C8 C9 H9 O9 244.5 240.0
C8 C9 H9 C10 128.5 120.0
O9 C9 H9 C10 244.0 240.0
H9 C9 O9 HO9 68.7 180.0
H9 C9 C10 O10 175.5 60.0
H9 C9 C10 C11 38.0 300.0
H9 C9 C10 H10 295.3 180.0
HO9 O9 C9 C10 318.5 60.0
HO9 O9 C9 H9 68.7 180.0
O10 C10 C9 H9 175.5 60.0
C9 C10 O10 C11 217.0 240.0
C9 C10 O10 H10 108.5 119.9
C11 C10 O10 H10 251.5 239.9
O10 C10 C11 O11 221.7 180.0
O10 C10 C11 C12 114.5 60.0
O10 C10 C11 H11 356.6 300.0
C11 C10 C9 H9 38.0 300.0
C9 C10 C11 O10 137.5 120.0
C9 C10 C11 H10 257.3 240.0
O10 C10 C11 H10 119.8 120.0
C11 C10 O10 HO10 323.0 60.1
O11 C11 C10 C12 107.2 120.0
O11 C11 C10 H11 225.1 240.0
C10 C11 O11 HO11 180.0 300.0
C12 C11 C10 H11 117.9 120.0
C10 C11 C12 O12 337.9 180.0
C10 C11 C12 H121 103.1 60.0
C10 C11 C12 H122 212.6 299.9
H10 C10 C9 H9 295.3 180.0
C9 C10 H10 O10 242.8 240.0
C9 C10 H10 C11 125.6 120.0
O10 C10 H10 C11 242.8 240.0
H10 C10 O10 HO10 71.4 180.1
H10 C10 C11 O11 101.9 60.0
H10 C10 C11 C12 354.7 300.0
H10 C10 C11 H11 236.8 180.0
HO10 O10 C10 C11 323.0 60.1
HO10 O10 C10 H10 71.4 180.1
O11 C11 C10 H10 101.9 60.0
C10 C11 O11 C12 230.6 240.0
C10 C11 O11 H11 115.7 120.0
C12 C11 O11 H11 245.2 240.0
O11 C11 C12 O12 232.2 60.0
O11 C11 C12 H121 357.5 300.0
O11 C11 C12 H122 107.0 180.0
C12 C11 C10 H10 354.7 300.0
C10 C11 C12 O11 105.6 120.0
C10 C11 C12 H11 240.8 240.0
O11 C11 C12 H11 135.2 120.0
C12 C11 O11 HO11 309.4 60.0
O12 C12 C11 H121 234.8 120.0
O12 C12 C11 H122 125.2 240.0
C11 C12 O12 HO12 180.0 180.0
H121 C12 C11 H122 250.5 120.0
H11 C11 C10 H10 236.8 180.0
C10 C11 H11 O11 247.8 240.0
C10 C11 H11 C12 134.0 120.0
O11 C11 H11 C12 246.1 240.0
H11 C11 O11 HO11 64.3 180.0
H11 C11 C12 O12 97.1 300.0
H11 C11 C12 H121 222.3 180.0
H11 C11 C12 H122 331.8 60.0
HO11 O11 C11 C12 309.4 60.0
HO11 O11 C11 H11 64.3 180.0
O12 C12 C11 H11 97.1 300.0
C11 C12 O12 H121 125.2 240.0
C11 C12 O12 H122 234.7 120.0
H121 C12 O12 H122 109.5 240.0
H121 C12 C11 H11 222.3 180.0
C11 C12 H121 O12 240.1 120.0
C11 C12 H121 H122 120.1 240.0
O12 C12 H121 H122 240.0 120.0
H121 C12 O12 HO12 54.7 300.0
H122 C12 C11 H11 331.8 60.0
C11 C12 H122 O12 119.9 240.0
C11 C12 H122 H121 239.9 120.0
O12 C12 H122 H121 120.0 240.0
H122 C12 O12 HO12 305.2 60.0
HO12 O12 C12 H121 54.7 300.0
HO12 O12 C12 H122 305.2 60.0