PDB Chemical Component LME
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LME
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.467 |
1.469 |
| N |
H2 |
1.000 |
1.009 |
| N |
H |
1.000 |
1.009 |
| CA |
CB |
1.567 |
1.530 |
| CA |
C |
1.523 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
C1 |
1.548 |
1.530 |
| CB |
CG |
1.560 |
1.530 |
| CB |
HB |
1.100 |
1.090 |
| C1 |
H11 |
1.100 |
1.090 |
| C1 |
H12 |
1.100 |
1.090 |
| C1 |
H13 |
1.100 |
1.090 |
| CG |
CD |
1.510 |
1.508 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.090 |
| CD |
OE1 |
1.361 |
1.208 |
| CD |
OE2 |
1.262 |
1.342 |
| OE2 |
HE2 |
0.950 |
0.967 |
| C |
O |
1.263 |
1.209 |
| C |
OXT |
1.430 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for LME
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H2 |
109.5 |
111.0 |
| CA |
N |
H |
109.5 |
111.0 |
| N |
CA |
CB |
112.4 |
109.4 |
| N |
CA |
C |
116.1 |
109.5 |
| N |
CA |
HA |
104.0 |
109.5 |
| H2 |
N |
H |
109.4 |
111.0 |
| CB |
CA |
C |
113.7 |
109.5 |
| CB |
CA |
HA |
107.0 |
109.5 |
| CA |
CB |
C1 |
112.6 |
109.5 |
| CA |
CB |
CG |
112.1 |
109.5 |
| CA |
CB |
HB |
105.6 |
109.5 |
| C |
CA |
HA |
102.3 |
109.5 |
| CA |
C |
O |
117.3 |
120.0 |
| CA |
C |
OXT |
130.0 |
120.0 |
| C1 |
CB |
CG |
110.2 |
109.5 |
| C1 |
CB |
HB |
107.7 |
109.5 |
| CB |
C1 |
H11 |
109.5 |
109.5 |
| CB |
C1 |
H12 |
109.4 |
109.4 |
| CB |
C1 |
H13 |
109.5 |
109.4 |
| CG |
CB |
HB |
108.3 |
109.5 |
| CB |
CG |
CD |
112.4 |
109.4 |
| CB |
CG |
HG2 |
108.5 |
109.5 |
| CB |
CG |
HG3 |
108.5 |
109.5 |
| H11 |
C1 |
H12 |
109.5 |
109.5 |
| H11 |
C1 |
H13 |
109.5 |
109.5 |
| H12 |
C1 |
H13 |
109.5 |
109.4 |
| CD |
CG |
HG2 |
108.5 |
109.5 |
| CD |
CG |
HG3 |
108.5 |
109.4 |
| CG |
CD |
OE1 |
120.0 |
120.0 |
| CG |
CD |
OE2 |
119.8 |
120.0 |
| HG2 |
CG |
HG3 |
110.5 |
109.5 |
| OE1 |
CD |
OE2 |
120.2 |
120.0 |
| CD |
OE2 |
HE2 |
109.5 |
117.0 |
| O |
C |
OXT |
112.6 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for LME
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H2 |
N |
CA |
H |
240.0 |
236.0 |
| CB |
CA |
N |
C |
226.8 |
240.0 |
| CB |
CA |
N |
HA |
115.3 |
120.0 |
| N |
CA |
CB |
C1 |
69.8 |
60.0 |
| N |
CA |
CB |
CG |
304.9 |
300.0 |
| N |
CA |
CB |
HB |
187.1 |
180.0 |
| C |
CA |
N |
HA |
248.5 |
240.0 |
| N |
CA |
C |
O |
191.2 |
340.0 |
| N |
CA |
C |
OXT |
11.2 |
160.0 |
| CA |
N |
H2 |
H |
120.0 |
124.0 |
| H2 |
N |
CA |
CB |
180.0 |
300.0 |
| H2 |
N |
CA |
C |
313.2 |
60.0 |
| H2 |
N |
CA |
HA |
64.7 |
180.0 |
| CA |
N |
H |
H2 |
240.0 |
236.0 |
| H |
N |
CA |
CB |
300.0 |
64.0 |
| H |
N |
CA |
C |
73.2 |
184.0 |
| H |
N |
CA |
HA |
184.7 |
304.0 |
| CB |
CA |
N |
H2 |
180.0 |
300.0 |
| CB |
CA |
N |
H |
300.0 |
64.0 |
| N |
CA |
CB |
C |
134.3 |
120.0 |
| N |
CA |
CB |
HA |
246.5 |
240.0 |
| C |
CA |
CB |
HA |
112.2 |
120.0 |
| CB |
CA |
C |
O |
323.8 |
100.0 |
| CB |
CA |
C |
OXT |
143.7 |
280.0 |
| C1 |
CB |
CA |
CG |
124.9 |
120.0 |
| C1 |
CB |
CA |
HB |
242.7 |
239.9 |
| CA |
CB |
C1 |
H11 |
180.0 |
300.0 |
| CA |
CB |
C1 |
H12 |
300.0 |
60.1 |
| CA |
CB |
C1 |
H13 |
60.0 |
180.0 |
| CG |
CB |
CA |
HB |
117.8 |
120.0 |
| CA |
CB |
CG |
CD |
303.4 |
185.0 |
| CA |
CB |
CG |
HG2 |
63.4 |
305.0 |
| CA |
CB |
CG |
HG3 |
183.4 |
65.0 |
| C |
CA |
N |
H2 |
313.2 |
60.0 |
| C |
CA |
N |
H |
73.2 |
184.0 |
| N |
CA |
C |
CB |
227.4 |
240.0 |
| N |
CA |
C |
HA |
112.4 |
120.0 |
| CB |
CA |
C |
HA |
245.0 |
240.0 |
| C |
CA |
CB |
C1 |
295.5 |
300.0 |
| C |
CA |
CB |
CG |
170.6 |
180.0 |
| C |
CA |
CB |
HB |
52.8 |
60.0 |
| O |
C |
CA |
OXT |
180.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H2 |
64.7 |
180.0 |
| HA |
CA |
N |
H |
184.7 |
304.0 |
| N |
CA |
HA |
CB |
119.1 |
120.0 |
| N |
CA |
HA |
C |
238.8 |
240.0 |
| CB |
CA |
HA |
C |
119.8 |
120.0 |
| HA |
CA |
CB |
C1 |
183.3 |
179.9 |
| HA |
CA |
CB |
CG |
58.4 |
60.0 |
| HA |
CA |
CB |
HB |
300.6 |
300.0 |
| HA |
CA |
C |
O |
78.7 |
220.0 |
| HA |
CA |
C |
OXT |
258.7 |
40.0 |
| C1 |
CB |
CA |
C |
295.5 |
300.0 |
| C1 |
CB |
CA |
HA |
183.3 |
179.9 |
| CA |
CB |
C1 |
CG |
234.1 |
240.0 |
| CA |
CB |
C1 |
HB |
116.1 |
120.0 |
| CG |
CB |
C1 |
HB |
242.0 |
240.0 |
| C1 |
CB |
CG |
CD |
177.2 |
65.0 |
| C1 |
CB |
CG |
HG2 |
297.2 |
185.0 |
| C1 |
CB |
CG |
HG3 |
57.2 |
305.1 |
| H11 |
C1 |
CB |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
CB |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
CB |
H13 |
240.0 |
240.1 |
| CG |
CB |
CA |
C |
170.6 |
180.0 |
| CG |
CB |
CA |
HA |
58.4 |
60.0 |
| CA |
CB |
CG |
C1 |
126.2 |
120.0 |
| CA |
CB |
CG |
HB |
243.9 |
240.0 |
| C1 |
CB |
CG |
HB |
117.6 |
120.1 |
| CG |
CB |
C1 |
H11 |
305.9 |
60.0 |
| CG |
CB |
C1 |
H12 |
65.9 |
180.0 |
| CG |
CB |
C1 |
H13 |
185.9 |
300.0 |
| CD |
CG |
CB |
HG2 |
240.0 |
240.0 |
| CD |
CG |
CB |
HG3 |
120.0 |
120.0 |
| CB |
CG |
CD |
OE1 |
297.2 |
0.0 |
| CB |
CG |
CD |
OE2 |
116.2 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
240.0 |
240.0 |
| HB |
CB |
CA |
C |
52.8 |
60.0 |
| HB |
CB |
CA |
HA |
300.6 |
300.0 |
| CA |
CB |
HB |
C1 |
239.4 |
240.0 |
| CA |
CB |
HB |
CG |
120.2 |
120.0 |
| C1 |
CB |
HB |
CG |
240.8 |
240.0 |
| HB |
CB |
C1 |
H11 |
63.9 |
180.0 |
| HB |
CB |
C1 |
H12 |
183.9 |
300.0 |
| HB |
CB |
C1 |
H13 |
303.9 |
60.0 |
| HB |
CB |
CG |
CD |
59.6 |
305.0 |
| HB |
CB |
CG |
HG2 |
179.5 |
65.0 |
| HB |
CB |
CG |
HG3 |
299.6 |
185.0 |
| H11 |
C1 |
CB |
CG |
305.9 |
60.0 |
| H11 |
C1 |
CB |
HB |
63.9 |
180.0 |
| CB |
C1 |
H11 |
H12 |
120.0 |
120.0 |
| CB |
C1 |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
C1 |
H11 |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
CB |
CG |
65.9 |
180.0 |
| H12 |
C1 |
CB |
HB |
183.9 |
300.0 |
| CB |
C1 |
H12 |
H11 |
240.0 |
239.9 |
| CB |
C1 |
H12 |
H13 |
120.0 |
119.9 |
| H11 |
C1 |
H12 |
H13 |
240.0 |
240.0 |
| H13 |
C1 |
CB |
CG |
185.9 |
300.0 |
| H13 |
C1 |
CB |
HB |
303.9 |
60.0 |
| CB |
C1 |
H13 |
H11 |
120.0 |
120.1 |
| CB |
C1 |
H13 |
H12 |
240.0 |
240.1 |
| H11 |
C1 |
H13 |
H12 |
120.0 |
120.0 |
| CD |
CG |
CB |
HB |
59.6 |
305.0 |
| CB |
CG |
CD |
HG2 |
120.0 |
120.0 |
| CB |
CG |
CD |
HG3 |
240.0 |
240.0 |
| HG2 |
CG |
CD |
HG3 |
120.0 |
120.0 |
| OE1 |
CD |
CG |
OE2 |
181.0 |
180.0 |
| CG |
CD |
OE2 |
HE2 |
181.0 |
180.0 |
| HG2 |
CG |
CB |
HB |
179.5 |
65.0 |
| CB |
CG |
HG2 |
CD |
237.6 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
118.8 |
120.1 |
| CD |
CG |
HG2 |
HG3 |
241.2 |
240.0 |
| HG2 |
CG |
CD |
OE1 |
177.2 |
240.0 |
| HG2 |
CG |
CD |
OE2 |
356.3 |
60.0 |
| HG3 |
CG |
CB |
HB |
299.6 |
185.0 |
| CB |
CG |
HG3 |
CD |
122.4 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
241.2 |
239.9 |
| CD |
CG |
HG3 |
HG2 |
118.8 |
120.0 |
| HG3 |
CG |
CD |
OE1 |
57.2 |
120.0 |
| HG3 |
CG |
CD |
OE2 |
236.2 |
300.0 |
| OE1 |
CD |
CG |
HG2 |
177.2 |
240.0 |
| OE1 |
CD |
CG |
HG3 |
57.2 |
120.0 |
| CG |
CD |
OE1 |
OE2 |
179.0 |
180.0 |
| OE1 |
CD |
OE2 |
HE2 |
360.0 |
0.0 |
| OE2 |
CD |
CG |
HG2 |
356.3 |
60.0 |
| OE2 |
CD |
CG |
HG3 |
236.2 |
300.0 |
| CG |
CD |
OE2 |
OE1 |
181.0 |
180.0 |
| O |
C |
CA |
HA |
78.7 |
220.0 |
| CA |
C |
O |
OXT |
180.0 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| OXT |
C |
CA |
HA |
258.7 |
40.0 |
| CA |
C |
OXT |
O |
180.0 |
180.0 |