PDB Chemical Component LMB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LMB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C30 C16 1.525 1.531
C27 C26 1.515 1.530
C26 C8 1.520 1.507
C11 C12 1.514 1.508
C11 C10 1.518 1.530
C13 C12 1.327 1.329
C13 C14 1.475 1.471
C15 C16 1.510 1.507
C15 C14 1.346 1.329
O2 C5 1.437 1.429
C8 C9 1.352 1.329
C8 C7 1.489 1.471
C9 C10 1.513 1.507
C16 C17 1.495 1.507
C14 C29 1.505 1.507
C7 C6 1.335 1.329
C6 C5 1.510 1.507
C10 C28 1.525 1.530
C5 C4 1.532 1.530
O3 C17 1.222 1.208
C17 C18 1.504 1.507
C25 C4 1.521 1.530
C2 C3 1.536 1.529
C2 C1 1.507 1.507
O1 C1 1.252 1.208
C4 C3 1.540 1.530
C1 O1' 1.250 1.342
C31 C18 1.531 1.530
C18 C19 1.535 1.530
C33 C22 1.504 1.507
C19 C20 1.533 1.529
C19 O4 1.434 1.429
C20 C32 1.525 1.531
C20 C21 1.530 1.530
O6 C24 1.247 1.215
C22 C21 1.513 1.507
C22 C23 1.347 1.331
C24 C23 1.482 1.469
C24 O5 1.246 1.348
O5 H1 0.950 0.967
C23 H2 1.080 1.081
C33 H3 1.100 1.090
C33 H4 1.100 1.090
C33 H5 1.099 1.090
C21 H6 1.100 1.090
C21 H7 1.100 1.089
C20 H8 1.100 1.090
C32 H9 1.100 1.089
C32 H10 1.100 1.090
C32 H11 1.100 1.091
C19 H12 1.100 1.090
O4 H13 0.950 0.967
C18 H14 1.100 1.089
C31 H15 1.100 1.091
C31 H16 1.100 1.090
C31 H17 1.100 1.090
C16 H18 1.100 1.090
C30 H19 1.100 1.089
C30 H20 1.100 1.089
C30 H21 1.100 1.090
C15 H22 1.080 1.080
C29 H23 1.100 1.090
C29 H24 1.101 1.090
C29 H25 1.100 1.090
C13 H26 1.080 1.080
C12 H27 1.080 1.080
C11 H28 1.100 1.090
C11 H29 1.100 1.090
C10 H30 1.100 1.090
C28 H31 1.100 1.090
C28 H32 1.100 1.090
C28 H33 1.100 1.090
C9 H34 1.079 1.080
C26 H35 1.100 1.091
C26 H36 1.100 1.090
C27 H37 1.100 1.090
C27 H38 1.101 1.091
C27 H39 1.100 1.091
C7 H40 1.080 1.080
C6 H41 1.080 1.080
C5 H42 1.100 1.091
O2 H43 0.951 0.968
C4 H44 1.100 1.091
C25 H45 1.100 1.090
C25 H46 1.100 1.090
C25 H47 1.100 1.090
C3 H48 1.100 1.090
C3 H49 1.100 1.090
C2 H50 1.099 1.090
C2 H51 1.100 1.091
O1' H52 0.950 0.967

Bond Angles for LMB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C30 C16 H18 109.5 109.4
C27 C26 H35 108.4 109.4
C27 C26 H36 108.5 109.5
C26 C8 C7 118.4 120.0
C11 C12 H27 120.7 120.0
C11 C10 C28 110.5 109.5
C10 C11 H28 109.3 109.4
C10 C11 H29 109.3 109.5
C11 C10 H30 109.6 109.4
C12 C13 H26 118.6 120.0
C13 C12 H27 120.8 120.0
C15 C16 H18 109.6 109.5
C15 C14 C29 122.6 120.0
C14 C15 H22 118.3 120.0
O2 C5 C4 108.7 109.5
O2 C5 H42 109.5 109.4
C8 C9 H34 117.3 120.0
C8 C7 C6 122.2 120.0
C8 C7 H40 118.9 120.0
C9 C10 H30 109.6 109.5
C14 C29 H23 109.5 109.4
C14 C29 H24 109.4 109.5
C14 C29 H25 109.5 109.5
C7 C6 C5 119.5 120.0
C6 C7 H40 118.9 120.0
C7 C6 H41 120.2 120.0
C6 C5 C4 117.1 109.5
C5 C6 H41 120.2 120.0
C6 C5 H42 108.5 109.4
C28 C10 H30 109.4 109.5
C10 C28 H31 109.5 109.5
C10 C28 H32 109.5 109.5
C10 C28 H33 109.5 109.5
C5 C4 C3 111.4 109.5
C4 C5 H42 108.3 109.5
C5 C4 H44 108.0 109.4
C17 C18 H14 109.0 109.5
C25 C4 C3 109.9 109.5
C25 C4 H44 108.2 109.5
C2 C3 H48 109.0 109.5
C2 C3 H49 109.0 109.5
C2 C1 O1' 116.8 120.0
C1 C2 H50 108.3 109.5
C1 C2 H51 108.3 109.5
C3 C4 H44 108.0 109.4
C4 C3 H48 109.0 109.4
C4 C3 H49 109.0 109.4
C1 O1' H52 109.5 117.0
C31 C18 H14 108.6 109.5
C18 C19 H12 107.9 109.5
C33 C22 C21 118.9 120.1
C19 C20 H8 107.9 109.5
O4 C19 H12 109.3 109.5
C19 O4 H13 109.5 114.0
C32 C20 H8 108.0 109.4
C20 C32 H9 109.5 109.5
C20 C32 H10 109.5 109.5
C20 C32 H11 109.5 109.4
C20 C21 H6 109.1 109.4
C20 C21 H7 109.1 109.5
O6 C24 C23 121.3 120.0
O6 C24 O5 120.2 120.0
C22 C21 H6 109.1 109.4
C22 C21 H7 109.1 109.5
C22 C23 H2 118.7 120.0
O5 C24 C23 118.6 120.0
C24 C23 H2 118.7 120.0
C24 O5 H1 109.5 117.0
H3 C33 H4 109.5 109.5
H3 C33 H5 109.5 109.5
H4 C33 H5 109.5 109.5
H6 C21 H7 109.5 109.5
H9 C32 H10 109.5 109.5
H9 C32 H11 109.4 109.4
H10 C32 H11 109.4 109.4
H15 C31 H16 109.5 109.4
H15 C31 H17 109.4 109.5
H16 C31 H17 109.5 109.4
H19 C30 H20 109.5 109.5
H19 C30 H21 109.5 109.5
H20 C30 H21 109.5 109.5
H23 C29 H24 109.5 109.4
H23 C29 H25 109.4 109.5
H24 C29 H25 109.5 109.5
H28 C11 H29 109.4 109.5
H31 C28 H32 109.5 109.5
H31 C28 H33 109.4 109.4
H32 C28 H33 109.5 109.5
H35 C26 H36 109.5 109.5
H37 C27 H38 109.5 109.5
H37 C27 H39 109.5 109.5
H38 C27 H39 109.4 109.5
H45 C25 H46 109.5 109.5
H45 C25 H47 109.4 109.4
H46 C25 H47 109.5 109.5
H48 C3 H49 109.5 109.5
H50 C2 H51 109.5 109.4

Torsion Angles for LMB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C15 C16 C30 H18 241.0 240.0
C27 C26 C8 C7 184.8 275.0
H35 C26 C27 H36 241.2 120.0
C26 C8 C9 H34 359.6 354.9
C26 C8 C7 C6 354.7 5.2
C26 C8 C7 H40 174.7 185.2
C11 C12 C13 H26 1.4 0.1
C13 C12 C11 H27 180.0 179.9
C10 C11 C12 H27 44.3 305.0
C9 C10 C11 H30 239.4 240.0
C28 C10 C11 H30 120.6 120.0
C11 C10 C28 H31 180.0 60.0
C11 C10 C28 H32 300.0 180.0
C11 C10 C28 H33 60.0 300.0
H28 C11 C10 H29 119.7 120.0
C11 C12 C13 H27 180.0 180.1
C13 C14 C15 H22 1.8 4.5
C13 C14 C29 H23 180.0 273.8
C13 C14 C29 H24 300.0 33.8
C13 C14 C29 H25 60.0 153.8
C30 C16 C15 H18 118.9 119.9
C14 C15 C16 H18 18.7 5.0
C15 C14 C29 H23 1.3 93.9
C15 C14 C29 H24 121.3 213.8
C15 C14 C29 H25 241.3 333.9
C6 C5 O2 C4 234.2 239.9
O2 C5 C6 H41 59.3 60.1
C6 C5 O2 H42 116.1 119.9
O2 C5 C4 C3 55.4 65.0
C4 C5 O2 H42 241.9 240.0
O2 C5 C4 H44 173.8 185.0
C8 C9 C10 H30 4.6 5.1
C7 C8 C9 H34 178.3 174.9
C8 C7 C6 C5 178.3 180.0
C6 C7 C8 H40 180.0 180.0
C8 C7 C6 H41 358.3 359.9
C9 C10 C11 H28 69.9 65.1
C9 C10 C11 H29 310.2 305.0
C11 C10 C9 H30 120.6 120.0
C28 C10 C9 H30 241.1 240.0
C9 C10 C28 H31 59.8 300.0
C9 C10 C28 H32 179.8 60.0
C9 C10 C28 H33 299.8 180.0
C16 C17 C18 H14 327.5 330.0
C29 C14 C15 H22 180.5 184.4
H23 C29 C14 H24 240.0 240.1
H23 C29 C14 H25 120.0 120.0
H24 C29 C14 H25 240.0 239.9
C8 C7 C6 H40 180.0 180.0
C7 C6 C5 C4 118.9 120.0
C5 C6 C7 H41 180.0 180.1
C7 C6 C5 H42 356.0 359.9
O2 C5 C6 C4 120.3 120.0
O2 C5 C6 H42 243.2 240.1
C5 C6 C7 H40 358.4 0.0
C7 C6 C5 H41 180.0 179.9
C6 C5 C4 C3 173.5 185.0
C4 C5 C6 H42 122.9 120.0
C6 C5 C4 H44 291.9 305.0
C28 C10 C11 H28 311.2 305.1
C28 C10 C11 H29 191.5 185.0
C11 C10 C28 H30 239.3 240.0
C9 C10 C28 H30 119.1 120.0
H31 C28 C10 H32 240.0 240.0
H31 C28 C10 H33 120.0 120.0
H32 C28 C10 H33 240.0 240.0
O2 C5 C4 H42 118.9 120.0
C4 C5 C6 H41 298.9 300.1
C6 C5 C4 H42 237.0 240.0
C25 C4 C5 C3 237.0 239.9
C25 C4 C5 H44 118.6 120.0
C3 C4 C5 H44 241.6 240.0
C5 C4 C3 H48 279.4 295.0
C5 C4 C3 H49 159.9 55.0
O3 C17 C18 H14 148.7 150.0
C31 C18 C17 H14 117.5 120.0
C17 C18 C19 H12 302.5 305.1
C5 C4 C25 C3 123.9 120.1
C25 C4 C5 H42 173.6 185.0
C5 C4 C25 H44 241.5 240.0
C3 C4 C25 H44 117.6 120.0
C25 C4 C3 H48 43.1 55.0
C25 C4 C3 H49 283.6 175.0
C2 C3 C4 H44 281.2 55.1
C4 C3 C2 H48 239.8 119.9
C4 C3 C2 H49 120.3 240.0
H48 C3 C2 H49 240.5 120.1
C1 C2 C3 H48 296.6 60.0
C1 C2 C3 H49 56.0 300.0
C2 C1 O1' H52 181.5 180.0
H50 C2 C1 H51 118.6 119.9
O1 C1 C2 H50 278.9 240.0
O1 C1 C2 H51 160.2 120.0
O1 C1 O1' H52 0.0 359.9
C3 C4 C5 H42 296.5 305.0
C5 C4 C3 H44 118.5 120.0
C25 C4 C3 H44 242.2 240.0
C2 C3 C4 H48 120.3 240.0
C2 C3 C4 H49 239.7 120.0
H48 C3 C4 H49 119.5 240.0
O1' C1 C2 H50 97.5 59.9
O1' C1 C2 H51 338.8 300.0
C17 C18 C31 H14 242.2 240.0
C31 C18 C19 H12 62.7 65.1
C18 C19 C20 H8 309.2 304.9
O4 C19 C18 H12 241.4 240.0
C18 C19 O4 H13 180.0 300.0
C33 C22 C21 H6 302.4 35.0
C33 C22 C21 H7 182.8 155.0
C33 C22 C23 H2 182.2 187.2
C32 C20 C19 H8 118.2 120.0
C19 C20 C32 H9 180.0 175.2
C19 C20 C32 H10 300.0 295.3
C19 C20 C32 H11 60.0 55.2
C19 C20 C21 H6 179.0 55.1
C19 C20 C21 H7 298.6 295.1
C18 C19 O4 H12 117.8 120.0
O4 C19 C20 H8 187.4 184.9
C19 C20 C32 H8 241.8 240.0
C32 C20 C21 H6 302.7 175.1
C32 C20 C21 H7 62.3 55.0
H9 C32 C20 H10 240.0 239.9
H9 C32 C20 H11 120.0 120.0
H10 C32 C20 H11 240.0 240.1
C22 C21 C20 H6 239.8 119.9
C22 C21 C20 H7 120.2 239.9
H6 C21 C20 H7 240.4 120.0
O5 C24 O6 C23 180.5 180.3
O6 C24 C23 H2 173.3 175.8
O6 C24 O5 H1 360.0 0.0
C20 C21 C22 H6 120.2 240.1
C20 C21 C22 H7 239.8 120.1
C21 C22 C23 H2 0.5 7.2
H6 C21 C22 H7 119.6 240.0
C24 C23 C22 H2 180.0 180.0
O6 C24 C23 O5 180.5 180.3
C22 C23 C24 H2 180.0 180.0
C23 C24 O5 H1 180.5 180.3
O6 C24 O5 C23 179.5 179.7
O5 C24 C23 H2 352.8 355.5
H1 O5 C24 C23 180.5 180.3
H3 C33 C22 C21 180.0 95.3
H4 C33 H3 H5 120.0 120.1
H4 C33 C22 C21 300.0 215.4
H3 C33 H4 H5 240.0 239.9
H5 C33 C22 C21 60.0 335.4
H3 C33 H5 H4 120.0 120.1
C20 C21 H6 H7 119.4 239.9
C22 C21 H6 H7 240.6 120.0
C20 C21 H7 H6 240.6 120.0
C22 C21 H7 H6 119.4 240.0
H8 C20 C32 H9 298.1 295.2
H8 C20 C32 H10 58.2 55.3
H8 C20 C32 H11 178.2 175.3
H8 C20 C21 H6 60.2 295.0
H8 C20 C21 H7 179.8 175.0
H9 C32 C20 H8 298.1 295.2
C20 C32 H9 H10 120.0 120.1
C20 C32 H9 H11 240.0 240.0
H10 C32 H9 H11 119.9 120.0
H10 C32 C20 H8 58.2 55.3
C20 C32 H10 H9 240.0 239.9
C20 C32 H10 H11 120.0 119.9
H9 C32 H10 H11 240.1 240.0
H11 C32 C20 H8 178.2 175.3
C20 C32 H11 H9 120.0 120.0
C20 C32 H11 H10 240.0 240.0
H9 C32 H11 H10 120.0 120.0
H12 C19 C20 H8 69.6 64.9
H12 C19 O4 H13 62.2 180.0
H13 O4 C19 H12 62.2 180.0
H14 C18 C19 H12 182.0 185.1
H15 C31 C18 H14 297.8 185.0
H16 C31 H15 H17 120.0 119.9
H16 C31 C18 H14 57.8 304.9
H15 C31 H16 H17 240.0 240.1
H17 C31 C18 H14 177.8 64.9
H15 C31 H17 H16 120.0 119.9
H19 C30 C16 H18 299.0 300.0
H20 C30 H19 H21 120.0 120.1
H20 C30 C16 H18 59.0 60.0
H19 C30 H20 H21 240.0 239.9
H21 C30 C16 H18 179.0 180.0
H19 C30 H21 H20 120.0 120.1
H22 C15 C16 H18 198.7 185.0
H22 C15 C14 C29 180.5 184.4
C14 C29 H23 H24 120.0 119.9
C14 C29 H23 H25 240.0 240.0
H24 C29 H23 H25 120.0 120.0
C14 C29 H24 H23 240.0 240.1
C14 C29 H24 H25 120.0 120.1
H23 C29 H24 H25 240.0 240.0
C14 C29 H25 H23 120.0 120.0
C14 C29 H25 H24 240.0 240.0
H23 C29 H25 H24 120.0 120.0
H26 C13 C12 H27 181.3 180.0
H27 C12 C13 H26 181.3 180.0
H28 C11 C12 H27 164.5 65.0
H28 C11 C10 C28 311.2 305.1
C10 C11 H28 H29 240.4 240.0
H28 C11 C10 H30 190.6 185.1
H29 C11 C12 H27 284.2 185.0
H29 C11 C10 C28 191.5 185.0
C10 C11 H29 H28 119.6 120.0
H29 C11 C10 H30 70.9 65.0
C11 C10 H30 C28 121.3 120.0
H30 C10 C11 H28 190.6 185.1
H30 C10 C11 H29 70.9 65.0
H30 C10 C28 H31 300.7 180.0
H30 C10 C28 H32 60.7 300.0
H30 C10 C28 H33 180.7 60.0
H31 C28 C10 H30 300.7 180.0
C10 C28 H31 H32 120.0 120.0
C10 C28 H31 H33 240.0 240.0
H32 C28 H31 H33 120.0 120.0
H32 C28 C10 H30 60.7 300.0
C10 C28 H32 H31 240.0 240.0
C10 C28 H32 H33 120.0 120.0
H31 C28 H32 H33 240.0 240.0
H33 C28 C10 H30 180.7 60.0
C10 C28 H33 H31 120.0 120.0
C10 C28 H33 H32 240.0 240.0
H31 C28 H33 H32 120.0 120.0
H34 C9 C10 H30 184.6 185.1
C27 C26 H35 H36 118.2 240.0
H35 C26 C8 C7 64.2 35.0
C27 C26 H36 H35 241.8 120.0
H36 C26 C8 C7 305.4 155.0
H37 C27 C26 H35 300.6 60.0
H37 C27 C26 H36 59.4 300.0
H38 C27 H37 H39 120.0 120.0
H38 C27 C26 H35 60.6 180.0
H38 C27 C26 H36 179.4 60.0
H37 C27 H38 H39 240.0 240.0
H39 C27 C26 H35 180.5 300.0
H39 C27 C26 H36 299.4 180.0
H37 C27 H39 H38 120.0 120.0
C8 C7 H40 C6 180.0 180.0
H40 C7 C6 C5 358.4 0.0
H40 C7 C6 H41 178.4 179.9
C7 C6 H41 C5 180.0 180.1
H41 C6 C7 H40 178.4 179.9
H41 C6 C5 C4 298.9 300.1
H41 C6 C5 H42 176.0 180.0
O2 C5 H42 C4 241.6 240.0
C6 C5 H42 C4 128.0 120.0
H42 C5 C6 H41 176.0 180.0
H42 C5 C4 C3 296.5 305.0
H42 C5 C4 H44 55.0 65.0
H43 O2 C5 C4 305.8 60.0
H43 O2 C5 H42 63.9 180.0
C5 C4 H44 C3 239.4 240.0
H44 C4 C5 H42 55.0 65.0
C25 C4 H44 C3 118.9 120.0
H44 C4 C3 H48 160.9 175.0
H44 C4 C3 H49 41.5 295.0
H45 C25 C4 C3 56.1 180.0
H45 C25 C4 H44 298.5 60.0
H46 C25 H45 H47 120.0 120.0
H46 C25 C4 C3 176.2 300.0
H46 C25 C4 H44 58.5 180.0
H45 C25 H46 H47 240.0 240.0
H47 C25 C4 C3 296.2 60.0
H47 C25 C4 H44 178.5 300.0
H45 C25 H47 H46 120.0 120.0
C2 C3 H48 H49 119.2 239.9
H48 C3 C4 H44 160.9 175.0
C4 C3 H48 H49 240.8 119.9
C2 C3 H49 H48 240.8 120.1
H49 C3 C4 H44 41.5 295.0
C4 C3 H49 H48 119.2 240.1
H50 C2 C3 H48 57.2 180.0
H50 C2 C3 H49 176.7 60.0
H50 C2 C1 O1' 97.5 59.9
C1 C2 H50 H51 242.1 240.0
H51 C2 C3 H48 175.9 300.0
H51 C2 C3 H49 295.3 180.0
H51 C2 C1 O1' 338.8 300.0
C1 C2 H51 H50 117.9 120.0