PDB Chemical Component LLP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LLP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.356 1.317
N1 C6 1.346 1.319
C2 C2' 1.530 1.507
C2 C3 1.386 1.388
C3 O3 1.297 1.357
C3 C4 1.420 1.405
C4 C4' 1.468 1.476
C4 C5 1.409 1.400
C4' NZ 1.300 1.293
C5 C6 1.385 1.379
C5 C5' 1.513 1.507
C5' OP4 1.445 1.429
OP4 P 1.611 1.610
P OP1 1.504 1.480
P OP2 1.503 1.611
P OP3 1.509 1.609
N CA 1.468 1.469
CA CB 1.508 1.530
CA C 1.510 1.507
CB CG 1.538 1.530
CG CD 1.508 1.530
CD CE 1.518 1.530
CE NZ 1.489 1.465
C O 1.268 1.208
C OXT 1.330 1.342
C2' H2'1 1.100 1.090
C2' H2'2 1.100 1.090
C2' H2'3 1.100 1.091
O3 HO3 0.950 0.967
C4' H4'1 1.080 1.080
C6 H6 1.080 1.080
C5' H5'1 1.101 1.090
C5' H5'2 1.100 1.089
OP2 HOP2 0.950 0.966
OP3 HOP3 0.950 0.967
N H 1.000 1.009
N H2 1.000 1.009
CA HA 1.100 1.090
CB HB2 1.099 1.090
CB HB3 1.100 1.090
CG HG2 1.100 1.090
CG HG3 1.100 1.090
CD HD2 1.100 1.090
CD HD3 1.100 1.090
CE HE2 1.100 1.090
CE HE3 1.100 1.090
OXT HXT 0.950 0.966

Bond Angles for LLP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 126.5 122.2
N1 C2 C2' 120.7 119.6
N1 C2 C3 114.4 120.8
N1 C6 C5 120.5 121.1
N1 C6 H6 119.8 119.5
C2' C2 C3 124.9 119.6
C2 C2' H2'1 109.5 109.5
C2 C2' H2'2 109.5 109.5
C2 C2' H2'3 109.5 109.4
C2 C3 O3 121.4 120.6
C2 C3 C4 122.2 118.8
O3 C3 C4 116.4 120.6
C3 O3 HO3 109.5 114.0
C3 C4 C4' 120.2 120.9
C3 C4 C5 119.7 118.1
C4' C4 C5 120.0 121.0
C4 C4' NZ 111.8 120.0
C4 C4' H4'1 124.1 119.9
C4 C5 C6 116.7 119.1
C4 C5 C5' 121.9 120.4
C4' NZ CE 127.8 120.0
NZ C4' H4'1 124.1 120.0
C6 C5 C5' 121.4 120.5
C5 C6 H6 119.8 119.4
C5 C5' OP4 112.0 109.4
C5 C5' H5'1 108.8 109.5
C5 C5' H5'2 108.8 109.5
C5' OP4 P 116.1 123.0
OP4 C5' H5'1 108.8 109.5
OP4 C5' H5'2 108.8 109.5
OP4 P OP1 110.1 109.5
OP4 P OP2 108.3 109.4
OP4 P OP3 108.9 109.5
OP1 P OP2 111.5 109.5
OP1 P OP3 108.0 109.5
OP2 P OP3 110.1 109.5
P OP2 HOP2 109.5 114.0
P OP3 HOP3 109.5 114.0
N CA CB 108.9 109.5
N CA C 106.8 109.5
CA N H 109.5 111.0
CA N H2 109.5 111.0
N CA HA 106.1 109.5
CB CA C 122.7 109.5
CA CB CG 112.5 109.5
CB CA HA 105.6 109.5
CA CB HB2 108.7 109.5
CA CB HB3 108.7 109.5
CA C O 115.4 120.0
CA C OXT 125.0 120.0
C CA HA 105.7 109.5
CB CG CD 115.3 109.5
CG CB HB2 108.7 109.5
CG CB HB3 108.7 109.5
CB CG HG2 108.0 109.5
CB CG HG3 108.0 109.5
CG CD CE 113.1 109.5
CD CG HG2 108.0 109.5
CD CG HG3 108.0 109.4
CG CD HD2 108.6 109.5
CG CD HD3 108.6 109.5
CD CE NZ 112.6 109.5
CE CD HD2 108.6 109.5
CE CD HD3 108.6 109.4
CD CE HE2 108.7 109.5
CD CE HE3 108.7 109.5
NZ CE HE2 108.7 109.4
NZ CE HE3 108.7 109.5
O C OXT 119.0 120.0
C OXT HXT 109.5 117.0
H2'1 C2' H2'2 109.5 109.5
H2'1 C2' H2'3 109.4 109.5
H2'2 C2' H2'3 109.5 109.4
H5'1 C5' H5'2 109.5 109.5
H N H2 109.4 110.9
HB2 CB HB3 109.5 109.5
HG2 CG HG3 109.5 109.5
HD2 CD HD3 109.5 109.5
HE2 CE HE3 109.5 109.4

Torsion Angles for LLP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 0.5 0.0
C2 N1 C6 H6 180.6 180.0
C2' C2 N1 C3 180.9 180.0
N1 C2 C2' H2'1 0.0 90.0
N1 C2 C2' H2'2 120.0 210.0
N1 C2 C2' H2'3 240.0 330.0
N1 C2 C3 O3 180.6 180.0
N1 C2 C3 C4 0.6 0.0
C6 N1 C2 C2' 180.1 180.0
C6 N1 C2 C3 359.2 360.0
C4 C5 C6 N1 360.0 359.9
N1 C6 C5 C5' 179.9 180.0
C5 C6 N1 H6 180.0 180.0
C2' C2 N1 C6 180.1 180.0
N1 C2 C2' C3 179.0 180.0
C2' C2 C3 O3 359.7 360.0
C2' C2 C3 C4 179.7 180.0
H2'1 C2' C2 H2'2 240.0 239.9
H2'1 C2' C2 H2'3 120.0 120.0
H2'2 C2' C2 H2'3 240.0 240.1
C3 C2 N1 C6 359.2 360.0
N1 C2 C3 C2' 180.9 180.0
C3 C2 C2' H2'1 181.0 270.0
C3 C2 C2' H2'2 301.0 30.1
C3 C2 C2' H2'3 61.0 150.0
O3 C3 C2 C4 180.0 180.0
C2 C3 O3 HO3 180.0 90.0
C2 C3 C4 C4' 180.2 180.1
C2 C3 C4 C5 359.8 359.9
C2 C3 O3 C4 180.0 180.0
O3 C3 C4 C4' 0.2 0.1
O3 C3 C4 C5 179.8 179.9
C2 C3 C4 O3 180.0 180.0
C4 C3 O3 HO3 0.0 270.0
C4' C4 C3 C5 180.4 180.1
C3 C4 C4' NZ 23.9 359.9
C3 C4 C4' H4'1 203.9 180.0
C3 C4 C5 C6 359.9 0.1
C3 C4 C5 C5' 179.9 180.0
C3 C4 C4' C5 179.6 179.9
C4' C4 C5 C6 179.5 180.0
C4' C4 C5 C5' 359.5 359.9
C4 C4' NZ CE 170.0 180.1
NZ C4' C4 H4'1 180.0 179.9
N1 C6 C5 C4 360.0 359.9
C3 C4 C5 C4' 180.4 180.1
C5 C4 C4' NZ 204.3 180.0
C5 C4 C4' H4'1 24.3 0.2
C6 C5 C4 C5' 180.0 180.1
C4 C5 C6 H6 179.9 180.0
C4 C5 C5' OP4 56.3 180.0
C4 C5 C5' H5'1 176.7 300.0
C4 C5 C5' H5'2 295.9 60.0
NZ C4' C4 C5 204.3 180.0
C4 C4' NZ H4'1 180.0 180.1
CD CE NZ C4' 266.0 115.0
C4' NZ CE HE2 145.6 355.0
C4' NZ CE HE3 26.5 235.1
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5' 180.0 179.9
C6 C5 C5' OP4 236.3 360.0
C6 C5 C5' H5'1 356.7 119.9
C6 C5 C5' H5'2 115.9 239.9
C4 C5 C5' C6 180.0 180.1
C5' C5 C6 H6 359.9 0.1
C5 C5' OP4 P 211.2 180.0
OP4 C5' C5 H5'1 239.6 240.0
OP4 C5' C5 H5'2 120.4 120.0
H5'1 C5' C5 H5'2 240.8 240.0
C5 C5' OP4 H5'1 120.4 120.0
C5 C5' OP4 H5'2 239.6 240.0
C5' OP4 P OP1 191.0 305.0
C5' OP4 P OP2 68.9 65.0
C5' OP4 P OP3 309.2 185.0
H5'1 C5' OP4 H5'2 119.2 120.0
P OP4 C5' H5'1 90.8 60.0
P OP4 C5' H5'2 331.6 300.0
OP1 P OP4 OP2 122.1 240.0
OP1 P OP4 OP3 241.8 120.0
OP2 P OP4 OP3 119.7 240.0
OP4 P OP2 HOP2 121.2 60.0
OP4 P OP3 HOP3 240.5 180.0
OP4 P OP1 OP2 239.8 120.0
OP4 P OP1 OP3 118.7 240.0
OP2 P OP1 OP3 238.9 120.0
OP1 P OP2 HOP2 360.0 180.0
OP1 P OP3 HOP3 0.0 59.9
OP4 P OP2 OP1 121.2 240.0
OP4 P OP2 OP3 241.1 120.0
OP1 P OP2 OP3 119.9 240.0
OP2 P OP3 HOP3 122.0 299.9
OP4 P OP3 OP1 240.5 120.0
OP4 P OP3 OP2 118.5 240.0
OP1 P OP3 OP2 238.0 120.0
OP3 P OP2 HOP2 240.1 300.0
CB CA N C 225.6 240.0
N CA CB CG 276.4 295.0
CB CA N HA 113.3 120.0
N CA CB HB2 36.8 55.0
N CA CB HB3 155.9 175.0
N CA C O 74.1 339.9
N CA C OXT 262.6 160.0
C CA N HA 247.7 240.0
H N CA H2 240.0 236.1
N CA CB C 125.6 120.0
CB CA N H 180.0 176.1
CB CA N H2 300.0 300.0
N CA CB HA 246.4 240.0
CB CA C O 200.7 99.9
CB CA C OXT 29.1 280.0
C CA CB HA 120.8 120.0
CA CB CG CD 102.5 180.0
CG CB CA HB2 239.6 240.0
CG CB CA HB3 120.5 120.0
CA CB CG HG2 223.4 300.0
CA CB CG HG3 341.7 60.0
HB2 CB CA HB3 240.9 240.0
N CA C CB 233.4 240.0
C CA N H 314.3 296.1
C CA N H2 74.3 60.0
N CA C HA 112.6 120.0
C CA CB CG 150.8 175.0
CB CA C HA 239.2 240.0
C CA CB HB2 271.2 295.0
C CA CB HB3 30.3 55.0
O C CA OXT 171.6 179.9
CA C OXT HXT 171.3 180.0
CG CB CA C 150.8 175.0
CG CB CA HA 30.0 55.0
CA CB CG HB2 120.4 120.0
CA CB CG HB3 239.6 240.0
CB CG CD CE 146.9 180.0
CD CG CB HG2 239.2 240.0
CD CG CB HG3 120.8 119.9
CB CG CD HD2 267.4 300.0
CB CG CD HD3 26.4 60.1
HB2 CB CG HB3 119.1 120.0
HG2 CG CB HG3 241.7 240.0
CD CG CB HB2 342.1 60.0
CD CG CB HB3 223.0 299.9
CB CG CD HG2 120.8 120.1
CB CG CD HG3 239.2 240.0
CG CD CE NZ 248.7 180.1
CE CD CG HD2 239.5 240.0
CE CD CG HD3 120.5 119.9
CG CD CE HE2 9.1 300.0
CG CD CE HE3 128.2 60.0
HG2 CG CD HG3 118.3 120.0
HD2 CD CG HD3 241.1 239.9
C4' NZ CE CD 266.0 115.0
CE CD CG HG2 26.1 59.9
CE CD CG HG3 267.8 300.0
CG CD CE HD2 120.5 120.0
CG CD CE HD3 239.5 240.0
NZ CE CD HE2 239.6 240.0
NZ CE CD HE3 120.5 120.1
HD2 CD CE HD3 118.9 120.0
HE2 CE CD HE3 240.9 240.0
CE NZ C4' H4'1 350.0 359.9
NZ CE CD HD2 128.1 60.0
NZ CE CD HD3 9.2 300.0
CD CE NZ HE2 120.5 120.0
CD CE NZ HE3 239.5 240.0
HE2 CE NZ HE3 119.1 119.9
CA C O OXT 187.9 180.1
O C CA HA 321.5 220.0
O C OXT HXT 0.0 0.1
CA C OXT O 171.3 179.9
OXT C CA HA 149.9 40.1
H2'1 C2' C2 C3 181.0 270.0
C2 C2' H2'1 H2'2 120.0 120.0
C2 C2' H2'1 H2'3 240.0 240.0
H2'2 C2' H2'1 H2'3 120.0 120.0
H2'2 C2' C2 C3 301.0 30.1
C2 C2' H2'2 H2'1 239.9 239.9
C2 C2' H2'2 H2'3 120.0 119.9
H2'1 C2' H2'2 H2'3 240.1 240.0
H2'3 C2' C2 C3 61.0 150.0
C2 C2' H2'3 H2'1 120.0 120.0
C2 C2' H2'3 H2'2 240.0 240.1
H2'1 C2' H2'3 H2'2 120.0 120.0
HO3 O3 C3 C4 0.0 270.0
H4'1 C4' C4 C5 24.3 0.2
C4 C4' H4'1 NZ 180.0 179.9
H4'1 C4' NZ CE 350.0 359.9
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C5' 359.9 0.1
C5 C5' H5'1 OP4 237.6 240.0
C5 C5' H5'1 H5'2 118.8 120.0
H5'1 C5' OP4 P 90.8 60.0
OP4 C5' H5'1 H5'2 241.2 240.0
C5 C5' H5'2 OP4 122.4 120.0
C5 C5' H5'2 H5'1 241.2 240.0
H5'2 C5' OP4 P 331.6 300.0
OP4 C5' H5'2 H5'1 118.8 120.0
HOP2 OP2 P OP3 240.1 300.0
H N CA CB 180.0 176.1
H N CA C 314.3 296.1
CA N H H2 120.0 124.0
H N CA HA 66.7 56.1
H2 N CA CB 300.0 300.0
H2 N CA C 74.3 60.0
CA N H2 H 240.0 236.1
H2 N CA HA 186.7 180.0
N CA HA CB 115.6 120.0
N CA HA C 246.9 240.0
HA CA N H 66.7 56.1
HA CA N H2 186.7 180.0
CB CA HA C 131.3 120.0
HA CA CB CG 30.0 55.0
HA CA CB HB2 150.4 174.9
HA CA CB HB3 269.5 295.0
HA CA C O 321.5 220.0
HA CA C OXT 149.9 40.1
HB2 CB CA C 271.2 295.0
CA CB HB2 CG 237.2 240.0
HB2 CB CA HA 150.4 174.9
CA CB HB2 HB3 118.6 120.0
HB2 CB CG CD 342.1 60.0
CG CB HB2 HB3 241.4 240.0
HB2 CB CG HG2 102.9 180.0
HB2 CB CG HG3 221.2 300.0
HB3 CB CA C 30.3 55.0
CA CB HB3 CG 122.8 120.0
HB3 CB CA HA 269.5 295.0
CA CB HB3 HB2 241.4 240.0
HB3 CB CG CD 223.0 299.9
CG CB HB3 HB2 118.6 120.0
HB3 CB CG HG2 343.8 60.0
HB3 CB CG HG3 102.1 180.0
CB CG HG2 CD 234.7 240.0
HG2 CG CB HB2 102.9 180.0
HG2 CG CB HB3 343.8 60.0
CB CG HG2 HG3 117.4 120.0
HG2 CG CD CE 26.1 59.9
CD CG HG2 HG3 242.6 240.1
HG2 CG CD HD2 146.6 179.9
HG2 CG CD HD3 265.5 300.0
CB CG HG3 CD 125.3 120.0
HG3 CG CB HB2 221.2 300.0
HG3 CG CB HB3 102.1 180.0
CB CG HG3 HG2 242.7 239.9
HG3 CG CD CE 267.8 300.0
CD CG HG3 HG2 117.4 120.0
HG3 CG CD HD2 28.3 60.0
HG3 CG CD HD3 147.2 180.0
CG CD HD2 CE 236.7 240.0
HD2 CD CG HG2 146.6 179.9
HD2 CD CG HG3 28.3 60.0
CG CD HD2 HD3 118.3 120.0
HD2 CD CE NZ 128.1 60.0
CE CD HD2 HD3 241.6 240.0
HD2 CD CE HE2 248.6 180.0
HD2 CD CE HE3 7.7 300.0
CG CD HD3 CE 123.3 120.0
HD3 CD CG HG2 265.5 300.0
HD3 CD CG HG3 147.2 180.0
CG CD HD3 HD2 241.7 239.9
HD3 CD CE NZ 9.2 300.0
CE CD HD3 HD2 118.4 120.0
HD3 CD CE HE2 129.6 60.0
HD3 CD CE HE3 248.8 180.0
CD CE HE2 NZ 237.1 240.0
HE2 CE CD HD2 248.6 180.0
HE2 CE CD HD3 129.6 60.0
CD CE HE2 HE3 118.6 120.0
NZ CE HE2 HE3 241.5 240.0
CD CE HE3 NZ 122.9 120.1
HE3 CE CD HD2 7.7 300.0
HE3 CE CD HD3 248.8 180.0
CD CE HE3 HE2 241.4 240.0
NZ CE HE3 HE2 118.5 119.9