PDB Chemical Component LLM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LLM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O20 C20 1.421 1.429
O16 C16 1.444 1.435
O16 C17 1.439 1.425
C18 C17 1.511 1.527
C18 C19 1.512 1.530
O19 C19 1.432 1.450
O19 C1 1.361 1.350
C20 C19 1.534 1.533
C20 C21 1.522 1.507
C16 C17 1.499 1.529
C16 C15 1.521 1.527
C2 C1 1.389 1.464
C2 C3 1.391 1.328
C22 C21 1.523 1.310
C22 C23 1.518 1.507
C1 O1 1.228 1.213
C15 O15 1.425 1.423
C15 C14 1.516 1.523
O27 C23 1.439 1.434
O27 C27 1.447 1.429
C3 C4 1.385 1.506
C23 C24 1.536 1.531
C14 C13 1.388 1.504
C24 C25 1.410 1.504
C27 C26 1.402 1.502
C4 C5 1.530 1.531
C25 C26 1.397 1.300
C25 C30 1.380 1.507
C29 C13 1.387 1.307
C13 C12 1.397 1.511
C5 C6 1.403 1.506
C5 O9 1.449 1.422
C6 C7 1.398 1.301
C12 C11 1.537 1.528
C7 C8 1.408 1.500
O9 C9 1.439 1.425
C10 C11 1.517 1.529
C10 C9 1.507 1.528
C11 C28 1.529 1.530
C9 C8 1.528 1.520
C18 H1 1.100 1.090
C18 H2 1.100 1.090
C17 H3 1.100 1.094
C16 H4 1.100 1.090
C15 H5 1.100 1.100
O15 H6 0.950 0.966
C14 H7 1.100 1.098
C14 H8 1.100 1.096
C29 H10 1.080 1.080
C29 H11 1.080 1.080
C12 H13 1.100 1.091
C12 H14 1.100 1.093
C11 H15 1.101 1.088
C28 H16 1.100 1.090
C28 H17 1.100 1.090
C28 H18 1.100 1.090
C10 H19 1.100 1.089
C10 H20 1.100 1.093
C9 H21 1.100 1.099
C8 H22 1.100 1.087
C8 H23 1.100 1.087
C7 H24 1.080 1.080
C6 H25 1.080 1.084
C5 H26 1.100 1.092
C4 H27 1.101 1.093
C4 H28 1.100 1.086
C3 H29 1.080 1.088
C2 H30 1.080 1.091
C19 H31 1.100 1.089
C20 H32 1.100 1.090
O20 H33 0.950 0.967
C21 H34 1.080 1.080
C22 H36 1.080 1.079
C23 H38 1.100 1.090
C24 H39 1.100 1.090
C24 H40 1.100 1.090
C27 H41 1.101 1.090
C27 H42 1.100 1.090
C26 H43 1.080 1.081
C30 H44 1.100 1.090
C30 H45 1.100 1.090
C30 H46 1.099 1.090

Bond Angles for LLM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O20 C20 C21 109.7 109.5
O20 C20 H32 110.4 109.5
O16 C16 C15 115.8 116.7
O16 C16 H4 119.0 117.3
O16 C17 H3 119.3 118.2
C17 C18 C19 109.4 109.9
C17 C18 H1 109.5 109.0
C17 C18 H2 109.5 109.2
C18 C17 H3 117.8 115.2
C18 C19 O19 108.9 109.5
C19 C18 H1 109.5 109.4
C19 C18 H2 109.5 109.6
C18 C19 H31 109.2 110.0
O19 C19 H31 110.4 109.9
C20 C19 H31 108.9 109.0
C21 C20 H32 108.9 109.5
C20 C21 H34 121.9 120.0
C16 C17 H3 118.0 118.0
C16 C15 O15 109.3 110.7
C16 C15 C14 109.0 111.0
C15 C16 H4 117.4 116.1
C16 C15 H5 109.2 108.0
C2 C1 O1 119.5 120.8
C1 C2 H30 117.1 118.4
C2 C3 H29 117.9 118.3
C22 C21 H34 121.9 120.1
C22 C23 C24 110.1 109.7
C23 C22 H36 123.5 120.0
C22 C23 H38 108.9 109.7
O15 C15 C14 109.5 111.1
O15 C15 H5 110.5 107.7
C15 O15 H6 109.5 114.0
C15 C14 C13 110.2 112.3
C14 C15 H5 109.3 108.2
C15 C14 H7 109.3 109.3
C15 C14 H8 109.3 109.3
O27 C23 H38 110.0 109.7
O27 C27 C26 113.7 110.2
O27 C27 H41 108.4 109.3
O27 C27 H42 108.4 109.4
C3 C4 H27 109.2 109.1
C3 C4 H28 109.2 110.6
C23 C24 C25 114.3 109.6
C24 C23 H38 108.7 109.7
C23 C24 H39 108.2 109.5
C23 C24 H40 108.2 109.4
C14 C13 C12 119.4 119.4
C13 C14 H7 109.3 108.8
C13 C14 H8 109.3 109.2
C24 C25 C26 123.8 122.5
C24 C25 C30 118.0 118.7
C25 C24 H39 108.3 109.5
C25 C24 H40 108.3 109.5
C26 C27 H41 108.4 109.3
C26 C27 H42 108.4 109.4
C27 C26 H43 120.7 118.6
C4 C5 H26 107.6 108.4
C25 C26 H43 120.7 118.5
C25 C30 H44 109.5 109.5
C25 C30 H45 109.4 109.5
C25 C30 H46 109.5 109.5
C29 C13 C12 121.3 119.4
C13 C12 C11 113.2 110.5
C13 C12 H13 108.5 108.7
C13 C12 H14 108.5 108.7
C5 C6 H25 120.5 119.3
C6 C7 H24 118.2 118.4
C12 C11 C28 109.7 109.5
C11 C12 H13 108.5 109.8
C11 C12 H14 108.5 109.6
C12 C11 H15 108.8 110.4
C7 C8 H22 108.2 108.9
C7 C8 H23 108.1 108.8
O9 C9 C8 107.1 109.5
O9 C9 H21 111.4 108.6
C10 C11 H15 109.1 108.7
C10 C9 C8 109.0 110.4
C9 C10 H19 109.3 109.9
C9 C10 H20 109.3 109.3
C10 C9 H21 110.4 108.6
C28 C11 H15 108.9 108.7
C11 C28 H16 109.5 109.5
C11 C28 H17 109.5 109.5
C11 C28 H18 109.5 109.5
C8 C9 H21 110.1 108.5
C9 C8 H22 108.1 108.8
C9 C8 H23 108.1 108.8
H1 C18 H2 109.5 109.7
H7 C14 H8 109.5 107.8
H10 C29 H11 120.0 120.0
H13 C12 H14 109.5 109.6
H16 C28 H17 109.5 109.5
H16 C28 H18 109.5 109.4
H17 C28 H18 109.5 109.5
H19 C10 H20 109.5 109.1
H22 C8 H23 109.5 108.9
H27 C4 H28 109.5 109.2
H39 C24 H40 109.5 109.4
H41 C27 H42 109.5 109.3
H44 C30 H45 109.5 109.5
H44 C30 H46 109.5 109.5
H45 C30 H46 109.5 109.5

Torsion Angles for LLM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O20 C20 C19 H31 196.0 175.3
C21 C20 O20 H32 120.0 120.1
O20 C20 C21 H34 198.4 59.9
C16 O16 C17 H3 106.8 107.1
O16 C16 C17 H3 251.0 252.6
O16 C16 C15 O15 38.8 71.7
O16 C16 C15 C14 158.5 195.6
C15 C16 O16 H4 148.4 144.5
O16 C16 C15 H5 277.8 314.0
O16 C17 C18 C19 143.5 179.3
O16 C17 C18 H1 263.5 299.2
O16 C17 C18 H2 23.6 59.0
C18 C17 O16 H3 148.8 144.9
C16 C17 O16 H3 253.2 252.9
O16 C17 C18 H3 210.7 214.1
C17 C18 C19 O19 273.3 211.0
C19 C18 C17 H1 240.0 240.1
C19 C18 C17 H2 120.0 120.3
C17 C18 C19 H31 33.9 331.9
C16 C17 C18 H3 145.2 147.6
H1 C18 C17 H2 240.0 240.2
C17 C18 C19 H1 120.0 119.6
C17 C18 C19 H2 240.0 239.9
C19 C18 C17 H3 292.8 325.3
O19 C19 C18 H31 239.4 239.2
C20 C19 C18 H31 119.0 119.6
H1 C18 C19 H2 120.1 120.3
O19 C19 C18 H1 153.3 91.4
O19 C19 C18 H2 33.2 331.1
C18 C19 O19 H31 119.9 120.9
C20 C19 O19 H31 239.7 240.6
C18 C19 O19 C1 139.1 127.9
O19 C1 C2 H30 360.0 3.8
C20 C19 C18 H1 33.0 331.9
C20 C19 C18 H2 272.9 211.5
C18 C19 C20 H31 240.8 239.7
O19 C19 C20 H31 121.2 120.0
O20 C20 C21 H32 239.1 239.9
C21 C20 C19 H31 316.3 295.3
C22 C21 C20 H34 180.0 180.1
O16 C17 C16 H3 109.0 107.4
C16 C17 C18 C19 78.0 112.9
C16 C17 C18 H1 198.0 232.8
C16 C17 C18 H2 318.0 352.6
C18 C17 C16 H3 214.9 213.3
O16 C16 C15 H4 211.1 215.1
C15 C16 C17 H3 357.0 357.4
O15 C15 C16 C14 240.3 236.1
O15 C15 C16 H5 121.0 117.7
C16 C15 O15 H6 180.0 180.0
C16 C15 C14 C13 186.0 304.3
C14 C15 C16 H5 240.7 241.6
C16 C15 C14 H7 306.1 65.2
C16 C15 C14 H8 65.9 182.9
C1 C2 C3 H29 181.2 181.6
C2 C3 C4 H27 14.2 150.1
C2 C3 C4 H28 133.8 30.0
C22 C21 C20 H32 139.2 0.1
C20 C21 C22 H34 180.0 179.9
C23 C22 C21 H34 358.7 0.0
O27 C23 C22 H38 121.5 120.5
C22 C23 C24 C25 200.2 192.4
C24 C23 C22 H38 240.9 239.4
C22 C23 C24 H39 321.0 312.5
C22 C23 C24 H40 79.5 72.4
O1 C1 C2 H30 179.2 183.4
C16 C15 O15 C14 119.3 123.8
O15 C15 C16 H4 187.7 216.6
C16 C15 O15 H5 239.8 242.2
O15 C15 C14 C13 305.6 67.9
C14 C15 O15 H5 120.5 118.4
O15 C15 C14 H7 65.7 188.8
O15 C15 C14 H8 185.5 306.5
C16 C15 C14 O15 240.5 236.4
C14 C15 C16 H4 307.4 340.5
C16 C15 C14 H5 119.2 118.3
O15 C15 C14 H5 238.8 241.9
C14 C15 O15 H6 60.6 56.3
C15 C14 C13 C12 119.1 150.0
C13 C14 C15 H7 239.9 239.1
C13 C14 C15 H8 120.1 121.4
H7 C14 C15 H8 240.2 242.3
O27 C23 C22 H36 307.4 186.1
C22 C23 O27 H38 239.1 239.5
O27 C23 C24 C25 321.9 312.1
C24 C23 O27 H38 118.3 119.8
O27 C23 C24 H39 82.6 72.2
O27 C23 C24 H40 201.1 192.1
C27 O27 C23 H38 302.3 308.4
C26 C27 O27 H41 239.4 239.8
C26 C27 O27 H42 120.6 120.3
O27 C27 C26 H43 202.1 195.5
H41 C27 O27 H42 241.3 240.4
C3 C4 C5 H26 42.9 34.8
H27 C4 C3 H28 240.3 120.0
C24 C23 C22 H36 66.9 305.0
C22 C23 C24 H38 119.2 120.6
O27 C23 C24 H38 240.8 240.3
C23 C24 C25 C26 10.3 16.7
C23 C24 C25 C30 188.4 196.7
C25 C24 C23 H39 239.3 239.9
C25 C24 C23 H40 120.7 120.0
H39 C24 C23 H40 241.5 240.1
C13 C14 C15 H5 66.8 186.0
C15 C14 C13 H7 120.1 121.1
C15 C14 C13 H8 239.9 238.6
C29 C13 C14 C12 179.8 180.3
C14 C13 C12 C11 142.5 125.0
C14 C13 C12 H13 263.0 245.6
C14 C13 C12 H14 21.9 4.8
H7 C14 C13 H8 119.8 117.5
C25 C24 C23 H38 81.0 71.8
C23 C24 C25 H39 120.7 120.1
C23 C24 C25 H40 239.3 240.0
C24 C25 C26 H43 178.4 179.6
C24 C25 C30 H44 180.0 90.0
C24 C25 C30 H45 300.0 210.0
C24 C25 C30 H46 60.0 330.0
H39 C24 C25 H40 118.6 119.9
O27 C27 C26 H41 120.6 120.1
O27 C27 C26 H42 239.4 239.7
C24 C25 C26 C27 358.4 359.6
C25 C26 C27 H43 180.0 180.0
H41 C27 C26 H42 118.7 119.6
C4 C5 C6 H25 40.0 42.4
C24 C25 C26 C30 178.1 180.0
C26 C25 C24 H39 249.6 256.6
C26 C25 C24 H40 131.0 136.6
C25 C26 C27 H41 261.5 255.4
C25 C26 C27 H42 142.8 135.8
C27 C26 C25 H43 180.0 180.0
C24 C25 C30 C26 181.8 180.0
C30 C25 C24 H39 67.6 76.6
C30 C25 C24 H40 309.1 316.6
C30 C25 C26 H43 0.3 359.6
H44 C30 C25 H45 240.0 240.0
H44 C30 C25 H46 120.0 120.0
H45 C30 C25 H46 240.0 240.0
C14 C13 C29 C12 180.2 179.7
C29 C13 C14 H7 178.8 209.2
C29 C13 C14 H8 59.0 91.7
C29 C13 C12 C11 322.7 304.7
C29 C13 C12 H13 83.3 65.3
C29 C13 C12 H14 202.2 184.5
C12 C13 C14 H7 359.0 28.9
C12 C13 C14 H8 239.2 271.4
C13 C12 C11 C28 73.5 262.3
C11 C12 C13 H13 239.4 239.4
C11 C12 C13 H14 120.5 120.3
C13 C12 C11 H15 192.5 21.9
H13 C12 C13 H14 241.1 240.8
C5 C6 C7 H24 181.7 180.3
C5 O9 C9 H21 179.7 180.8
C6 C7 C8 H22 107.5 227.4
C6 C7 C8 H23 226.0 108.7
C13 C12 C11 H13 120.6 119.9
C13 C12 C11 H14 239.5 240.3
C10 C11 C12 H15 120.2 120.0
C28 C11 C12 H15 241.0 240.4
C12 C11 C28 H16 180.0 60.0
C12 C11 C28 H17 300.0 180.0
C12 C11 C28 H18 60.0 300.0
H13 C12 C11 H14 118.9 120.4
C7 C8 C9 H21 161.5 157.9
C9 C8 C7 H22 239.2 120.7
C9 C8 C7 H23 120.8 239.3
H22 C8 C7 H23 241.5 118.6
C10 C9 O9 C8 117.7 122.2
O9 C9 C10 H19 331.2 323.8
O9 C9 C10 H20 211.4 204.1
C10 C9 O9 H21 238.1 240.6
C8 C9 O9 H21 120.5 118.3
O9 C9 C8 H22 279.4 160.3
O9 C9 C8 H23 161.0 278.8
C10 C11 C12 H13 192.1 22.0
C10 C11 C12 H14 73.2 261.6
C12 C11 C10 H15 240.0 239.1
C28 C11 C10 H15 118.8 118.7
C10 C11 C28 H16 302.1 180.6
C10 C11 C28 H17 62.1 300.6
C10 C11 C28 H18 182.1 60.6
O9 C9 C10 C8 243.5 238.3
O9 C9 C10 H21 122.5 119.4
C9 C10 C11 H15 16.0 339.4
C8 C9 C10 H21 239.0 241.2
C10 C9 C8 H22 161.9 37.5
C10 C9 C8 H23 43.4 156.1
H19 C10 C9 H20 119.8 119.7
C28 C11 C12 H13 312.9 142.4
C28 C11 C12 H14 194.0 22.0
C12 C11 C28 H15 118.9 120.6
C10 C11 C28 H15 241.1 241.3
H16 C28 C11 H17 240.0 240.0
H16 C28 C11 H18 120.0 120.0
H17 C28 C11 H18 240.0 240.0
C7 C8 C9 H22 120.8 239.2
C7 C8 C9 H23 239.2 120.7
O9 C9 C8 H21 238.7 241.6
C8 C9 C10 H19 87.7 85.6
C8 C9 C10 H20 327.9 325.9
C10 C9 C8 H21 121.2 118.9
H22 C8 C9 H23 118.5 241.5
C17 C18 H1 C19 240.1 239.8
C17 C18 H1 H2 120.0 119.5
H1 C18 C17 H3 52.8 85.2
H1 C18 C19 O19 153.3 91.4
C19 C18 H1 H2 239.9 239.7
H1 C18 C19 H31 273.9 212.2
C17 C18 H2 C19 119.9 120.5
C17 C18 H2 H1 240.0 240.6
H2 C18 C17 H3 172.8 205.0
H2 C18 C19 O19 33.2 331.1
C19 C18 H2 H1 120.1 120.2
H2 C18 C19 H31 153.8 91.9
H3 C17 C18 C19 292.8 325.3
H3 C17 C18 H1 52.8 85.2
H3 C17 C18 H2 172.8 205.0
O16 C16 H4 C15 147.9 144.7
H4 C16 C17 H3 142.4 146.3
H4 C16 C15 O15 187.7 216.6
H4 C16 C15 C14 307.4 340.5
H4 C16 C15 H5 66.7 98.9
C16 C15 H5 O15 120.3 119.6
C16 C15 H5 C14 240.9 239.8
H5 C15 C16 H4 66.7 98.9
O15 C15 H5 C14 120.6 120.2
H5 C15 O15 H6 300.2 297.9
H5 C15 C14 C13 66.8 186.0
H5 C15 C14 H7 186.9 306.9
H5 C15 C14 H8 306.7 64.6
H6 O15 C15 C14 60.6 56.3
H6 O15 C15 H5 300.2 297.9
C15 C14 H7 C13 239.4 237.0
H7 C14 C15 H5 186.9 306.9
C15 C14 H7 H8 119.7 118.6
H7 C14 C13 C12 359.0 28.9
C13 C14 H7 H8 240.3 241.6
C15 C14 H8 C13 120.6 123.2
H8 C14 C15 H5 306.7 64.6
C15 C14 H8 H7 240.3 241.4
H8 C14 C13 C12 239.2 271.4
C13 C14 H8 H7 119.7 118.1
H10 C29 C13 C12 0.0 180.3
H11 C29 C13 C12 180.0 0.3
C13 C12 H13 C11 236.6 239.0
C13 C12 H13 H14 118.3 118.6
H13 C12 C11 C28 312.9 142.4
C11 C12 H13 H14 241.7 239.6
H13 C12 C11 H15 71.9 262.0
C13 C12 H14 C11 123.4 120.8
C13 C12 H14 H13 241.7 241.4
H14 C12 C11 C28 194.0 22.0
C11 C12 H14 H13 118.3 120.5
H14 C12 C11 H15 313.0 141.6
C12 C11 H15 C28 240.5 239.9
H15 C11 C12 H13 71.9 262.0
H15 C11 C12 H14 313.0 141.6
H15 C11 C28 H16 61.0 299.3
H15 C11 C28 H17 181.0 59.3
H15 C11 C28 H18 301.0 179.4
H16 C28 C11 H15 61.0 299.3
C11 C28 H16 H17 120.0 120.0
C11 C28 H16 H18 240.0 240.0
H17 C28 H16 H18 120.0 120.0
H17 C28 C11 H15 181.0 59.3
C11 C28 H17 H16 240.0 240.0
C11 C28 H17 H18 120.0 120.0
H16 C28 H17 H18 240.0 240.0
H18 C28 C11 H15 301.0 179.4
C11 C28 H18 H16 120.0 120.0
C11 C28 H18 H17 240.0 240.0
H16 C28 H18 H17 120.0 120.0
H19 C10 C11 H15 136.1 100.3
H19 C10 C9 C8 87.7 85.6
C9 C10 H19 H20 240.4 240.2
H19 C10 C9 H21 208.7 204.4
H20 C10 C11 H15 255.9 219.8
H20 C10 C9 C8 327.9 325.9
C9 C10 H20 H19 119.6 120.2
H20 C10 C9 H21 88.9 84.7
O9 C9 H21 C8 118.7 119.0
C10 C9 H21 C8 239.7 240.0
H21 C9 C10 H19 208.7 204.4
H21 C9 C10 H20 88.9 84.7
H21 C9 C8 H22 40.7 278.7
H21 C9 C8 H23 282.3 37.2
C7 C8 H22 H23 117.6 241.4
H22 C8 C9 H21 40.7 278.7
C9 C8 H22 H23 242.4 118.5
C7 C8 H23 H22 242.4 118.6
H23 C8 C9 H21 282.3 37.2
C9 C8 H23 H22 117.6 241.6
H24 C7 C8 H22 287.5 47.4
H24 C7 C8 H23 46.0 288.8
H25 C6 C7 H24 1.7 0.1
H26 C5 C6 H25 282.7 284.6
C3 C4 H27 H28 119.5 239.1
H27 C4 C5 H26 282.7 153.5
C3 C4 H28 H27 240.5 120.0
H28 C4 C5 H26 163.0 272.9
H29 C3 C4 H27 194.2 329.5
H29 C3 C4 H28 313.9 209.5
H30 C2 C1 O1 179.2 183.4
H30 C2 C3 H29 1.2 2.8
C18 C19 H31 O19 240.3 239.4
H31 C19 C18 H1 273.9 212.2
H31 C19 C18 H2 153.8 91.9
O20 C20 H32 C21 120.4 120.1
H32 C20 C19 H31 74.7 55.3
H32 C20 C21 H34 319.3 180.0
H33 O20 C20 C21 60.4 300.1
H33 O20 C20 H32 300.4 180.0
H34 C21 C20 H32 319.3 180.0
H36 C22 C21 H34 178.7 180.0
H36 C22 C23 C24 66.9 305.0
H36 C22 C23 H38 185.9 65.5
C22 C23 H38 C24 240.1 239.4
H38 C23 C22 H36 185.9 65.5
H38 C23 C24 C25 81.0 71.8
H38 C23 C24 H39 201.8 192.0
H38 C23 C24 H40 320.3 311.8
C23 C24 H39 C25 235.5 239.8
H39 C24 C23 H38 201.8 192.0
C23 C24 H39 H40 117.7 119.9
H39 C24 C25 C26 249.6 256.6
H39 C24 C25 C30 67.6 76.6
C25 C24 H39 H40 242.2 240.0
C23 C24 H40 C25 124.4 120.1
H40 C24 C23 H38 320.3 311.8
C23 C24 H40 H39 242.2 240.1
H40 C24 C25 C26 131.0 136.6
H40 C24 C25 C30 309.1 316.6
C25 C24 H40 H39 117.8 120.0
O27 C27 H41 C26 236.1 239.3
O27 C27 H41 H42 118.0 119.6
C26 C27 H41 H42 241.9 240.3
H41 C27 C26 H43 81.5 75.4
O27 C27 H42 C26 123.9 120.8
O27 C27 H42 H41 242.0 240.4
C26 C27 H42 H41 118.1 119.7
H42 C27 C26 H43 322.8 315.8
H43 C26 C27 H41 81.5 75.4
H43 C26 C27 H42 322.8 315.8
C25 C30 H44 H45 120.0 120.0
C25 C30 H44 H46 240.0 240.0
H45 C30 H44 H46 120.0 120.0
C25 C30 H45 H44 240.0 240.0
C25 C30 H45 H46 120.0 120.0
H44 C30 H45 H46 240.0 240.0
C25 C30 H46 H44 120.0 120.0
C25 C30 H46 H45 240.0 240.0
H44 C30 H46 H45 120.0 120.0