PDB Chemical Component LKA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LKA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C5	S5	1.821	1.815
C5	C4	1.657	1.529
C5	C6	1.226	1.530
C5	H5	1.115	1.090
S5	C1	1.826	1.815
C1	N1	1.259	1.470
C1	C2	1.628	1.529
C1	H1	1.114	1.090
N1	HN11	1.020	1.009
N1	HN12	1.020	1.009
C2	O2	1.238	1.429
C2	C3	1.654	1.527
C2	H2	1.115	1.090
O2	HO2	0.950	0.967
C3	O3	1.494	1.428
C3	C4	1.410	1.527
C3	H3	1.115	1.090
O3	HO3	0.950	0.967
C4	O4	1.439	1.429
C4	H4	1.115	1.090
O4	HO4	0.949	0.967
C6	O6	1.322	1.429
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O6	HO6	0.950	0.967

Bond Angles for LKA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
S5	C5	C4	106.6	109.3
S5	C5	C6	101.2	109.5
S5	C5	H5	120.4	109.5
C5	S5	C1	106.6	99.6
C4	C5	C6	119.4	109.5
C4	C5	H5	102.6	109.6
C5	C4	C3	120.8	110.0
C5	C4	O4	98.4	109.4
C5	C4	H4	113.7	109.4
C6	C5	H5	107.8	109.5
C5	C6	O6	125.8	109.5
C5	C6	H61	106.5	109.5
C5	C6	H62	106.5	109.5
S5	C1	N1	116.0	109.5
S5	C1	C2	111.3	109.3
S5	C1	H1	102.3	109.5
N1	C1	C2	105.5	109.5
N1	C1	H1	108.5	109.5
C1	N1	HN11	109.8	106.7
C1	N1	HN12	116.0	106.7
C2	C1	H1	113.4	109.5
C1	C2	O2	120.4	109.2
C1	C2	C3	107.3	110.0
C1	C2	H2	105.6	109.5
HN11	N1	HN12	109.8	106.8
O2	C2	C3	115.1	109.4
O2	C2	H2	95.4	109.4
C2	O2	HO2	120.3	106.8
C3	C2	H2	112.1	109.4
C2	C3	O3	105.7	109.2
C2	C3	C4	118.8	110.5
C2	C3	H3	104.9	109.2
O3	C3	C4	106.4	109.3
O3	C3	H3	117.6	109.3
C3	O3	HO3	105.7	106.8
C4	C3	H3	104.2	109.3
C3	C4	O4	118.7	109.3
C3	C4	H4	90.4	109.4
O4	C4	H4	116.1	109.4
C4	O4	HO4	98.4	106.8
O6	C6	H61	106.5	109.4
O6	C6	H62	106.4	109.4
C6	O6	HO6	125.8	106.8
H61	C6	H62	103.1	109.5

Torsion Angles for LKA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C5	S5	C6	234.5	240.1
C4	C5	S5	H5	116.0	120.0
S5	C5	C4	C3	312.9	295.2
S5	C5	C4	O4	182.1	175.2
S5	C5	C4	H4	58.7	55.4
C6	C5	S5	H5	241.5	239.9
S5	C5	C6	O6	62.2	295.0
S5	C5	C6	H61	296.9	55.0
S5	C5	C6	H62	187.4	175.0
C5	S5	C1	N1	179.2	63.8
C5	S5	C1	C2	58.5	303.8
C5	S5	C1	H1	297.0	183.9
S5	C5	C4	C6	113.6	120.0
S5	C5	C4	H5	232.6	240.0
C4	C5	S5	C1	350.5	56.2
C6	C5	C4	H5	119.0	120.1
C4	C5	C6	O6	178.6	54.8
C4	C5	C6	H61	53.3	174.8
C4	C5	C6	H62	303.8	294.8
C2	C3	C4	C5	57.0	68.7
O3	C3	C4	C5	175.9	188.9
C5	C4	C3	H3	300.8	308.5
C3	C4	C5	O4	130.8	120.0
C3	C4	C5	H4	254.2	239.8
O4	C4	C5	H4	123.4	119.8
C5	C4	O4	HO4	180.0	180.0
S5	C5	C6	C4	243.6	240.2
S5	C5	C6	H5	127.2	120.1
C6	C5	S5	C1	116.0	176.1
C4	C5	C6	H5	243.7	239.9
C6	C5	C4	C3	199.3	175.3
C6	C5	C4	O4	68.5	55.3
C6	C5	C4	H4	305.1	295.4
O6	C6	C5	H61	125.3	240.1
O6	C6	C5	H62	234.8	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	109.5	239.9
S5	C5	H5	C4	118.0	119.8
S5	C5	H5	C6	244.9	239.9
H5	C5	S5	C1	234.5	296.2
C4	C5	H5	C6	126.9	120.1
H5	C5	C4	C3	80.3	55.2
H5	C5	C4	O4	309.5	295.2
H5	C5	C4	H4	186.1	175.3
H5	C5	C6	O6	294.9	175.0
H5	C5	C6	H61	169.7	294.9
H5	C5	C6	H62	60.2	54.9
C1	S5	C5	C4	350.5	56.2
C1	S5	C5	C6	116.0	176.1
C1	S5	C5	H5	234.5	296.2
N1	C1	S5	C2	120.7	120.0
N1	C1	S5	H1	242.1	240.0
S5	C1	N1	HN11	54.7	60.0
S5	C1	N1	HN12	180.0	173.9
C2	C1	S5	H1	121.5	120.0
S5	C1	C2	O2	170.9	304.7
S5	C1	C2	C3	305.1	64.7
S5	C1	C2	H2	64.8	184.9
S5	C1	N1	C2	236.3	240.1
S5	C1	N1	H1	114.4	120.1
C2	C1	N1	H1	238.1	240.0
N1	C1	C2	O2	44.2	184.7
N1	C1	C2	C3	178.5	304.7
N1	C1	C2	H2	298.2	64.9
HN11	N1	C1	HN12	234.7	246.2
S5	C1	C2	N1	126.6	120.0
S5	C1	C2	H1	245.2	240.0
N1	C1	C2	H1	118.6	120.0
C2	C1	N1	HN11	178.4	179.9
C2	C1	N1	HN12	303.7	293.8
O2	C2	C1	C3	225.8	240.0
O2	C2	C1	H2	106.1	119.8
C1	C2	O2	HO2	180.0	300.4
C3	C2	C1	H2	240.3	239.8
C1	C2	C3	O3	241.0	171.1
C1	C2	C3	C4	0.3	291.4
C1	C2	C3	H3	116.1	51.6
S5	C1	H1	N1	236.9	239.9
S5	C1	H1	C2	120.0	119.9
N1	C1	H1	C2	243.1	240.0
H1	C1	N1	HN11	300.3	300.0
H1	C1	N1	HN12	65.6	53.8
H1	C1	C2	O2	285.6	64.7
H1	C1	C2	C3	59.9	184.7
H1	C1	C2	H2	179.6	304.9
HN11	N1	C1	C2	178.4	179.9
HN11	N1	C1	H1	300.3	300.0
C1	N1	HN11	HN12	128.7	113.8
HN12	N1	C1	C2	303.7	293.8
HN12	N1	C1	H1	65.6	53.8
C1	N1	HN12	HN11	234.7	246.2
O2	C2	C1	H1	285.6	64.7
C1	C2	O2	C3	130.9	120.4
C1	C2	O2	H2	248.4	240.2
C3	C2	O2	H2	117.5	119.8
O2	C2	C3	O3	17.9	291.1
O2	C2	C3	C4	137.2	51.3
O2	C2	C3	H3	253.0	171.5
C5	C4	C3	C2	57.0	68.7
C3	C2	C1	H1	59.9	184.7
C1	C2	C3	O2	223.1	240.0
C1	C2	C3	H2	115.4	120.3
O2	C2	C3	H2	252.4	240.2
C3	C2	O2	HO2	49.1	180.0
O3	C3	C2	C4	240.7	239.8
O3	C3	C2	H3	124.9	119.5
C2	C3	O3	HO3	180.0	301.0
C4	C3	C2	H3	244.2	239.8
C2	C3	C4	O4	178.3	188.8
C2	C3	C4	H4	298.7	308.6
H2	C2	C1	H1	179.6	304.9
C1	C2	H2	O2	123.6	119.7
C1	C2	H2	C3	243.5	239.4
O2	C2	H2	C3	119.9	119.7
H2	C2	O2	HO2	291.6	60.2
H2	C2	C3	O3	125.6	50.8
H2	C2	C3	C4	244.8	171.1
H2	C2	C3	H3	0.6	291.3
HO2	O2	C2	C3	49.1	180.0
HO2	O2	C2	H2	291.6	60.2
C5	C4	C3	O3	175.9	188.9
O3	C3	C2	H2	125.6	50.8
C2	C3	O3	C4	127.2	121.0
C2	C3	O3	H3	243.4	240.5
C4	C3	O3	H3	116.2	119.5
O3	C3	C4	O4	297.3	309.0
O3	C3	C4	H4	57.6	68.8
C3	C4	C5	C6	199.3	175.3
C3	C4	C5	H5	80.3	55.2
C5	C4	C3	O4	238.7	239.9
C5	C4	C3	H4	118.3	120.2
C4	C3	C2	H2	244.8	171.1
C2	C3	C4	O3	241.1	239.8
C2	C3	C4	H3	116.2	120.2
O3	C3	C4	H3	235.1	240.4
C4	C3	O3	HO3	52.8	180.0
O4	C4	C3	H4	239.6	240.2
C3	C4	O4	HO4	47.8	59.5
H3	C3	C2	H2	0.6	291.3
C2	C3	H3	O3	117.1	119.5
C2	C3	H3	C4	234.5	239.0
O3	C3	H3	C4	117.4	119.5
H3	C3	O3	HO3	296.6	60.5
H3	C3	C4	O4	62.1	68.6
H3	C3	C4	H4	182.5	188.4
HO3	O3	C3	C4	52.8	180.0
HO3	O3	C3	H3	296.6	60.5
O4	C4	C5	C6	68.5	55.3
O4	C4	C5	H5	309.5	295.2
C5	C4	O4	C3	132.2	120.5
C5	C4	O4	H4	238.3	240.2
O4	C4	C3	H3	62.1	68.6
C3	C4	O4	H4	106.2	119.7
H4	C4	C5	C6	305.1	295.4
H4	C4	C5	H5	186.1	175.3
C5	C4	H4	C3	235.7	239.5
C5	C4	H4	O4	113.1	119.8
H4	C4	C3	H3	182.5	188.4
C3	C4	H4	O4	237.4	240.3
H4	C4	O4	HO4	301.7	299.8
HO4	O4	C4	H4	301.7	299.8
O6	C6	C5	H5	294.9	175.0
C5	C6	O6	H61	234.7	120.0
C5	C6	O6	H62	125.2	239.9
H61	C6	O6	H62	250.5	119.9
H61	C6	C5	H5	169.7	294.9
C5	C6	H61	O6	136.3	240.0
C5	C6	H61	H62	248.1	120.1
O6	C6	H61	H62	111.8	240.1
H61	C6	O6	HO6	305.2	60.0
H62	C6	C5	H5	60.2	54.9
C5	C6	H62	O6	223.7	120.1
C5	C6	H62	H61	111.9	239.9
O6	C6	H62	H61	248.2	119.9
H62	C6	O6	HO6	54.7	300.1
HO6	O6	C6	H61	305.2	60.0
HO6	O6	C6	H62	54.7	300.1