PDB Chemical Component LK3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LK3

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O27 S11 1.501 1.450
S11 N 1.631 1.709
N CA 1.471 1.462
CA C 1.533 1.518
C OXT 1.250 1.360
C O 1.249 1.224
CA CB 1.531 1.538
CB CG 1.530 1.531
CG CD 1.530 1.509
CD OE2 1.250 1.224
CD OE1 1.250 1.356
S11 C12 1.752 1.767
C12 C17 1.390 1.381
C17 C16 1.390 1.394
C16 C15 1.391 1.405
C15 C21 1.390 1.404
C21 C20 1.391 1.395
C20 C19 1.392 1.392
C19 C18 1.391 1.395
C15 C14 1.391 1.416
C18 C14 1.391 1.404
C12 C13 1.391 1.385
C14 C13 1.392 1.404
C20 O22 1.361 1.361
O22 C23 1.436 1.427
S11 O28 1.499 1.451
C23 C24 1.529 1.522
C24 C25 1.530 1.527
C25 C26 1.530 1.529
C26 C30 1.529 1.520
N H 1.000 1.030
CB HBC1 1.100 1.097
CB HBC2 1.100 1.097
OXT HXT 0.950 0.981
CG HGC1 1.100 1.096
CG HGC2 1.100 1.097
OE1 HE1 0.950 0.981
C17 H17 1.080 1.087
C13 H13 1.080 1.089
C16 H16 1.080 1.088
C21 H21 1.080 1.089
C19 H19 1.080 1.086
C18 H18 1.080 1.088
C23 H231 1.100 1.094
C23 H232 1.100 1.095
C24 H241 1.099 1.098
C24 H242 1.100 1.097
C25 H251 1.100 1.097
C25 H252 1.100 1.097
C26 H261 1.099 1.096
C26 H262 1.100 1.096
C30 H301 1.100 1.095
C30 H302 1.100 1.095
C30 H303 1.100 1.094
CA HA 1.100 1.097

Bond Angles for LK3

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O27 S11 N 108.9 109.4
O27 S11 C12 110.0 106.9
S11 N CA 111.7 120.5
N S11 C12 109.9 101.6
S11 N H 108.8 118.2
N CA C 109.9 108.1
N CA CB 108.4 112.1
CA N H 108.7 116.4
N CA HA 110.0 107.2
CA C OXT 117.3 111.9
CA C O 117.2 125.5
C CA CB 110.0 112.2
C CA HA 108.5 107.7
OXT C O 125.5 122.6
C OXT HXT 109.5 115.3
CA CB CG 112.3 116.2
CA CB HBC1 108.5 108.8
CA CB HBC2 107.9 108.3
CB CA HA 110.0 109.3
CB CG CD 111.2 113.9
CG CB HBC1 108.6 109.8
CG CB HBC2 107.9 107.3
CB CG HGC1 108.9 111.3
CB CG HGC2 108.6 109.8
CG CD OE2 117.2 123.9
CG CD OE1 117.1 112.7
CD CG HGC1 108.9 108.5
CD CG HGC2 108.5 107.3
OE2 CD OE1 125.7 123.4
CD OE1 HE1 109.5 115.1
S11 C12 C17 119.3 119.2
S11 C12 C13 121.0 119.3
C12 C17 C16 120.3 119.3
C17 C12 C13 119.7 121.5
C12 C17 H17 119.8 121.4
C17 C16 C15 119.9 120.7
C16 C17 H17 119.8 119.3
C17 C16 H16 120.0 118.9
C16 C15 C21 119.9 121.5
C16 C15 C14 119.9 119.3
C15 C16 H16 120.0 120.5
C15 C21 C20 120.2 120.7
C21 C15 C14 120.2 119.3
C15 C21 H21 119.9 120.2
C21 C20 C19 119.5 120.0
C21 C20 O22 120.6 120.0
C20 C21 H21 119.9 119.1
C20 C19 C18 120.2 120.0
C19 C20 O22 119.8 120.0
C20 C19 H19 119.9 120.3
C19 C18 C14 120.2 120.7
C18 C19 H19 119.9 119.7
C19 C18 H18 119.9 118.8
C15 C14 C18 119.6 119.3
C15 C14 C13 120.0 119.3
C18 C14 C13 120.4 121.5
C14 C18 H18 119.9 120.5
C12 C13 C14 120.1 120.0
C12 C13 H13 119.9 120.2
C14 C13 H13 120.0 119.8
C20 O22 C23 111.9 117.0
O22 C23 C24 110.6 108.8
O22 C23 H231 109.1 108.6
O22 C23 H232 108.8 108.5
C23 C24 C25 110.8 111.7
C24 C23 H231 109.1 111.0
C24 C23 H232 108.9 110.9
C23 C24 H241 109.0 109.3
C23 C24 H242 108.7 109.4
C24 C25 C26 110.9 111.3
C25 C24 H241 109.0 110.2
C25 C24 H242 108.7 110.3
C24 C25 H251 109.0 109.6
C24 C25 H252 108.6 109.5
C25 C26 C30 110.9 111.5
C26 C25 H251 109.0 109.6
C26 C25 H252 108.7 109.6
C25 C26 H261 109.0 109.9
C25 C26 H262 108.7 109.9
C30 C26 H261 109.0 109.2
C30 C26 H262 108.7 109.1
C26 C30 H301 109.5 111.0
C26 C30 H302 109.4 111.0
C26 C30 H303 109.4 110.3
HBC1 CB HBC2 111.7 106.0
HGC1 CG HGC2 110.8 105.6
H231 C23 H232 110.3 109.0
H241 C24 H242 110.5 105.8
H251 C25 H252 110.6 107.2
H261 C26 H262 110.6 107.2
H301 C30 H302 109.5 108.3
H301 C30 H303 109.5 108.1
H302 C30 H303 109.5 108.1

Torsion Angles for LK3

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O27 S11 N CA 199.8 22.9
N S11 O27 C12 239.6 250.7
O27 S11 N H 319.8 228.6
O27 S11 C12 C17 153.0 155.3
O27 S11 C12 C13 332.2 335.3
O27 S11 N C12 120.4 112.8
S11 N CA C 78.4 145.9
S11 N CA CB 198.6 270.1
CA N S11 H 240.0 154.2
S11 N CA HA 318.9 30.0
N S11 C12 C17 272.8 270.0
N S11 C12 C13 92.0 90.0
CA N S11 C12 79.4 270.0
S11 N CA H 120.0 205.4
N CA C OXT 214.3 184.6
N CA C O 34.0 4.5
C CA N CB 239.7 235.8
C CA N HA 119.4 115.9
N CA CB CG 177.8 302.6
N CA CB HBC1 297.8 178.2
N CA CB HBC2 59.0 63.4
CB CA N HA 239.7 240.1
N CA C CB 119.3 124.1
C CA N H 318.3 300.5
N CA C HA 239.6 244.5
OXT C CA O 180.3 180.1
CA C OXT HXT 179.7 179.9
C CA CB CG 298.1 64.5
C CA CB HBC1 58.1 300.0
C CA CB HBC2 179.3 185.3
CB CA C HA 120.3 120.3
CA C OXT O 179.7 179.9
OXT C CA CB 95.0 60.4
OXT C CA HA 334.7 300.1
CA C O OXT 180.3 180.1
O C CA CB 274.7 240.3
O C CA HA 154.4 120.0
O C OXT HXT 0.0 360.0
N CA CB C 239.8 238.1
CB CA N H 78.6 64.7
N CA CB HA 120.4 118.7
CB CA C OXT 95.0 60.4
CB CA C O 274.7 240.3
C CA CB HA 240.6 240.6
CA CB CG CD 186.5 176.0
CG CB CA HBC1 240.0 124.5
CG CB CA HBC2 118.8 239.2
CA CB CG HGC1 306.5 299.0
CA CB CG HGC2 67.2 55.6
HBC1 CB CA HBC2 238.8 114.7
CA CB CG HBC1 120.0 236.0
CA CB CG HBC2 241.2 121.3
CG CB CA HA 57.5 183.9
CB CG CD OE2 9.0 4.5
CB CG CD OE1 188.6 184.0
CD CG CB HGC1 240.0 236.9
CD CG CB HGC2 119.3 120.4
HBC1 CB CG HBC2 121.2 245.3
HGC1 CG CB HGC2 239.3 243.4
CD CG CB HBC1 66.5 300.0
CD CG CB HBC2 305.3 54.7
CB CG CD HGC1 120.0 124.6
CB CG CD HGC2 240.7 238.3
OE2 CD CG OE1 180.5 180.6
CG CD OE1 HE1 180.6 180.6
HGC1 CG CD HGC2 120.7 113.7
CG CD OE2 OE1 179.5 179.4
OE2 CD CG HGC1 249.0 240.0
OE2 CD CG HGC2 128.3 126.3
OE2 CD OE1 HE1 0.0 0.1
CG CD OE1 OE2 180.5 180.6
OE1 CD CG HGC1 68.6 59.4
OE1 CD CG HGC2 307.9 305.7
O27 S11 C12 N 240.2 245.3
C12 S11 N CA 79.4 270.0
C12 S11 N H 199.4 115.8
S11 C12 C17 C16 179.0 180.0
C17 C12 S11 C13 180.8 180.0
S11 C12 C17 H17 359.0 0.0
S11 C12 C13 C14 180.9 180.0
S11 C12 C13 H13 0.9 0.0
S11 C12 C17 C13 179.2 180.0
C12 C17 C16 C15 0.0 0.0
C16 C17 C12 H17 180.0 180.0
C12 C17 C16 H16 180.0 180.0
C17 C12 C13 C14 0.1 0.0
C17 C12 C13 H13 180.1 180.0
C16 C17 C12 C13 359.8 360.0
C12 C17 C16 H17 180.0 180.0
C17 C16 C15 C21 181.3 180.0
C17 C16 C15 C14 0.3 0.0
C15 C16 C17 H16 180.0 180.0
C15 C16 C17 H17 180.0 180.0
C17 C16 C15 H16 180.0 180.0
C16 C15 C21 C20 179.0 180.0
C21 C15 C16 C14 181.0 180.0
C16 C15 C21 H21 358.9 360.0
C16 C15 C14 C18 180.4 180.0
C16 C15 C14 C13 359.5 360.0
C16 C15 C21 C14 179.0 180.0
C21 C15 C16 H16 1.3 360.0
C15 C21 C20 C19 0.8 360.0
C15 C21 C20 O22 184.9 180.0
C20 C21 C15 H21 180.0 180.1
C21 C15 C14 C18 359.4 0.0
C21 C15 C14 C13 178.5 180.0
C20 C21 C15 C14 359.9 0.0
C15 C21 C20 H21 180.0 179.9
C21 C20 C19 C18 359.1 0.0
C19 C20 C21 O22 175.9 179.9
C21 C20 C19 H19 179.1 180.1
C21 C20 O22 C23 330.3 149.9
C21 C20 C19 O22 184.1 180.1
C19 C20 C21 H21 180.8 180.0
C20 C19 C18 C14 0.3 0.0
C18 C19 C20 H19 180.0 179.9
C20 C19 C18 H18 180.3 180.0
C19 C20 O22 C23 154.4 330.0
C18 C19 C20 O22 175.0 179.9
C20 C19 C18 H19 180.0 180.1
C15 C14 C18 C19 0.5 360.0
C19 C18 C14 C13 181.4 180.0
C14 C18 C19 H18 180.0 180.0
C16 C15 C14 C21 181.0 180.0
C14 C15 C16 H16 180.4 180.0
C14 C15 C21 C20 359.9 0.0
C14 C15 C21 H21 179.9 180.0
C19 C18 C14 C15 0.5 360.0
C18 C14 C15 C13 180.9 180.0
C15 C14 C18 H18 180.4 180.0
C12 C13 C14 C15 0.3 0.0
C15 C14 C13 H13 180.3 180.0
C14 C18 C19 H19 180.3 180.0
C19 C18 C14 H18 180.0 180.0
C15 C14 C18 C13 179.1 180.0
C12 C13 C14 C18 179.4 180.0
C18 C14 C13 H13 359.4 360.0
S11 C12 C13 C17 180.8 180.0
C13 C12 C17 C16 359.8 360.0
C13 C12 C17 H17 179.8 180.0
C15 C14 C13 C12 0.3 0.0
C18 C14 C13 C12 179.4 180.0
C14 C13 C12 H13 180.0 180.0
C15 C14 C13 C18 180.9 180.0
C13 C14 C18 H18 1.3 0.0
C12 C13 C14 H13 180.0 180.0
C21 C20 O22 C19 175.9 179.9
O22 C20 C21 H21 4.9 0.1
O22 C20 C19 C18 175.0 179.9
O22 C20 C19 H19 355.0 360.0
C20 O22 C23 C24 269.7 209.2
C20 O22 C23 H231 29.7 330.0
C20 O22 C23 H232 150.1 88.3
O22 C23 C24 C25 296.9 179.4
C24 C23 O22 H231 240.0 239.1
C24 C23 O22 H232 119.5 120.8
O22 C23 C24 H241 56.9 301.6
O22 C23 C24 H242 177.5 57.1
H231 C23 O22 H232 239.5 241.7
O22 C23 C24 H231 120.0 119.4
O22 C23 C24 H232 240.5 240.6
C23 C24 C25 C26 180.2 181.7
C25 C24 C23 H241 240.0 237.8
C25 C24 C23 H242 119.4 122.3
C23 C24 C25 H251 300.2 60.3
C23 C24 C25 H252 60.8 303.0
H231 C23 C24 H232 120.5 121.3
H241 C24 C23 H242 239.5 244.6
C25 C24 C23 H231 176.9 60.0
C25 C24 C23 H232 56.4 298.8
C23 C24 C25 H241 120.0 121.7
C23 C24 C25 H242 240.5 238.2
C24 C25 C26 C30 180.1 178.6
C26 C25 C24 H251 240.0 121.4
C26 C25 C24 H252 119.4 238.7
C24 C25 C26 H261 300.1 299.8
C24 C25 C26 H262 60.7 57.5
H241 C24 C25 H242 120.5 116.5
H251 C25 C24 H252 239.4 117.3
C26 C25 C24 H241 60.2 60.0
C26 C25 C24 H242 299.7 303.5
C24 C25 C26 H251 120.0 238.6
C24 C25 C26 H252 240.6 121.3
C30 C26 C25 H261 240.0 238.8
C30 C26 C25 H262 119.4 121.1
C25 C26 C30 H301 60.0 299.9
C25 C26 C30 H302 180.0 60.4
C25 C26 C30 H303 300.0 180.1
H251 C25 C26 H252 120.6 242.7
H261 C26 C25 H262 239.4 242.3
C30 C26 C25 H251 60.1 300.0
C30 C26 C25 H252 299.5 57.3
C25 C26 C30 H261 120.0 121.6
C25 C26 C30 H262 240.6 238.5
H261 C26 C30 H262 120.6 116.8
H301 C30 C26 H302 240.0 239.5
H301 C30 C26 H303 120.0 119.8
H302 C30 C26 H303 240.0 240.3
S11 N H CA 238.1 155.3
H N S11 C12 199.4 115.8
H N CA C 318.3 300.5
H N CA CB 78.6 64.7
H N CA HA 198.9 184.6
CA CB HBC1 CG 237.7 128.2
CA CB HBC1 HBC2 118.8 243.8
HBC1 CB CA HA 177.5 59.5
HBC1 CB CG CD 66.5 300.0
CG CB HBC1 HBC2 241.1 115.6
HBC1 CB CG HGC1 186.5 63.0
HBC1 CB CG HGC2 307.2 179.6
CA CB HBC2 CG 121.5 233.9
CA CB HBC2 HBC1 240.8 116.6
HBC2 CB CA HA 298.7 304.7
HBC2 CB CG CD 305.3 54.7
CG CB HBC2 HBC1 119.2 242.8
HBC2 CB CG HGC1 65.3 177.7
HBC2 CB CG HGC2 186.1 294.3
HXT OXT C O 0.0 360.0
CB CG HGC1 CD 238.6 233.9
HGC1 CG CB HBC1 186.5 63.0
HGC1 CG CB HBC2 65.3 177.7
CB CG HGC1 HGC2 119.3 119.1
HGC1 CG CD OE2 249.0 240.0
HGC1 CG CD OE1 68.6 59.4
CD CG HGC1 HGC2 240.7 245.2
CB CG HGC2 CD 120.9 124.3
HGC2 CG CB HBC1 307.2 179.6
HGC2 CG CB HBC2 186.1 294.3
CB CG HGC2 HGC1 240.5 239.9
HGC2 CG CD OE2 128.3 126.3
HGC2 CG CD OE1 307.9 305.7
CD CG HGC2 HGC1 119.5 115.6
C12 C17 H17 C16 180.0 180.0
H17 C17 C12 C13 179.8 180.0
H17 C17 C16 C15 180.0 180.0
H17 C17 C16 H16 360.0 360.0
C12 C13 H13 C14 180.0 180.0
C17 C16 H16 C15 180.0 180.0
H16 C16 C17 H17 360.0 360.0
H16 C16 C15 C21 1.3 360.0
H16 C16 C15 C14 180.4 180.0
C15 C21 H21 C20 180.0 180.1
H21 C21 C15 C14 179.9 180.0
H21 C21 C20 C19 180.8 180.0
H21 C21 C20 O22 4.9 0.1
C20 C19 H19 C18 180.0 179.9
H19 C19 C20 O22 355.0 360.0
H19 C19 C18 C14 180.3 180.0
H19 C19 C18 H18 0.3 359.9
C19 C18 H18 C14 180.0 180.0
H18 C18 C19 H19 0.3 359.9
H18 C18 C14 C13 1.3 0.0
O22 C23 H231 C24 239.1 240.4
O22 C23 H231 H232 119.5 118.0
H231 C23 C24 C25 176.9 60.0
C24 C23 H231 H232 240.4 237.6
H231 C23 C24 H241 296.9 182.2
H231 C23 C24 H242 57.5 297.7
O22 C23 H232 C24 120.6 119.5
O22 C23 H232 H231 240.3 241.9
H232 C23 C24 C25 56.4 298.8
C24 C23 H232 H231 119.7 122.4
H232 C23 C24 H241 176.5 61.0
H232 C23 C24 H242 297.0 176.4
C23 C24 H241 C25 238.9 236.9
H241 C24 C23 H231 296.9 182.2
H241 C24 C23 H232 176.5 61.0
C23 C24 H241 H242 119.5 117.7
H241 C24 C25 C26 60.2 60.0
C25 C24 H241 H242 240.6 240.8
H241 C24 C25 H251 180.2 298.6
H241 C24 C25 H252 300.8 181.3
C23 C24 H242 C25 120.7 123.2
H242 C24 C23 H231 57.5 297.7
H242 C24 C23 H232 297.0 176.4
C23 C24 H242 H241 240.4 242.4
H242 C24 C25 C26 299.7 303.5
C25 C24 H242 H241 119.6 119.2
H242 C24 C25 H251 59.7 182.1
H242 C24 C25 H252 180.3 64.8
C24 C25 H251 C26 238.8 122.4
H251 C25 C24 H241 180.2 298.6
H251 C25 C24 H242 59.7 182.1
C24 C25 H251 H252 119.4 241.2
H251 C25 C26 C30 60.1 300.0
C26 C25 H251 H252 240.6 118.8
H251 C25 C26 H261 180.1 61.2
H251 C25 C26 H262 300.7 178.9
C24 C25 H252 C26 120.8 237.6
H252 C25 C24 H241 300.8 181.3
H252 C25 C24 H242 180.3 64.8
C24 C25 H252 H251 240.4 118.8
H252 C25 C26 C30 299.5 57.3
C26 C25 H252 H251 119.6 241.2
H252 C25 C26 H261 59.5 178.5
H252 C25 C26 H262 180.1 296.2
C25 C26 H261 C30 238.8 237.4
H261 C26 C25 H251 180.1 61.2
H261 C26 C25 H252 59.5 178.5
C25 C26 H261 H262 119.4 119.4
C30 C26 H261 H262 240.6 241.9
H261 C26 C30 H301 300.0 178.2
H261 C26 C30 H302 60.0 298.8
H261 C26 C30 H303 180.0 58.5
C25 C26 H262 C30 120.8 122.5
H262 C26 C25 H251 300.7 178.9
H262 C26 C25 H252 180.1 296.2
C25 C26 H262 H261 240.4 240.6
C30 C26 H262 H261 119.6 118.1
H262 C26 C30 H301 179.4 61.4
H262 C26 C30 H302 299.4 181.9
H262 C26 C30 H303 59.4 301.6
H301 C30 C26 H261 300.0 178.2
H301 C30 C26 H262 179.4 61.4
C26 C30 H301 H302 120.0 122.1
C26 C30 H301 H303 240.0 239.0
H302 C30 H301 H303 120.1 116.9
H302 C30 C26 H261 60.0 298.8
H302 C30 C26 H262 299.4 181.9
C26 C30 H302 H301 240.0 237.9
C26 C30 H302 H303 119.9 121.0
H301 C30 H302 H303 239.9 243.1
H303 C30 C26 H261 180.0 58.5
H303 C30 C26 H262 59.4 301.6
C26 C30 H303 H301 120.0 121.5
C26 C30 H303 H302 240.1 238.5
H301 C30 H303 H302 120.0 117.0
N CA HA C 120.3 116.1
N CA HA CB 240.6 238.3
HA CA N H 198.9 184.6
HA CA C OXT 334.7 300.1
HA CA C O 154.4 120.0
C CA HA CB 120.3 122.2
HA CA CB CG 57.5 183.9
HA CA CB HBC1 177.5 59.5
HA CA CB HBC2 298.7 304.7