PDB Chemical Component LK1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LK1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O28 S11 1.417 1.450
S11 O27 1.409 1.451
S11 N 1.597 1.709
S11 C12 1.579 1.768
N CA 1.452 1.462
N H 1.020 1.031
CA C 1.520 1.518
CA CB 1.526 1.538
CA HA 1.115 1.096
C OXT 1.227 1.360
C O 1.225 1.225
OXT HXT 0.950 0.981
CB CG 1.506 1.531
CB HBC1 1.115 1.098
CB HBC2 1.115 1.097
CG CD 1.496 1.508
CG HGC1 1.115 1.096
CG HGC2 1.115 1.097
CD OE2 1.238 1.356
CD OE1 1.231 1.225
OE2 HE2 0.951 0.981
C12 C17 1.375 1.381
C12 C13 1.397 1.385
C17 C16 1.375 1.395
C17 H17 1.103 1.087
C16 C15 1.379 1.404
C16 H16 1.103 1.088
C15 C21 1.370 1.405
C15 C14 1.387 1.415
C21 C20 1.368 1.395
C21 H21 1.103 1.089
C20 C19 1.392 1.392
C20 O22 1.360 1.361
C19 C18 1.389 1.395
C19 H19 1.103 1.087
C18 C14 1.397 1.404
C18 H18 1.103 1.088
C14 C13 1.407 1.404
C13 H13 1.103 1.089
O22 C23 1.420 1.427
C23 C24 1.511 1.523
C23 H231 1.115 1.095
C23 H232 1.115 1.095
C24 C25 1.518 1.526
C24 H241 1.115 1.096
C24 H242 1.115 1.097
C25 C26 1.506 1.521
C25 H251 1.115 1.096
C25 H252 1.115 1.096
C26 H261 1.115 1.094
C26 H262 1.115 1.094
C26 H263 1.115 1.094

Bond Angles for LK1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O28 S11 O27 111.2 120.3
O28 S11 N 112.4 109.0
O28 S11 C12 112.5 108.0
O27 S11 N 107.2 109.4
O27 S11 C12 110.1 106.9
N S11 C12 103.2 101.6
S11 N CA 130.6 120.4
S11 N H 104.9 118.1
S11 C12 C17 115.4 119.2
S11 C12 C13 125.2 119.2
CA N H 104.9 116.5
N CA C 117.0 108.1
N CA CB 104.7 112.2
N CA HA 107.9 107.2
C CA CB 110.0 112.1
C CA HA 102.4 107.8
CA C OXT 113.3 111.9
CA C O 120.4 125.5
CB CA HA 115.2 109.3
CA CB CG 110.7 116.2
CA CB HBC1 111.8 108.8
CA CB HBC2 111.8 108.3
OXT C O 126.1 122.5
C OXT HXT 113.4 115.3
CG CB HBC1 111.8 109.8
CG CB HBC2 111.7 107.3
CB CG CD 109.5 114.0
CB CG HGC1 112.2 111.3
CB CG HGC2 112.2 109.8
HBC1 CB HBC2 98.6 105.9
CD CG HGC1 112.2 108.4
CD CG HGC2 112.2 107.4
CG CD OE2 117.9 112.8
CG CD OE1 117.2 123.9
HGC1 CG HGC2 98.2 105.6
OE2 CD OE1 124.8 123.3
CD OE2 HE2 117.9 115.1
C17 C12 C13 119.4 121.5
C12 C17 C16 122.2 119.3
C12 C17 H17 118.9 121.4
C12 C13 C14 119.0 119.9
C12 C13 H13 120.2 120.2
C16 C17 H17 118.9 119.3
C17 C16 C15 118.9 120.6
C17 C16 H16 120.4 118.8
C15 C16 H16 120.7 120.5
C16 C15 C21 117.8 121.4
C16 C15 C14 120.8 119.3
C21 C15 C14 121.4 119.3
C15 C21 C20 120.3 120.7
C15 C21 H21 119.9 120.1
C15 C14 C18 118.2 119.3
C15 C14 C13 119.8 119.3
C20 C21 H21 119.8 119.2
C21 C20 C19 120.1 120.1
C21 C20 O22 118.7 120.0
C19 C20 O22 121.2 119.9
C20 C19 C18 119.5 120.0
C20 C19 H19 120.4 120.4
C20 O22 C23 116.3 117.1
C18 C19 H19 120.2 119.6
C19 C18 C14 120.5 120.7
C19 C18 H18 119.5 118.8
C14 C18 H18 120.0 120.5
C18 C14 C13 122.0 121.4
C14 C13 H13 120.8 119.9
O22 C23 C24 112.1 108.8
O22 C23 H231 111.2 108.6
O22 C23 H232 111.3 108.5
C24 C23 H231 111.2 110.9
C24 C23 H232 111.2 110.9
C23 C24 C25 108.7 111.6
C23 C24 H241 112.5 109.3
C23 C24 H242 112.5 109.3
H231 C23 H232 99.1 109.0
C25 C24 H241 112.5 110.3
C25 C24 H242 112.5 110.2
C24 C25 C26 112.8 111.4
C24 C25 H251 110.9 109.9
C24 C25 H252 111.0 109.9
H241 C24 H242 98.0 105.9
C26 C25 H251 111.0 109.1
C26 C25 H252 111.0 109.1
C25 C26 H261 111.0 111.0
C25 C26 H262 111.0 111.0
C25 C26 H263 112.9 110.2
H251 C25 H252 99.4 107.3
H261 C26 H262 99.4 108.3
H261 C26 H263 110.9 108.1
H262 C26 H263 111.0 108.1

Torsion Angles for LK1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O27 S11 O28 N 239.9 127.5
O27 S11 O28 C12 124.0 237.1
N S11 O28 C12 244.1 109.6
O28 S11 N CA 328.4 156.2
O28 S11 N H 203.1 2.0
O28 S11 C12 C17 166.1 24.6
O28 S11 C12 C13 342.3 204.6
O28 S11 O27 N 123.2 232.7
O28 S11 O27 C12 234.7 123.4
N S11 O27 C12 111.5 250.7
O27 S11 N CA 90.8 22.8
O27 S11 N H 325.6 228.6
O27 S11 C12 C17 41.5 155.3
O27 S11 C12 C13 217.7 335.3
O28 S11 N O27 237.5 133.4
O28 S11 N C12 121.4 246.2
O27 S11 N C12 243.8 112.8
N S11 C12 C17 287.4 270.0
N S11 C12 C13 103.6 90.0
CA N S11 H 125.3 154.2
S11 N CA C 286.0 274.1
S11 N CA CB 163.9 149.9
S11 N CA HA 40.7 30.0
O28 S11 C12 O27 124.6 229.3
O28 S11 C12 N 238.7 114.6
O27 S11 C12 N 114.1 245.3
C12 S11 N CA 207.0 270.0
C12 S11 N H 81.7 115.8
C17 C12 S11 C13 183.7 180.0
S11 C12 C17 C16 177.9 180.0
S11 C12 C17 H17 357.9 0.0
S11 C12 C13 C14 182.7 180.0
S11 C12 C13 H13 2.7 360.0
CA N S11 C12 207.0 270.0
S11 N CA H 234.8 205.4
C CA N CB 122.1 124.1
C CA N HA 245.3 244.1
N CA C OXT 105.8 175.6
N CA C O 290.0 355.6
CB CA N HA 123.2 120.0
N CA CB CG 191.8 306.4
N CA CB HBC1 66.5 181.9
N CA CB HBC2 317.0 67.2
H N S11 C12 81.7 115.8
S11 N H CA 140.1 155.2
H N CA C 51.2 68.7
H N CA CB 289.1 304.5
H N CA HA 165.9 184.6
C CA N H 51.2 68.7
N CA C CB 240.7 235.8
N CA C HA 117.7 115.5
CB CA C HA 237.1 239.7
C CA CB CG 65.2 184.5
C CA CB HBC1 299.9 60.0
C CA CB HBC2 190.4 305.3
OXT C CA O 175.8 180.1
CA C OXT HXT 180.0 179.9
CB CA N H 289.1 304.5
N CA CB C 126.6 121.8
N CA CB HA 241.7 241.3
C CA CB HA 115.1 119.5
CB CA C OXT 225.2 299.8
CB CA C O 49.3 119.7
CG CB CA HBC1 125.3 124.5
CG CB CA HBC2 234.7 239.2
CA CB CG CD 173.1 296.0
CA CB CG HGC1 47.8 59.0
CA CB CG HGC2 298.3 175.6
HBC1 CB CA HBC2 109.5 114.7
HA CA N H 165.9 184.6
N CA HA C 235.9 243.9
N CA HA CB 116.6 121.8
C CA HA CB 240.6 237.9
HA CA C OXT 348.1 60.1
HA CA C O 172.3 240.1
HA CA CB CG 310.1 65.1
HA CA CB HBC1 184.8 300.6
HA CA CB HBC2 75.3 185.9
OXT C CA CB 225.2 299.8
OXT C CA HA 348.1 60.1
CA C OXT O 184.5 179.9
O C CA CB 49.3 119.7
O C CA HA 172.3 240.1
CA C O OXT 175.2 180.1
O C OXT HXT 355.6 360.0
HXT OXT C O 355.6 360.0
CG CB CA HA 310.1 65.1
CA CB CG HBC1 234.7 236.0
CA CB CG HBC2 125.3 121.3
HBC1 CB CG HBC2 250.5 245.3
CD CG CB HGC1 125.2 237.0
CD CG CB HGC2 234.7 120.5
CB CG CD OE2 257.7 153.9
CB CG CD OE1 78.3 334.5
HGC1 CG CB HGC2 109.5 243.4
HBC1 CB CA HA 184.8 300.6
CA CB HBC1 CG 124.7 128.2
CA CB HBC1 HBC2 242.3 243.8
CG CB HBC1 HBC2 117.7 115.6
HBC1 CB CG CD 298.3 60.0
HBC1 CB CG HGC1 173.1 183.0
HBC1 CB CG HGC2 63.6 299.6
HBC2 CB CA HA 75.3 185.9
CA CB HBC2 CG 235.3 233.8
CA CB HBC2 HBC1 117.7 116.6
CG CB HBC2 HBC1 242.3 242.7
HBC2 CB CG CD 47.8 174.7
HBC2 CB CG HGC1 282.6 297.7
HBC2 CB CG HGC2 173.1 54.3
CD CG CB HBC1 298.3 60.0
CD CG CB HBC2 47.8 174.7
CB CG CD HGC1 234.8 124.5
CB CG CD HGC2 125.3 238.2
HGC1 CG CD HGC2 250.5 113.7
OE2 CD CG OE1 179.3 179.4
CG CD OE2 HE2 180.0 180.6
HGC1 CG CB HBC1 173.1 183.0
HGC1 CG CB HBC2 282.6 297.7
CB CG HGC1 CD 123.7 233.9
CB CG HGC1 HGC2 241.9 119.1
CD CG HGC1 HGC2 118.1 245.2
HGC1 CG CD OE2 22.9 29.4
HGC1 CG CD OE1 203.6 210.0
HGC2 CG CB HBC1 63.6 299.6
HGC2 CG CB HBC2 173.1 54.3
CB CG HGC2 CD 236.3 124.4
CB CG HGC2 HGC1 118.1 239.9
CD CG HGC2 HGC1 241.9 115.6
HGC2 CG CD OE2 132.4 275.7
HGC2 CG CD OE1 313.1 96.3
OE2 CD CG HGC1 22.9 29.4
OE2 CD CG HGC2 132.4 275.7
CG CD OE2 OE1 180.7 180.6
OE1 CD CG HGC1 203.6 210.0
OE1 CD CG HGC2 313.1 96.3
CG CD OE1 OE2 179.3 179.4
OE1 CD OE2 HE2 359.2 0.0
HE2 OE2 CD OE1 359.2 0.0
S11 C12 C17 C13 176.5 180.0
C17 C12 C13 C14 358.8 360.0
C17 C12 C13 H13 178.8 180.0
C16 C17 C12 H17 180.0 180.0
C12 C17 C16 C15 359.5 360.0
C12 C17 C16 H16 179.4 180.0
S11 C12 C13 C17 183.9 180.0
C13 C12 C17 C16 1.4 0.0
C13 C12 C17 H17 181.4 180.0
C15 C14 C13 C12 0.1 0.1
C18 C14 C13 C12 180.9 180.0
C14 C13 C12 H13 180.0 180.0
C16 C17 C12 C13 1.4 0.0
C12 C17 C16 H17 180.0 180.0
C15 C16 C17 H16 180.0 179.9
C17 C16 C15 C21 179.0 180.0
C17 C16 C15 C14 359.4 0.1
H17 C17 C12 C13 181.4 180.0
C12 C17 H17 C16 180.0 180.0
H17 C17 C16 C15 179.5 180.0
H17 C17 C16 H16 359.4 0.1
C15 C16 C17 H17 179.5 180.0
C17 C16 C15 H16 180.0 180.1
C21 C15 C16 C14 179.5 180.0
C16 C15 C21 C20 178.4 180.0
C16 C15 C21 H21 358.4 0.0
C16 C15 C14 C18 180.0 180.0
C16 C15 C14 C13 0.8 359.9
H16 C16 C17 H17 359.4 0.1
C17 C16 H16 C15 180.0 179.9
H16 C16 C15 C21 359.0 359.9
H16 C16 C15 C14 179.5 180.0
C21 C15 C16 H16 359.0 359.9
C16 C15 C21 C14 180.5 180.0
C21 C15 C14 C18 0.5 0.0
C21 C15 C14 C13 181.2 180.0
C20 C21 C15 H21 180.0 180.0
C15 C21 C20 C19 2.6 0.0
C15 C21 C20 O22 179.7 180.1
C12 C13 C14 C15 0.1 0.1
C14 C15 C16 H16 179.5 180.0
C16 C15 C14 C21 179.5 180.0
C14 C15 C21 C20 358.0 360.0
C14 C15 C21 H21 177.9 180.0
C19 C18 C14 C15 0.5 360.0
C15 C14 C18 H18 180.5 180.0
C18 C14 C15 C13 179.2 180.1
C15 C14 C13 H13 180.1 180.0
C20 C21 C15 C14 358.0 360.0
C15 C21 C20 H21 180.0 180.0
C19 C20 C21 O22 182.8 180.0
C21 C20 C19 C18 358.4 360.0
C21 C20 C19 H19 178.4 180.0
C21 C20 O22 C23 226.1 209.9
H21 C21 C15 C14 177.9 180.0
C15 C21 H21 C20 180.0 180.0
H21 C21 C20 C19 182.6 180.0
H21 C21 C20 O22 359.8 0.0
C19 C20 C21 H21 182.6 180.0
C21 C20 C19 O22 177.1 180.0
C19 C20 O22 C23 43.2 30.0
C18 C19 C20 H19 180.0 180.0
C20 C19 C18 C14 0.0 0.0
C20 C19 C18 H18 180.0 180.0
O22 C20 C21 H21 359.8 0.0
C21 C20 O22 C19 182.9 180.0
O22 C20 C19 C18 181.4 179.9
O22 C20 C19 H19 1.3 360.0
C20 O22 C23 C24 100.4 150.8
C20 O22 C23 H231 335.2 30.0
C20 O22 C23 H232 225.7 271.6
C15 C14 C18 C19 0.5 360.0
C18 C19 C20 O22 181.4 179.9
C20 C19 C18 H19 180.0 180.0
C14 C18 C19 H18 180.0 180.0
C19 C18 C14 C13 179.8 180.0
H19 C19 C20 O22 1.3 360.0
C20 C19 H19 C18 180.0 180.0
H19 C19 C18 C14 180.0 180.0
H19 C19 C18 H18 0.0 0.0
C12 C13 C14 C18 180.9 180.0
C15 C14 C18 C13 180.8 179.9
C14 C18 C19 H19 180.0 180.0
C19 C18 C14 H18 180.0 180.0
C18 C14 C13 H13 0.9 360.0
H18 C18 C19 H19 0.0 0.0
C19 C18 H18 C14 180.0 180.0
H18 C18 C14 C13 359.8 0.0
C12 C13 C14 H13 180.0 180.0
C15 C14 C13 C18 179.2 180.1
C13 C14 C18 H18 359.8 0.0
C12 C13 H13 C14 180.0 180.0
C24 C23 O22 H231 125.2 120.8
C24 C23 O22 H232 234.7 239.2
O22 C23 C24 C25 172.5 180.7
O22 C23 C24 H241 47.3 58.3
O22 C23 C24 H242 297.8 302.9
H231 C23 O22 H232 109.5 118.4
O22 C23 C24 H231 234.8 240.6
O22 C23 C24 H232 125.3 119.3
H231 C23 C24 H232 250.5 238.7
C25 C24 C23 H241 125.2 122.3
C25 C24 C23 H242 234.7 237.8
C23 C24 C25 C26 218.9 178.2
C23 C24 C25 H251 93.7 57.1
C23 C24 C25 H252 344.2 299.3
H241 C24 C23 H242 109.5 115.5
O22 C23 H231 C24 125.7 119.5
O22 C23 H231 H232 242.9 241.9
C24 C23 H231 H232 117.1 122.4
H231 C23 C24 C25 297.8 300.0
H231 C23 C24 H241 172.5 177.7
H231 C23 C24 H242 63.0 62.3
O22 C23 H232 C24 234.2 240.5
O22 C23 H232 H231 117.1 118.1
C24 C23 H232 H231 242.9 237.6
H232 C23 C24 C25 47.2 61.3
H232 C23 C24 H241 282.0 299.0
H232 C23 C24 H242 172.5 183.5
C25 C24 C23 H231 297.8 300.0
C25 C24 C23 H232 47.2 61.3
C23 C24 C25 H241 234.8 238.2
C23 C24 C25 H242 125.3 121.7
H241 C24 C25 H242 250.5 243.5
C26 C25 C24 H251 125.2 121.1
C26 C25 C24 H252 234.7 238.9
C24 C25 C26 H261 54.8 299.8
C24 C25 C26 H262 305.3 60.3
C24 C25 C26 H263 180.0 180.1
H251 C25 C24 H252 109.5 117.8
H241 C24 C23 H231 172.5 177.7
H241 C24 C23 H232 282.0 299.0
C23 C24 H241 C25 123.2 123.1
C23 C24 H241 H242 241.6 242.3
C25 C24 H241 H242 118.4 119.2
H241 C24 C25 C26 344.2 300.0
H241 C24 C25 H251 218.9 178.9
H241 C24 C25 H252 109.5 61.1
H242 C24 C23 H231 63.0 62.3
H242 C24 C23 H232 172.5 183.5
C23 C24 H242 C25 236.8 236.9
C23 C24 H242 H241 118.4 117.7
C25 C24 H242 H241 241.6 240.7
H242 C24 C25 C26 93.7 56.5
H242 C24 C25 H251 328.4 295.4
H242 C24 C25 H252 219.0 177.6
C26 C25 C24 H241 344.2 300.0
C26 C25 C24 H242 93.7 56.5
C24 C25 C26 H251 234.8 238.4
C24 C25 C26 H252 125.3 121.5
H251 C25 C26 H252 250.5 243.1
H261 C26 C25 H262 109.5 239.5
H261 C26 C25 H263 234.8 119.7
H262 C26 C25 H263 125.3 240.2
H251 C25 C24 H241 218.9 178.9
H251 C25 C24 H242 328.4 295.4
C24 C25 H251 C26 126.3 122.5
C24 C25 H251 H252 243.2 240.6
C26 C25 H251 H252 116.9 118.1
H251 C25 C26 H261 180.0 61.3
H251 C25 C26 H262 70.5 181.8
H251 C25 C26 H263 305.2 301.6
H252 C25 C24 H241 109.5 61.1
H252 C25 C24 H242 219.0 177.6
C24 C25 H252 C26 233.7 237.5
C24 C25 H252 H251 116.8 119.4
C26 C25 H252 H251 243.1 241.9
H252 C25 C26 H261 289.5 178.2
H252 C25 C26 H262 180.0 298.8
H252 C25 C26 H263 54.7 58.6
H261 C26 C25 H251 180.0 61.3
H261 C26 C25 H252 289.5 178.2
C25 C26 H261 H262 243.1 122.1
C25 C26 H261 H263 126.3 239.0
H262 C26 H261 H263 243.2 116.9
H262 C26 C25 H251 70.5 181.8
H262 C26 C25 H252 180.0 298.8
C25 C26 H262 H261 116.9 237.9
C25 C26 H262 H263 233.7 121.0
H261 C26 H262 H263 116.8 243.1
H263 C26 C25 H251 305.2 301.6
H263 C26 C25 H252 54.7 58.6
C25 C26 H263 H261 234.7 121.4
C25 C26 H263 H262 125.3 238.5
H261 C26 H263 H262 250.6 117.0