PDB Chemical Component LIP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LIP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.539	1.530
C1	C6	1.555	1.530
C1	O1	1.457	1.429
C1	H1	1.100	1.089
C2	C3	1.515	1.530
C2	O2	1.411	1.429
C2	H2	1.100	1.090
C3	C4	1.516	1.530
C3	O3	1.432	1.428
C3	H3	1.100	1.091
C4	C5	1.531	1.530
C4	O4	1.418	1.429
C4	H4	1.100	1.090
C5	C6	1.523	1.530
C5	O5	1.431	1.429
C5	H5	1.100	1.091
C6	O6	1.433	1.428
C6	H6	1.100	1.090
P1	O1	1.546	1.610
P1	O7	1.466	1.567
P1	O8	1.531	1.567
P1	O9	1.505	1.566
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O5	HO5	0.950	0.967
O6	HO6	0.950	0.968

Bond Angles for LIP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	108.3	109.5
C2	C1	O1	109.3	109.4
C2	C1	H1	109.3	109.5
C1	C2	C3	112.7	109.5
C1	C2	O2	109.4	109.5
C1	C2	H2	107.8	109.5
C6	C1	O1	110.5	109.5
C6	C1	H1	109.1	109.5
C1	C6	C5	111.4	109.4
C1	C6	O6	109.6	109.5
C1	C6	H6	108.7	109.5
O1	C1	H1	110.4	109.5
C1	O1	P1	118.9	123.0
C3	C2	O2	109.2	109.5
C3	C2	H2	108.2	109.5
C2	C3	C4	109.0	109.5
C2	C3	O3	108.5	109.5
C2	C3	H3	109.2	109.4
O2	C2	H2	109.5	109.5
C2	O2	HO2	109.5	114.0
C4	C3	O3	110.7	109.5
C4	C3	H3	109.1	109.5
C3	C4	C5	109.5	109.5
C3	C4	O4	109.8	109.5
C3	C4	H4	109.3	109.4
O3	C3	H3	110.3	109.5
C3	O3	HO3	109.5	114.0
C5	C4	O4	108.4	109.5
C5	C4	H4	109.1	109.4
C4	C5	C6	109.9	109.5
C4	C5	O5	108.9	109.5
C4	C5	H5	109.2	109.5
O4	C4	H4	110.7	109.5
C4	O4	HO4	109.5	114.0
C6	C5	O5	108.9	109.5
C6	C5	H5	109.3	109.4
C5	C6	O6	107.7	109.5
C5	C6	H6	109.1	109.5
O5	C5	H5	110.6	109.5
C5	O5	HO5	109.5	114.0
O6	C6	H6	110.3	109.5
C6	O6	HO6	109.5	114.0
O1	P1	O7	111.6	109.5
O1	P1	O8	108.6	109.5
O1	P1	O9	110.3	109.5
O7	P1	O8	110.0	109.5
O7	P1	O9	111.3	109.4
O8	P1	O9	104.8	109.5

Torsion Angles for LIP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	O1	120.4	120.0
C6	C1	C2	H1	241.3	240.0
C2	C1	C6	C5	54.5	60.0
C2	C1	C6	O6	295.4	300.0
C2	C1	C6	H6	174.7	180.0
O1	C1	C2	H1	120.9	120.0
C2	C1	O1	P1	201.6	240.0
C3	C2	C1	O2	121.7	120.0
C3	C2	C1	H2	240.7	240.0
C1	C2	C3	C4	59.7	60.0
C1	C2	C3	O3	180.3	180.0
C1	C2	C3	H3	300.6	300.0
O2	C2	C1	H2	119.0	120.0
C1	C2	O2	HO2	180.0	180.0
C2	C1	C6	O1	240.3	240.0
C2	C1	C6	H1	118.8	120.0
C6	C1	C2	C3	304.3	300.0
C6	C1	C2	O2	182.6	180.0
C6	C1	C2	H2	63.6	60.0
O1	C1	C6	H1	238.5	240.0
C6	C1	O1	P1	82.5	120.0
C4	C5	C6	C1	301.9	300.0
C1	C6	C5	O5	182.6	180.0
C1	C6	C5	H5	61.7	60.0
C5	C6	C1	O6	119.0	120.0
C5	C6	C1	H6	239.7	240.0
O6	C6	C1	H6	120.7	120.0
C1	C6	O6	HO6	180.0	180.0
C2	C1	O1	C6	119.1	120.0
C2	C1	O1	H1	239.8	240.0
O1	C1	C2	C3	183.9	180.0
O1	C1	C2	O2	62.2	60.0
O1	C1	C2	H2	303.2	300.0
C6	C1	O1	H1	120.7	120.0
O1	C1	C6	C5	174.2	180.0
O1	C1	C6	O6	55.1	60.0
O1	C1	C6	H6	294.4	300.0
C1	O1	P1	O7	42.2	305.0
C1	O1	P1	O8	163.6	65.0
C1	O1	P1	O9	278.0	185.0
C2	C1	H1	C6	241.8	240.0
C2	C1	H1	O1	120.2	120.0
H1	C1	C2	C3	63.0	60.0
H1	C1	C2	O2	301.3	300.0
H1	C1	C2	H2	182.3	180.0
C6	C1	H1	O1	238.4	240.0
H1	C1	C6	C5	295.6	300.0
H1	C1	C6	O6	176.6	180.0
H1	C1	C6	H6	55.9	60.0
H1	C1	O1	P1	321.8	360.0
C3	C2	C1	C6	304.3	300.0
C3	C2	C1	O1	183.9	180.0
C3	C2	C1	H1	63.0	60.0
C1	C2	C3	O2	238.2	240.0
C1	C2	C3	H2	119.1	120.0
O2	C2	C3	H2	240.9	240.0
C3	C2	O2	HO2	56.3	60.0
C4	C3	C2	O3	239.4	240.0
C4	C3	C2	H3	119.1	119.9
C2	C3	C4	C5	299.3	300.1
C2	C3	C4	O4	180.3	180.0
C2	C3	C4	H4	58.7	60.0
O3	C3	C2	H3	239.7	240.0
C2	C3	O3	HO3	180.0	180.0
O2	C2	C1	C6	182.6	180.0
O2	C2	C1	O1	62.2	60.0
O2	C2	C1	H1	301.3	300.0
C1	C2	O2	C3	123.8	120.0
C1	C2	O2	H2	242.0	240.0
C3	C2	O2	H2	118.3	120.0
O2	C2	C3	C4	181.4	180.0
O2	C2	C3	O3	302.0	300.0
O2	C2	C3	H3	62.3	60.0
H2	C2	C1	C6	63.6	60.0
H2	C2	C1	O1	303.2	300.0
H2	C2	C1	H1	182.3	180.0
C1	C2	H2	C3	237.8	240.0
C1	C2	H2	O2	118.9	120.0
C3	C2	H2	O2	241.1	240.0
H2	C2	C3	C4	300.6	299.9
H2	C2	C3	O3	61.1	60.0
H2	C2	C3	H3	181.4	180.0
H2	C2	O2	HO2	298.0	300.0
C4	C3	C2	O2	181.4	180.0
C4	C3	C2	H2	300.6	299.9
C2	C3	C4	O3	119.3	120.0
C2	C3	C4	H3	240.9	240.1
O3	C3	C4	H3	121.6	120.0
C4	C3	O3	HO3	299.5	300.0
C5	C4	C3	O4	118.9	120.1
C5	C4	C3	H4	240.6	240.0
C3	C4	C5	C6	60.8	60.0
C3	C4	C5	O5	180.1	180.0
C3	C4	C5	H5	300.9	300.0
O4	C4	C3	H4	121.6	120.0
C3	C4	O4	HO4	180.0	180.0
O3	C3	C2	O2	302.0	300.0
O3	C3	C2	H2	61.1	60.0
C2	C3	O3	C4	240.5	240.0
C2	C3	O3	H3	119.6	120.0
C4	C3	O3	H3	239.1	240.0
O3	C3	C4	C5	180.0	180.0
O3	C3	C4	O4	61.1	60.0
O3	C3	C4	H4	299.5	300.0
H3	C3	C2	O2	62.3	60.0
H3	C3	C2	H2	181.4	180.0
C2	C3	H3	C4	119.0	120.0
C2	C3	H3	O3	240.8	240.0
C4	C3	H3	O3	121.8	120.0
H3	C3	C4	C5	58.4	60.0
H3	C3	C4	O4	299.5	299.9
H3	C3	C4	H4	177.9	180.0
H3	C3	O3	HO3	60.4	60.0
C1	C6	C5	C4	301.9	300.0
C5	C4	C3	O3	180.0	180.0
C5	C4	C3	H3	58.4	60.0
C3	C4	C5	O4	240.2	239.9
C3	C4	C5	H4	119.6	120.0
O4	C4	C5	H4	239.4	240.0
C5	C4	O4	HO4	60.3	59.9
C6	C5	C4	O5	240.7	240.0
C6	C5	C4	H5	119.9	120.0
C4	C5	C6	O6	62.0	60.0
C4	C5	C6	H6	181.8	180.0
O5	C5	C4	H5	239.2	240.0
C4	C5	O5	HO5	180.0	60.0
O4	C4	C3	O3	61.1	60.0
O4	C4	C3	H3	299.5	299.9
C3	C4	O4	C5	119.7	120.1
C3	C4	O4	H4	239.2	240.0
C5	C4	O4	H4	119.6	120.0
O4	C4	C5	C6	180.7	180.0
O4	C4	C5	O5	299.9	300.0
O4	C4	C5	H5	60.8	60.1
H4	C4	C3	O3	299.5	300.0
H4	C4	C3	H3	177.9	180.0
C3	C4	H4	C5	240.3	240.0
C3	C4	H4	O4	121.1	120.0
C5	C4	H4	O4	240.8	240.0
H4	C4	C5	C6	301.3	300.0
H4	C4	C5	O5	60.5	60.0
H4	C4	C5	H5	181.4	180.0
H4	C4	O4	HO4	300.8	300.0
C5	C6	C1	O1	174.2	180.0
C5	C6	C1	H1	295.6	300.0
C1	C6	C5	O6	239.8	240.0
C1	C6	C5	H6	120.0	120.0
C6	C5	C4	O4	180.7	180.0
C6	C5	C4	H4	301.3	300.0
C4	C5	C6	O5	119.3	120.0
C4	C5	C6	H5	240.2	240.0
O5	C5	C6	H5	120.9	120.0
C6	C5	O5	HO5	299.9	180.1
O6	C6	C5	H6	240.2	240.0
C5	C6	O6	HO6	58.7	60.0
O5	C5	C4	O4	299.9	300.0
O5	C5	C4	H4	60.5	60.0
C4	C5	O5	C6	240.1	240.0
C4	C5	O5	H5	120.0	120.0
C6	C5	O5	H5	239.9	240.1
O5	C5	C6	O6	302.7	300.0
O5	C5	C6	H6	62.5	60.0
H5	C5	C4	O4	60.8	60.1
H5	C5	C4	H4	181.4	180.0
C4	C5	H5	C6	120.3	120.0
C4	C5	H5	O5	240.2	240.0
C6	C5	H5	O5	119.9	120.0
H5	C5	C6	O6	181.9	180.0
H5	C5	C6	H6	301.6	300.0
H5	C5	O5	HO5	60.0	300.0
O6	C6	C1	O1	55.1	60.0
O6	C6	C1	H1	176.6	180.0
C1	C6	O6	C5	121.3	120.0
C1	C6	O6	H6	240.3	240.0
O6	C6	C5	O5	302.7	300.0
O6	C6	C5	H5	181.9	180.0
C5	C6	O6	H6	119.0	120.0
H6	C6	C1	O1	294.4	300.0
H6	C6	C1	H1	55.9	60.0
C1	C6	H6	C5	238.3	240.0
C1	C6	H6	O6	120.2	120.0
H6	C6	C5	O5	62.5	60.0
H6	C6	C5	H5	301.6	300.0
C5	C6	H6	O6	241.9	240.0
H6	C6	O6	HO6	299.7	300.0
P1	O1	C1	H1	321.8	360.0
O7	P1	O1	O8	238.6	240.0
O7	P1	O1	O9	124.3	120.0
O8	P1	O1	O9	245.7	240.0
O1	P1	O7	O8	120.6	120.0
O1	P1	O7	O9	236.3	240.0
O8	P1	O7	O9	115.7	120.0
O1	P1	O8	O7	237.6	240.0
O1	P1	O8	O9	117.9	120.0
O7	P1	O8	O9	240.3	240.0
O1	P1	O9	O7	124.4	120.0
O1	P1	O9	O8	243.2	240.0
O7	P1	O9	O8	118.8	120.0
HO2	O2	C2	H2	298.0	300.0
HO3	O3	C3	H3	60.4	60.0
HO4	O4	C4	H4	300.8	300.0
HO5	O5	C5	H5	60.0	300.0
HO6	O6	C6	H6	299.7	300.0