Atom Nomenclature for LI6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LI6

Atom Name (V3) Atom Name (V2)
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
O12 O12
C9 C9
O13 O13
N10 N10
C11 C11
O14 O14
C3 C3
C2 C2
C1 C1
H4 H4
H13 H13
H111 1H11
H112 2H11
H113 3H11
H14 H14
H3 H3
H2 H2
H1 H1