PDB Chemical Component LHB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LHB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
N2 |
1.335 |
1.320 |
| C4 |
N1 |
1.336 |
1.316 |
| N2 |
C1 |
1.351 |
1.329 |
| N1 |
C3 |
1.338 |
1.329 |
| C1 |
N6 |
1.336 |
1.384 |
| C1 |
C2 |
1.407 |
1.405 |
| C3 |
C2 |
1.387 |
1.405 |
| C3 |
N3 |
1.372 |
1.371 |
| O2 |
C9 |
1.424 |
1.430 |
| C2 |
N4 |
1.386 |
1.354 |
| C6 |
N3 |
1.456 |
1.466 |
| C6 |
C9 |
1.527 |
1.550 |
| C6 |
O1 |
1.407 |
1.444 |
| O3 |
C8 |
1.422 |
1.429 |
| N3 |
C5 |
1.372 |
1.363 |
| C9 |
C8 |
1.540 |
1.548 |
| O1 |
C7 |
1.438 |
1.437 |
| C8 |
C7 |
1.533 |
1.541 |
| C7 |
C10 |
1.516 |
1.529 |
| N4 |
C5 |
1.311 |
1.301 |
| C10 |
N5 |
1.467 |
1.469 |
| N5 |
C11 |
1.469 |
1.470 |
| N9 |
C13 |
1.337 |
1.375 |
| C11 |
C12 |
1.583 |
1.507 |
| C13 |
C12 |
1.452 |
1.409 |
| C13 |
N7 |
1.336 |
1.327 |
| C12 |
C15 |
1.348 |
1.354 |
| N7 |
C14 |
1.356 |
1.331 |
| C15 |
N8 |
1.369 |
1.362 |
| C14 |
N8 |
1.393 |
1.346 |
| C14 |
O5 |
1.231 |
1.219 |
| N8 |
C16 |
1.468 |
1.465 |
| C16 |
O4 |
1.400 |
1.429 |
| O4 |
C17 |
1.416 |
1.429 |
| C4 |
H1 |
1.080 |
1.081 |
| C5 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.100 |
1.089 |
| C7 |
H4 |
1.100 |
1.090 |
| C8 |
H5 |
1.100 |
1.091 |
| C9 |
H6 |
1.100 |
1.090 |
| O2 |
H7 |
0.950 |
0.967 |
| O3 |
H8 |
0.950 |
0.967 |
| C10 |
H10 |
1.100 |
1.091 |
| C10 |
H9 |
1.100 |
1.090 |
| N5 |
H11 |
1.000 |
1.009 |
| C11 |
H12 |
1.100 |
1.090 |
| C11 |
H13 |
1.100 |
1.091 |
| N6 |
H14 |
1.000 |
0.970 |
| N6 |
H15 |
1.000 |
0.970 |
| C15 |
H16 |
1.080 |
1.081 |
| N9 |
H18 |
1.000 |
0.970 |
| N9 |
H17 |
1.000 |
0.971 |
| C16 |
H20 |
1.100 |
1.090 |
| C16 |
H19 |
1.100 |
1.090 |
| C17 |
H22 |
1.100 |
1.090 |
| C17 |
H23 |
1.100 |
1.090 |
| C17 |
H21 |
1.100 |
1.090 |
Bond Angles for LHB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C4 |
H1 |
115.5 |
118.8 |
| N2 |
C1 |
N6 |
118.5 |
120.8 |
| N1 |
C3 |
N3 |
127.5 |
135.0 |
| C2 |
C1 |
N6 |
123.8 |
120.8 |
| C1 |
N6 |
H14 |
109.5 |
120.0 |
| C1 |
N6 |
H15 |
109.5 |
119.9 |
| C1 |
C2 |
N4 |
132.3 |
134.7 |
| C3 |
C2 |
N4 |
110.7 |
107.1 |
| C3 |
N3 |
C5 |
105.7 |
107.5 |
| O2 |
C9 |
H6 |
111.8 |
110.8 |
| C2 |
N4 |
C5 |
103.7 |
109.4 |
| O1 |
C6 |
C9 |
105.4 |
103.5 |
| C6 |
C9 |
C8 |
103.0 |
102.1 |
| C9 |
C6 |
H3 |
108.5 |
110.7 |
| C6 |
C9 |
H6 |
110.2 |
110.9 |
| C6 |
O1 |
C7 |
106.8 |
107.0 |
| O1 |
C6 |
H3 |
110.2 |
110.8 |
| O3 |
C8 |
H5 |
111.4 |
110.4 |
| N3 |
C5 |
H2 |
123.0 |
125.0 |
| C9 |
C8 |
H5 |
109.7 |
110.5 |
| O1 |
C7 |
C10 |
109.6 |
109.9 |
| O1 |
C7 |
H4 |
109.9 |
109.9 |
| C8 |
C7 |
C10 |
113.7 |
109.9 |
| C8 |
C7 |
H4 |
108.6 |
109.9 |
| C7 |
C10 |
N5 |
112.3 |
109.5 |
| C10 |
C7 |
H4 |
108.8 |
109.9 |
| C7 |
C10 |
H10 |
108.8 |
109.5 |
| C7 |
C10 |
H9 |
108.8 |
109.5 |
| N4 |
C5 |
H2 |
123.0 |
125.0 |
| C10 |
N5 |
C11 |
112.4 |
111.0 |
| N5 |
C10 |
H10 |
108.7 |
109.4 |
| N5 |
C10 |
H9 |
108.8 |
109.5 |
| C10 |
N5 |
H11 |
108.8 |
111.0 |
| N5 |
C11 |
C12 |
113.1 |
109.5 |
| C11 |
N5 |
H11 |
108.7 |
111.0 |
| N5 |
C11 |
H12 |
108.6 |
109.5 |
| N5 |
C11 |
H13 |
108.6 |
109.4 |
| C11 |
C12 |
C15 |
118.8 |
120.5 |
| C12 |
C11 |
H12 |
108.6 |
109.5 |
| C12 |
C11 |
H13 |
108.6 |
109.5 |
| C13 |
C12 |
C15 |
115.0 |
119.0 |
| C13 |
N7 |
C14 |
121.0 |
120.7 |
| C12 |
C15 |
N8 |
123.0 |
119.3 |
| C12 |
C15 |
H16 |
118.5 |
120.4 |
| N7 |
C14 |
N8 |
118.6 |
121.1 |
| N7 |
C14 |
O5 |
122.4 |
119.5 |
| C15 |
N8 |
C16 |
119.2 |
119.8 |
| N8 |
C14 |
O5 |
118.9 |
119.4 |
| C14 |
N8 |
C16 |
120.5 |
119.8 |
| N8 |
C16 |
O4 |
112.3 |
109.5 |
| N8 |
C16 |
H20 |
108.8 |
109.4 |
| N8 |
C16 |
H19 |
108.8 |
109.5 |
| C16 |
O4 |
C17 |
113.6 |
114.0 |
| O4 |
C16 |
H20 |
108.7 |
109.5 |
| O4 |
C16 |
H19 |
108.8 |
109.5 |
| O4 |
C17 |
H22 |
109.5 |
109.4 |
| O4 |
C17 |
H23 |
109.5 |
109.5 |
| O4 |
C17 |
H21 |
109.5 |
109.5 |
| H10 |
C10 |
H9 |
109.5 |
109.4 |
| H12 |
C11 |
H13 |
109.5 |
109.5 |
| H14 |
N6 |
H15 |
109.4 |
120.0 |
| H18 |
N9 |
H17 |
120.0 |
120.0 |
| H20 |
C16 |
H19 |
109.5 |
109.5 |
| H22 |
C17 |
H23 |
109.5 |
109.5 |
| H22 |
C17 |
H21 |
109.4 |
109.5 |
| H23 |
C17 |
H21 |
109.5 |
109.5 |
Torsion Angles for LHB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
N2 |
C1 |
N6 |
180.6 |
179.7 |
| C4 |
N1 |
C3 |
N3 |
179.6 |
180.0 |
| C2 |
C1 |
N2 |
N6 |
179.6 |
179.7 |
| N2 |
C1 |
N6 |
H14 |
0.0 |
179.7 |
| N2 |
C1 |
N6 |
H15 |
120.0 |
359.7 |
| N2 |
C1 |
C2 |
N4 |
179.7 |
180.3 |
| N1 |
C3 |
C2 |
N4 |
180.4 |
180.0 |
| N1 |
C3 |
N3 |
C5 |
179.5 |
180.0 |
| N6 |
C1 |
C2 |
N4 |
359.2 |
360.0 |
| H14 |
N6 |
C1 |
H15 |
240.0 |
180.0 |
| N2 |
C1 |
C2 |
N6 |
180.5 |
180.3 |
| C2 |
C1 |
N6 |
H14 |
180.5 |
0.0 |
| C2 |
C1 |
N6 |
H15 |
300.4 |
180.0 |
| C3 |
C2 |
C1 |
N4 |
179.8 |
180.0 |
| C1 |
C2 |
N4 |
C5 |
179.6 |
180.0 |
| C3 |
C2 |
C1 |
N6 |
179.1 |
180.0 |
| C1 |
C2 |
C3 |
N4 |
180.1 |
180.0 |
| C3 |
C2 |
N4 |
C5 |
359.8 |
0.0 |
| N3 |
C3 |
C2 |
N4 |
0.5 |
0.0 |
| C3 |
N3 |
C5 |
H2 |
180.5 |
180.1 |
| O2 |
C9 |
C6 |
H3 |
32.1 |
36.6 |
| C6 |
C9 |
O2 |
H6 |
122.9 |
123.7 |
| O2 |
C9 |
C8 |
H5 |
112.5 |
102.2 |
| N4 |
C2 |
C1 |
N6 |
359.2 |
360.0 |
| C2 |
N4 |
C5 |
H2 |
179.8 |
179.9 |
| C6 |
N3 |
C5 |
H2 |
2.8 |
0.1 |
| O2 |
C9 |
C6 |
H6 |
236.2 |
236.4 |
| C9 |
C6 |
O1 |
C7 |
320.6 |
319.9 |
| O1 |
C6 |
C9 |
H3 |
118.0 |
118.7 |
| C6 |
C9 |
C8 |
H5 |
230.6 |
220.4 |
| O1 |
C6 |
C9 |
C8 |
31.2 |
37.1 |
| C9 |
C6 |
O1 |
H3 |
243.1 |
241.4 |
| O1 |
C6 |
C9 |
H6 |
273.9 |
278.9 |
| C6 |
O1 |
C7 |
C10 |
154.5 |
145.9 |
| C6 |
O1 |
C7 |
H4 |
274.0 |
267.0 |
| C9 |
C8 |
O3 |
H5 |
123.0 |
122.6 |
| O3 |
C8 |
C7 |
C10 |
109.1 |
119.8 |
| O3 |
C8 |
C7 |
H4 |
347.9 |
358.7 |
| C2 |
N4 |
C5 |
N3 |
359.8 |
360.0 |
| N4 |
C5 |
N3 |
H2 |
180.0 |
180.0 |
| C8 |
C9 |
C6 |
H3 |
273.2 |
278.4 |
| C6 |
C9 |
C8 |
H6 |
242.6 |
241.8 |
| O3 |
C8 |
C9 |
H5 |
236.1 |
237.4 |
| C9 |
C8 |
C7 |
C10 |
228.9 |
238.6 |
| C9 |
C8 |
C7 |
H4 |
107.7 |
117.5 |
| C7 |
O1 |
C6 |
C9 |
320.6 |
319.9 |
| C7 |
O1 |
C6 |
H3 |
77.4 |
78.5 |
| C8 |
C7 |
O1 |
C10 |
236.8 |
240.6 |
| C8 |
C7 |
O1 |
H4 |
117.3 |
119.5 |
| O1 |
C7 |
C10 |
N5 |
305.7 |
66.5 |
| C10 |
C7 |
O1 |
H4 |
240.5 |
238.9 |
| O1 |
C7 |
C10 |
H10 |
66.1 |
186.4 |
| O1 |
C7 |
C10 |
H9 |
185.3 |
306.4 |
| C6 |
C9 |
C8 |
C7 |
348.1 |
339.1 |
| O1 |
C7 |
C8 |
C10 |
120.6 |
119.4 |
| O1 |
C7 |
C8 |
H4 |
241.8 |
240.5 |
| C8 |
C7 |
C10 |
N5 |
64.4 |
184.3 |
| C10 |
C7 |
C8 |
H4 |
121.2 |
121.1 |
| C8 |
C7 |
C10 |
H10 |
184.8 |
304.2 |
| C8 |
C7 |
C10 |
H9 |
304.0 |
64.3 |
| O1 |
C7 |
C10 |
H4 |
120.2 |
121.1 |
| C8 |
C7 |
C10 |
H4 |
238.9 |
238.9 |
| C7 |
C10 |
N5 |
C11 |
150.7 |
180.0 |
| N5 |
C10 |
C7 |
H10 |
239.6 |
240.1 |
| N5 |
C10 |
C7 |
H9 |
120.4 |
120.0 |
| C7 |
C10 |
N5 |
H11 |
271.2 |
304.0 |
| H10 |
C10 |
C7 |
H9 |
240.8 |
240.0 |
| N3 |
C5 |
N4 |
H2 |
180.0 |
180.0 |
| N5 |
C10 |
C7 |
H4 |
185.5 |
305.4 |
| C7 |
C10 |
N5 |
H10 |
120.4 |
120.0 |
| C7 |
C10 |
N5 |
H9 |
239.6 |
239.9 |
| C10 |
N5 |
C11 |
C12 |
85.8 |
180.0 |
| C11 |
N5 |
C10 |
H11 |
239.6 |
236.0 |
| C10 |
N5 |
C11 |
H12 |
206.3 |
300.0 |
| C10 |
N5 |
C11 |
H13 |
325.3 |
60.0 |
| H10 |
C10 |
N5 |
H9 |
119.2 |
120.0 |
| C11 |
N5 |
C10 |
H10 |
30.3 |
60.0 |
| C11 |
N5 |
C10 |
H9 |
271.1 |
300.0 |
| C10 |
N5 |
C11 |
H11 |
120.5 |
124.0 |
| N5 |
C11 |
C12 |
C15 |
107.3 |
95.0 |
| C12 |
C11 |
N5 |
H12 |
239.5 |
240.0 |
| C12 |
C11 |
N5 |
H13 |
120.5 |
120.0 |
| H12 |
C11 |
N5 |
H13 |
241.0 |
240.0 |
| C12 |
C11 |
N5 |
H11 |
325.3 |
56.0 |
| N5 |
C11 |
C12 |
H12 |
120.5 |
120.0 |
| N5 |
C11 |
C12 |
H13 |
239.5 |
240.0 |
| C13 |
C12 |
C11 |
C15 |
180.9 |
180.2 |
| C11 |
C12 |
C15 |
N8 |
181.4 |
179.7 |
| C11 |
C12 |
C15 |
H16 |
1.4 |
0.0 |
| H12 |
C11 |
C12 |
H13 |
119.0 |
120.0 |
| C11 |
C12 |
C13 |
C15 |
179.1 |
179.8 |
| C13 |
C12 |
C11 |
H12 |
167.7 |
155.3 |
| C13 |
C12 |
C11 |
H13 |
48.7 |
35.2 |
| C13 |
C12 |
C15 |
N8 |
0.6 |
359.5 |
| C13 |
C12 |
C15 |
H16 |
180.6 |
179.8 |
| N7 |
C13 |
C12 |
C15 |
358.6 |
0.2 |
| C13 |
N7 |
C14 |
N8 |
1.0 |
0.0 |
| C13 |
N7 |
C14 |
O5 |
182.6 |
180.0 |
| C15 |
C12 |
C11 |
H12 |
346.8 |
335.0 |
| C15 |
C12 |
C11 |
H13 |
227.8 |
215.0 |
| C12 |
C15 |
N8 |
C16 |
182.9 |
180.3 |
| N8 |
C14 |
N7 |
O5 |
178.5 |
180.0 |
| N7 |
C14 |
N8 |
C16 |
176.2 |
180.0 |
| C12 |
C15 |
N8 |
H16 |
180.0 |
180.3 |
| C15 |
N8 |
C14 |
O5 |
176.7 |
179.7 |
| C14 |
N8 |
C15 |
C16 |
178.0 |
180.3 |
| C15 |
N8 |
C16 |
O4 |
229.5 |
255.3 |
| C15 |
N8 |
C16 |
H20 |
349.9 |
15.3 |
| C15 |
N8 |
C16 |
H19 |
109.1 |
135.3 |
| C12 |
C15 |
N8 |
C14 |
0.9 |
0.5 |
| N7 |
C14 |
N8 |
O5 |
181.5 |
180.0 |
| C15 |
N8 |
C14 |
C16 |
182.0 |
179.7 |
| C14 |
N8 |
C16 |
O4 |
51.5 |
75.0 |
| C14 |
N8 |
C16 |
H20 |
171.9 |
195.0 |
| C14 |
N8 |
C16 |
H19 |
291.1 |
315.0 |
| N7 |
C14 |
O5 |
N8 |
178.5 |
180.0 |
| O5 |
C14 |
N8 |
C16 |
354.8 |
360.0 |
| C16 |
N8 |
C14 |
O5 |
354.8 |
360.0 |
| N8 |
C16 |
O4 |
C17 |
210.3 |
80.0 |
| O4 |
C16 |
N8 |
H20 |
239.6 |
240.0 |
| O4 |
C16 |
N8 |
H19 |
120.4 |
120.0 |
| H20 |
C16 |
N8 |
H19 |
240.8 |
240.0 |
| N8 |
C16 |
O4 |
H20 |
120.4 |
120.0 |
| N8 |
C16 |
O4 |
H19 |
239.6 |
240.0 |
| C16 |
O4 |
C17 |
H22 |
180.0 |
300.0 |
| C16 |
O4 |
C17 |
H23 |
300.0 |
59.9 |
| C16 |
O4 |
C17 |
H21 |
60.0 |
180.0 |
| H20 |
C16 |
O4 |
H19 |
119.2 |
120.0 |
| C17 |
O4 |
C16 |
H20 |
89.9 |
320.1 |
| C17 |
O4 |
C16 |
H19 |
330.7 |
200.0 |
| H22 |
C17 |
O4 |
H23 |
240.0 |
240.0 |
| H22 |
C17 |
O4 |
H21 |
120.0 |
120.0 |
| H23 |
C17 |
O4 |
H21 |
240.0 |
240.0 |
| O1 |
C6 |
H3 |
C9 |
245.1 |
245.8 |
| H3 |
C6 |
C9 |
C8 |
273.2 |
278.4 |
| H3 |
C6 |
C9 |
H6 |
155.9 |
160.2 |
| H3 |
C6 |
O1 |
C7 |
77.4 |
78.5 |
| O1 |
C7 |
H4 |
C10 |
240.0 |
239.0 |
| C8 |
C7 |
H4 |
C10 |
124.2 |
121.1 |
| H4 |
C7 |
C10 |
N5 |
185.5 |
305.4 |
| H4 |
C7 |
C10 |
H10 |
305.9 |
65.4 |
| H4 |
C7 |
C10 |
H9 |
65.1 |
185.4 |
| H5 |
C8 |
C7 |
C10 |
346.3 |
357.2 |
| H5 |
C8 |
C7 |
H4 |
225.1 |
236.2 |
| C6 |
C9 |
H6 |
C8 |
112.9 |
112.7 |
| H6 |
C9 |
C6 |
H3 |
155.9 |
160.2 |
| H6 |
C9 |
C8 |
H5 |
348.0 |
338.6 |
| H7 |
O2 |
C9 |
H6 |
57.2 |
56.3 |
| H8 |
O3 |
C8 |
H5 |
57.0 |
302.6 |
| C7 |
C10 |
H10 |
N5 |
237.5 |
240.0 |
| H10 |
C10 |
C7 |
H4 |
305.9 |
65.4 |
| C7 |
C10 |
H10 |
H9 |
118.8 |
120.0 |
| H10 |
C10 |
N5 |
C11 |
30.3 |
60.0 |
| N5 |
C10 |
H10 |
H9 |
241.3 |
240.0 |
| H10 |
C10 |
N5 |
H11 |
150.7 |
184.0 |
| C7 |
C10 |
H9 |
N5 |
122.5 |
120.0 |
| H9 |
C10 |
C7 |
H4 |
65.1 |
185.4 |
| C7 |
C10 |
H9 |
H10 |
241.2 |
240.0 |
| H9 |
C10 |
N5 |
C11 |
271.1 |
300.0 |
| N5 |
C10 |
H9 |
H10 |
118.7 |
119.9 |
| H9 |
C10 |
N5 |
H11 |
31.6 |
64.0 |
| C10 |
N5 |
H11 |
C11 |
237.3 |
236.0 |
| H11 |
N5 |
C10 |
H10 |
150.7 |
184.0 |
| H11 |
N5 |
C10 |
H9 |
31.6 |
64.0 |
| H11 |
N5 |
C11 |
C12 |
325.3 |
56.0 |
| H11 |
N5 |
C11 |
H12 |
85.9 |
176.0 |
| H11 |
N5 |
C11 |
H13 |
204.8 |
296.0 |
| N5 |
C11 |
H12 |
C12 |
236.7 |
240.0 |
| H12 |
C11 |
N5 |
H11 |
85.9 |
176.0 |
| N5 |
C11 |
H12 |
H13 |
118.4 |
120.0 |
| H12 |
C11 |
C12 |
C15 |
346.8 |
335.0 |
| C12 |
C11 |
H12 |
H13 |
241.6 |
240.0 |
| N5 |
C11 |
H13 |
C12 |
123.3 |
120.0 |
| H13 |
C11 |
N5 |
H11 |
204.8 |
296.0 |
| N5 |
C11 |
H13 |
H12 |
241.6 |
240.0 |
| H13 |
C11 |
C12 |
C15 |
227.8 |
215.0 |
| C12 |
C11 |
H13 |
H12 |
118.4 |
120.0 |
| C1 |
N6 |
H14 |
H15 |
120.0 |
180.0 |
| C1 |
N6 |
H15 |
H14 |
240.0 |
180.0 |
| C12 |
C15 |
H16 |
N8 |
180.0 |
179.7 |
| H16 |
C15 |
N8 |
C16 |
2.9 |
360.0 |
| N8 |
C16 |
H20 |
O4 |
237.5 |
240.0 |
| N8 |
C16 |
H20 |
H19 |
118.7 |
120.0 |
| H20 |
C16 |
O4 |
C17 |
89.9 |
320.1 |
| O4 |
C16 |
H20 |
H19 |
241.3 |
239.9 |
| N8 |
C16 |
H19 |
O4 |
122.5 |
120.0 |
| N8 |
C16 |
H19 |
H20 |
241.3 |
240.0 |
| H19 |
C16 |
O4 |
C17 |
330.7 |
200.0 |
| O4 |
C16 |
H19 |
H20 |
118.7 |
120.0 |
| O4 |
C17 |
H22 |
H23 |
120.0 |
120.0 |
| O4 |
C17 |
H22 |
H21 |
240.0 |
240.0 |
| H23 |
C17 |
H22 |
H21 |
120.0 |
120.0 |
| O4 |
C17 |
H23 |
H22 |
240.0 |
240.0 |
| O4 |
C17 |
H23 |
H21 |
120.0 |
120.1 |
| H22 |
C17 |
H23 |
H21 |
240.0 |
240.0 |
| O4 |
C17 |
H21 |
H22 |
120.0 |
120.0 |
| O4 |
C17 |
H21 |
H23 |
240.0 |
240.0 |
| H22 |
C17 |
H21 |
H23 |
120.0 |
120.0 |