PDB Chemical Component LGP

Ideal Model

Chemical Description

Name N9-1-HYDROXY-PROP-2-OXYMETHYL-GUANINE-3'-MONOPHOSPHATE
Synonyms LINEAR DECARBON-C2* GUANOSINE-5'-MONOPHOSPHATE
Formula C9 H14 N5 O7 P
Formal charge 0
Molecular weight 335.211 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 36
Chiral atom count 1
Chiral atoms C4'
Observed leaving atoms OP3 HO3'
Bond count 37
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) (2S)-2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)methoxy]-3-hydroxypropyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(2S)-2-[(2-amino-6-oxo-1H-purin-9-yl)methoxy]-3-hydroxy-propyl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(CO[C@@H](CO)CO[P](O)(O)=O)cnc2C(=O)N1
SMILES (CACTVS) NC1=Nc2n(CO[CH](CO)CO[P](O)(O)=O)cnc2C(=O)N1
Stereo SMILES (OpenEye) c1nc2c(n1CO[C@@H](CO)COP(=O)(O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C9H14N5O7P/c10-9-12-7-6(8(16)13-9)11-3-14(7)4-20-5(1-15)2-21-22(17,18)19/h3,5,15H,1-2,4H2,(H2,17,18,19)(H3,10,12,13,16)/t5-/m0/s1
InChIKey descriptor LSJIZCGOXSEZNF-YFKPBYRVSA-N

Status Information

Last modified 2020-06-17
Created 1999-07-08
Release status REL
Model PDB code 1AC9
Processing site RCSB