Atom Nomenclature for LG0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LG0

Atom Name (V3) Atom Name (V2)
C13 C13
C18 C18
C17 C17
C16 C16
C15 C15
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C11 C11
C12 C12
C27 C27
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
N1 N1
N6 N6
N5 N5
C7 C7
C44 C44
C14 C14
C8 C8
C10 C10
O3 O3
F1 F1
F2 F2
F3 F3
O1 O1
C9 C9
N2 N2
C25 C25
C29 C29
C30 C30
H18 H18
H15 H15
H15A H15A
H15B H15B
H19 H19
H19A H19A
H20 H20
H20A H20A
H21 H21
H21A H21A
H22 H22
H23 H23
H23A H23A
H27 H27
H27A H27A
H2 H2
H3 H3
H5 H5
H6 H6
H44 H44
H14 H14
H9 H9
H9A H9A
H25 H25
H25A H25A
H29 H29
H29A H29A
H30 H30
H30A H30A