PDB Chemical Component LEF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LEF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CD1 |
CG |
1.521 |
1.530 |
CD1 |
F1 |
1.284 |
1.398 |
CD1 |
HD12 |
1.100 |
1.089 |
CD1 |
HD13 |
1.100 |
1.090 |
CD2 |
CG |
1.524 |
1.530 |
CD2 |
HD21 |
1.100 |
1.090 |
CD2 |
HD22 |
1.100 |
1.090 |
CD2 |
HD23 |
1.100 |
1.090 |
CG |
CB |
1.545 |
1.529 |
CG |
HG |
1.100 |
1.090 |
CB |
CA |
1.539 |
1.528 |
CB |
HB3 |
1.100 |
1.090 |
CB |
HB2 |
1.101 |
1.089 |
N |
CA |
1.454 |
1.469 |
N |
H |
1.030 |
1.008 |
N |
H2 |
1.030 |
1.010 |
CA |
C |
1.523 |
1.507 |
CA |
HA |
1.100 |
1.089 |
C |
O |
1.229 |
1.207 |
C |
OXT |
1.323 |
1.342 |
OXT |
HXT |
0.949 |
0.967 |
Bond Angles for LEF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CG |
CD1 |
F1 |
113.1 |
109.5 |
CG |
CD1 |
HD12 |
108.5 |
109.5 |
CG |
CD1 |
HD13 |
107.3 |
109.4 |
CD1 |
CG |
CD2 |
110.5 |
109.5 |
CD1 |
CG |
CB |
111.9 |
109.6 |
CD1 |
CG |
HG |
107.7 |
109.4 |
F1 |
CD1 |
HD12 |
108.5 |
109.5 |
F1 |
CD1 |
HD13 |
107.3 |
109.5 |
HD12 |
CD1 |
HD13 |
112.0 |
109.4 |
CG |
CD2 |
HD21 |
109.5 |
109.5 |
CG |
CD2 |
HD22 |
109.5 |
109.5 |
CG |
CD2 |
HD23 |
109.5 |
109.5 |
CD2 |
CG |
CB |
111.3 |
109.5 |
CD2 |
CG |
HG |
108.3 |
109.5 |
HD21 |
CD2 |
HD22 |
109.5 |
109.5 |
HD21 |
CD2 |
HD23 |
109.5 |
109.4 |
HD22 |
CD2 |
HD23 |
109.5 |
109.5 |
CB |
CG |
HG |
106.9 |
109.5 |
CG |
CB |
CA |
111.6 |
109.5 |
CG |
CB |
HB3 |
109.0 |
109.4 |
CG |
CB |
HB2 |
108.3 |
109.4 |
CA |
CB |
HB3 |
108.9 |
109.5 |
CA |
CB |
HB2 |
108.2 |
109.5 |
CB |
CA |
N |
108.8 |
109.5 |
CB |
CA |
C |
111.4 |
109.5 |
CB |
CA |
HA |
109.9 |
109.5 |
HB3 |
CB |
HB2 |
110.9 |
109.4 |
CA |
N |
H |
109.5 |
106.7 |
CA |
N |
H2 |
109.4 |
106.7 |
N |
CA |
C |
112.9 |
109.4 |
N |
CA |
HA |
108.3 |
109.4 |
H |
N |
H2 |
109.4 |
106.7 |
C |
CA |
HA |
105.5 |
109.5 |
CA |
C |
O |
121.7 |
120.0 |
CA |
C |
OXT |
115.3 |
120.0 |
O |
C |
OXT |
123.0 |
120.0 |
C |
OXT |
HXT |
115.3 |
120.0 |
Torsion Angles for LEF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
F1 |
CD1 |
CG |
HD12 |
239.5 |
239.9 |
F1 |
CD1 |
CG |
HD13 |
118.2 |
120.0 |
HD12 |
CD1 |
CG |
HD13 |
238.7 |
240.1 |
CD1 |
CG |
CD2 |
HD21 |
88.1 |
60.0 |
CD1 |
CG |
CD2 |
HD22 |
208.1 |
180.1 |
CD1 |
CG |
CD2 |
HD23 |
328.1 |
300.1 |
CD2 |
CG |
CD1 |
CB |
235.3 |
240.0 |
CD2 |
CG |
CD1 |
HG |
118.2 |
120.0 |
CB |
CG |
CD1 |
HG |
242.8 |
240.0 |
CD1 |
CG |
CB |
CA |
193.2 |
180.0 |
CD1 |
CG |
CB |
HB3 |
72.9 |
300.0 |
CD1 |
CG |
CB |
HB2 |
312.2 |
59.9 |
CG |
CD1 |
F1 |
HD12 |
120.5 |
120.1 |
CG |
CD1 |
F1 |
HD13 |
241.8 |
240.0 |
F1 |
CD1 |
CG |
CD2 |
186.5 |
59.9 |
F1 |
CD1 |
CG |
CB |
311.2 |
180.0 |
F1 |
CD1 |
CG |
HG |
68.3 |
300.0 |
HD12 |
CD1 |
F1 |
HD13 |
121.2 |
120.0 |
CG |
CD1 |
HD12 |
F1 |
236.7 |
239.9 |
CG |
CD1 |
HD12 |
HD13 |
118.3 |
119.9 |
HD12 |
CD1 |
CG |
CD2 |
307.0 |
180.0 |
HD12 |
CD1 |
CG |
CB |
71.7 |
300.1 |
HD12 |
CD1 |
CG |
HG |
188.9 |
60.1 |
F1 |
CD1 |
HD12 |
HD13 |
241.7 |
240.0 |
CG |
CD1 |
HD13 |
F1 |
121.9 |
120.0 |
CG |
CD1 |
HD13 |
HD12 |
240.9 |
240.1 |
HD13 |
CD1 |
CG |
CD2 |
68.3 |
300.0 |
HD13 |
CD1 |
CG |
CB |
193.0 |
60.0 |
HD13 |
CD1 |
CG |
HG |
310.1 |
180.0 |
F1 |
CD1 |
HD13 |
HD12 |
119.0 |
120.0 |
CD2 |
CG |
CD1 |
F1 |
186.5 |
59.9 |
CD2 |
CG |
CD1 |
HD12 |
307.0 |
180.0 |
CD2 |
CG |
CD1 |
HD13 |
68.3 |
300.0 |
CD1 |
CG |
CD2 |
CB |
125.0 |
120.1 |
CD1 |
CG |
CD2 |
HG |
242.2 |
240.1 |
HD21 |
CD2 |
CG |
HD22 |
240.0 |
239.9 |
HD21 |
CD2 |
CG |
HD23 |
120.0 |
119.9 |
HD22 |
CD2 |
CG |
HD23 |
240.0 |
240.0 |
CB |
CG |
CD2 |
HG |
117.2 |
120.0 |
CD2 |
CG |
CB |
CA |
317.4 |
300.0 |
CD2 |
CG |
CB |
HB3 |
197.1 |
60.0 |
CD2 |
CG |
CB |
HB2 |
76.4 |
179.9 |
CG |
CD2 |
HD21 |
HD22 |
120.0 |
120.0 |
CG |
CD2 |
HD21 |
HD23 |
240.0 |
240.0 |
HD21 |
CD2 |
CG |
CB |
323.1 |
299.9 |
HD21 |
CD2 |
CG |
HG |
205.9 |
179.9 |
HD22 |
CD2 |
HD21 |
HD23 |
120.0 |
120.0 |
CG |
CD2 |
HD22 |
HD21 |
240.0 |
240.0 |
CG |
CD2 |
HD22 |
HD23 |
120.0 |
120.0 |
HD22 |
CD2 |
CG |
CB |
83.1 |
60.0 |
HD22 |
CD2 |
CG |
HG |
325.9 |
300.0 |
HD21 |
CD2 |
HD22 |
HD23 |
240.0 |
240.0 |
CG |
CD2 |
HD23 |
HD21 |
120.0 |
120.0 |
CG |
CD2 |
HD23 |
HD22 |
240.0 |
240.0 |
HD23 |
CD2 |
CG |
CB |
203.1 |
180.0 |
HD23 |
CD2 |
CG |
HG |
85.9 |
60.0 |
HD21 |
CD2 |
HD23 |
HD22 |
120.0 |
120.0 |
CB |
CG |
CD1 |
F1 |
311.2 |
180.0 |
CB |
CG |
CD1 |
HD12 |
71.7 |
300.1 |
CB |
CG |
CD1 |
HD13 |
193.0 |
60.0 |
CD1 |
CG |
CB |
CD2 |
235.8 |
240.0 |
CD1 |
CG |
CB |
HG |
117.7 |
120.0 |
CB |
CG |
CD2 |
HD21 |
323.1 |
299.9 |
CB |
CG |
CD2 |
HD22 |
83.1 |
60.0 |
CB |
CG |
CD2 |
HD23 |
203.1 |
180.0 |
CD2 |
CG |
CB |
HG |
241.9 |
240.0 |
CA |
CB |
CG |
HB3 |
120.3 |
240.0 |
CA |
CB |
CG |
HB2 |
241.0 |
120.1 |
CG |
CB |
CA |
N |
308.1 |
300.0 |
CG |
CB |
CA |
C |
183.1 |
180.0 |
CG |
CB |
CA |
HA |
66.5 |
59.9 |
HB3 |
CB |
CG |
HB2 |
120.7 |
240.1 |
HG |
CG |
CD1 |
F1 |
68.3 |
300.0 |
HG |
CG |
CD1 |
HD12 |
188.9 |
60.1 |
HG |
CG |
CD1 |
HD13 |
310.1 |
180.0 |
CD1 |
CG |
HG |
CD2 |
119.6 |
119.9 |
CD1 |
CG |
HG |
CB |
239.6 |
239.9 |
HG |
CG |
CD2 |
HD21 |
205.9 |
179.9 |
HG |
CG |
CD2 |
HD22 |
325.9 |
300.0 |
HG |
CG |
CD2 |
HD23 |
85.9 |
60.0 |
CD2 |
CG |
HG |
CB |
120.0 |
120.0 |
HG |
CG |
CB |
CA |
75.5 |
60.0 |
HG |
CG |
CB |
HB3 |
315.2 |
180.0 |
HG |
CG |
CB |
HB2 |
194.5 |
299.9 |
CA |
CB |
CG |
HG |
75.5 |
60.0 |
CG |
CB |
CA |
HB3 |
239.7 |
120.0 |
CG |
CB |
CA |
HB2 |
119.0 |
240.0 |
HB3 |
CB |
CA |
HB2 |
239.3 |
120.0 |
CB |
CA |
N |
H |
95.1 |
300.0 |
CB |
CA |
N |
H2 |
215.1 |
53.8 |
N |
CA |
CB |
C |
125.1 |
120.0 |
N |
CA |
CB |
HA |
241.6 |
240.1 |
C |
CA |
CB |
HA |
116.5 |
120.1 |
CB |
CA |
C |
O |
74.5 |
89.9 |
CB |
CA |
C |
OXT |
255.1 |
270.0 |
HB3 |
CB |
CG |
HG |
315.2 |
180.0 |
CG |
CB |
HB3 |
CA |
121.9 |
240.0 |
CG |
CB |
HB3 |
HB2 |
241.0 |
119.9 |
CA |
CB |
HB3 |
HB2 |
119.0 |
239.9 |
HB3 |
CB |
CA |
N |
68.5 |
180.0 |
HB3 |
CB |
CA |
C |
303.4 |
60.1 |
HB3 |
CB |
CA |
HA |
186.9 |
300.0 |
HB2 |
CB |
CG |
HG |
194.5 |
299.9 |
CG |
CB |
HB2 |
CA |
238.9 |
120.1 |
CG |
CB |
HB2 |
HB3 |
119.5 |
240.1 |
CA |
CB |
HB2 |
HB3 |
240.6 |
120.0 |
HB2 |
CB |
CA |
N |
189.1 |
60.0 |
HB2 |
CB |
CA |
C |
64.1 |
300.1 |
HB2 |
CB |
CA |
HA |
307.5 |
180.0 |
N |
CA |
CB |
HB3 |
68.5 |
180.0 |
N |
CA |
CB |
HB2 |
189.1 |
60.0 |
CB |
CA |
N |
C |
235.8 |
240.0 |
CB |
CA |
N |
HA |
119.4 |
120.0 |
H |
N |
CA |
H2 |
240.0 |
246.2 |
C |
CA |
N |
HA |
243.6 |
240.0 |
N |
CA |
C |
O |
311.8 |
329.9 |
N |
CA |
C |
OXT |
132.3 |
150.0 |
CA |
N |
H |
H2 |
120.0 |
113.8 |
H |
N |
CA |
C |
219.3 |
60.0 |
H |
N |
CA |
HA |
335.7 |
180.0 |
CA |
N |
H2 |
H |
240.0 |
246.2 |
H2 |
N |
CA |
C |
339.2 |
173.8 |
H2 |
N |
CA |
HA |
95.7 |
293.8 |
C |
CA |
CB |
HB3 |
303.4 |
60.1 |
C |
CA |
CB |
HB2 |
64.1 |
300.1 |
CB |
CA |
C |
N |
122.7 |
120.0 |
CB |
CA |
C |
HA |
240.8 |
239.9 |
C |
CA |
N |
H |
219.3 |
60.0 |
C |
CA |
N |
H2 |
339.2 |
173.8 |
N |
CA |
C |
HA |
118.1 |
119.9 |
O |
C |
CA |
OXT |
179.5 |
179.9 |
CA |
C |
OXT |
HXT |
180.0 |
180.0 |
HA |
CA |
CB |
HB3 |
186.9 |
300.0 |
HA |
CA |
CB |
HB2 |
307.5 |
180.0 |
CB |
CA |
HA |
N |
241.3 |
240.0 |
CB |
CA |
HA |
C |
120.2 |
120.1 |
HA |
CA |
N |
H |
335.7 |
180.0 |
HA |
CA |
N |
H2 |
95.7 |
293.8 |
N |
CA |
HA |
C |
238.9 |
240.1 |
HA |
CA |
C |
O |
193.7 |
210.0 |
HA |
CA |
C |
OXT |
14.2 |
30.1 |
O |
C |
CA |
HA |
193.7 |
210.0 |
CA |
C |
O |
OXT |
180.6 |
180.1 |
O |
C |
OXT |
HXT |
0.5 |
0.1 |
OXT |
C |
CA |
HA |
14.2 |
30.1 |
CA |
C |
OXT |
O |
179.5 |
179.9 |