PDB Chemical Component LEF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LEF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CD1 CG 1.521 1.530
CD1 F1 1.284 1.398
CD1 HD12 1.100 1.089
CD1 HD13 1.100 1.090
CD2 CG 1.524 1.530
CD2 HD21 1.100 1.090
CD2 HD22 1.100 1.090
CD2 HD23 1.100 1.090
CG CB 1.545 1.529
CG HG 1.100 1.090
CB CA 1.539 1.528
CB HB3 1.100 1.090
CB HB2 1.101 1.089
N CA 1.454 1.469
N H 1.030 1.008
N H2 1.030 1.010
CA C 1.523 1.507
CA HA 1.100 1.089
C O 1.229 1.207
C OXT 1.323 1.342
OXT HXT 0.949 0.967

Bond Angles for LEF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CG CD1 F1 113.1 109.5
CG CD1 HD12 108.5 109.5
CG CD1 HD13 107.3 109.4
CD1 CG CD2 110.5 109.5
CD1 CG CB 111.9 109.6
CD1 CG HG 107.7 109.4
F1 CD1 HD12 108.5 109.5
F1 CD1 HD13 107.3 109.5
HD12 CD1 HD13 112.0 109.4
CG CD2 HD21 109.5 109.5
CG CD2 HD22 109.5 109.5
CG CD2 HD23 109.5 109.5
CD2 CG CB 111.3 109.5
CD2 CG HG 108.3 109.5
HD21 CD2 HD22 109.5 109.5
HD21 CD2 HD23 109.5 109.4
HD22 CD2 HD23 109.5 109.5
CB CG HG 106.9 109.5
CG CB CA 111.6 109.5
CG CB HB3 109.0 109.4
CG CB HB2 108.3 109.4
CA CB HB3 108.9 109.5
CA CB HB2 108.2 109.5
CB CA N 108.8 109.5
CB CA C 111.4 109.5
CB CA HA 109.9 109.5
HB3 CB HB2 110.9 109.4
CA N H 109.5 106.7
CA N H2 109.4 106.7
N CA C 112.9 109.4
N CA HA 108.3 109.4
H N H2 109.4 106.7
C CA HA 105.5 109.5
CA C O 121.7 120.0
CA C OXT 115.3 120.0
O C OXT 123.0 120.0
C OXT HXT 115.3 120.0

Torsion Angles for LEF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
F1 CD1 CG HD12 239.5 239.9
F1 CD1 CG HD13 118.2 120.0
HD12 CD1 CG HD13 238.7 240.1
CD1 CG CD2 HD21 88.1 60.0
CD1 CG CD2 HD22 208.1 180.1
CD1 CG CD2 HD23 328.1 300.1
CD2 CG CD1 CB 235.3 240.0
CD2 CG CD1 HG 118.2 120.0
CB CG CD1 HG 242.8 240.0
CD1 CG CB CA 193.2 180.0
CD1 CG CB HB3 72.9 300.0
CD1 CG CB HB2 312.2 59.9
CG CD1 F1 HD12 120.5 120.1
CG CD1 F1 HD13 241.8 240.0
F1 CD1 CG CD2 186.5 59.9
F1 CD1 CG CB 311.2 180.0
F1 CD1 CG HG 68.3 300.0
HD12 CD1 F1 HD13 121.2 120.0
CG CD1 HD12 F1 236.7 239.9
CG CD1 HD12 HD13 118.3 119.9
HD12 CD1 CG CD2 307.0 180.0
HD12 CD1 CG CB 71.7 300.1
HD12 CD1 CG HG 188.9 60.1
F1 CD1 HD12 HD13 241.7 240.0
CG CD1 HD13 F1 121.9 120.0
CG CD1 HD13 HD12 240.9 240.1
HD13 CD1 CG CD2 68.3 300.0
HD13 CD1 CG CB 193.0 60.0
HD13 CD1 CG HG 310.1 180.0
F1 CD1 HD13 HD12 119.0 120.0
CD2 CG CD1 F1 186.5 59.9
CD2 CG CD1 HD12 307.0 180.0
CD2 CG CD1 HD13 68.3 300.0
CD1 CG CD2 CB 125.0 120.1
CD1 CG CD2 HG 242.2 240.1
HD21 CD2 CG HD22 240.0 239.9
HD21 CD2 CG HD23 120.0 119.9
HD22 CD2 CG HD23 240.0 240.0
CB CG CD2 HG 117.2 120.0
CD2 CG CB CA 317.4 300.0
CD2 CG CB HB3 197.1 60.0
CD2 CG CB HB2 76.4 179.9
CG CD2 HD21 HD22 120.0 120.0
CG CD2 HD21 HD23 240.0 240.0
HD21 CD2 CG CB 323.1 299.9
HD21 CD2 CG HG 205.9 179.9
HD22 CD2 HD21 HD23 120.0 120.0
CG CD2 HD22 HD21 240.0 240.0
CG CD2 HD22 HD23 120.0 120.0
HD22 CD2 CG CB 83.1 60.0
HD22 CD2 CG HG 325.9 300.0
HD21 CD2 HD22 HD23 240.0 240.0
CG CD2 HD23 HD21 120.0 120.0
CG CD2 HD23 HD22 240.0 240.0
HD23 CD2 CG CB 203.1 180.0
HD23 CD2 CG HG 85.9 60.0
HD21 CD2 HD23 HD22 120.0 120.0
CB CG CD1 F1 311.2 180.0
CB CG CD1 HD12 71.7 300.1
CB CG CD1 HD13 193.0 60.0
CD1 CG CB CD2 235.8 240.0
CD1 CG CB HG 117.7 120.0
CB CG CD2 HD21 323.1 299.9
CB CG CD2 HD22 83.1 60.0
CB CG CD2 HD23 203.1 180.0
CD2 CG CB HG 241.9 240.0
CA CB CG HB3 120.3 240.0
CA CB CG HB2 241.0 120.1
CG CB CA N 308.1 300.0
CG CB CA C 183.1 180.0
CG CB CA HA 66.5 59.9
HB3 CB CG HB2 120.7 240.1
HG CG CD1 F1 68.3 300.0
HG CG CD1 HD12 188.9 60.1
HG CG CD1 HD13 310.1 180.0
CD1 CG HG CD2 119.6 119.9
CD1 CG HG CB 239.6 239.9
HG CG CD2 HD21 205.9 179.9
HG CG CD2 HD22 325.9 300.0
HG CG CD2 HD23 85.9 60.0
CD2 CG HG CB 120.0 120.0
HG CG CB CA 75.5 60.0
HG CG CB HB3 315.2 180.0
HG CG CB HB2 194.5 299.9
CA CB CG HG 75.5 60.0
CG CB CA HB3 239.7 120.0
CG CB CA HB2 119.0 240.0
HB3 CB CA HB2 239.3 120.0
CB CA N H 95.1 300.0
CB CA N H2 215.1 53.8
N CA CB C 125.1 120.0
N CA CB HA 241.6 240.1
C CA CB HA 116.5 120.1
CB CA C O 74.5 89.9
CB CA C OXT 255.1 270.0
HB3 CB CG HG 315.2 180.0
CG CB HB3 CA 121.9 240.0
CG CB HB3 HB2 241.0 119.9
CA CB HB3 HB2 119.0 239.9
HB3 CB CA N 68.5 180.0
HB3 CB CA C 303.4 60.1
HB3 CB CA HA 186.9 300.0
HB2 CB CG HG 194.5 299.9
CG CB HB2 CA 238.9 120.1
CG CB HB2 HB3 119.5 240.1
CA CB HB2 HB3 240.6 120.0
HB2 CB CA N 189.1 60.0
HB2 CB CA C 64.1 300.1
HB2 CB CA HA 307.5 180.0
N CA CB HB3 68.5 180.0
N CA CB HB2 189.1 60.0
CB CA N C 235.8 240.0
CB CA N HA 119.4 120.0
H N CA H2 240.0 246.2
C CA N HA 243.6 240.0
N CA C O 311.8 329.9
N CA C OXT 132.3 150.0
CA N H H2 120.0 113.8
H N CA C 219.3 60.0
H N CA HA 335.7 180.0
CA N H2 H 240.0 246.2
H2 N CA C 339.2 173.8
H2 N CA HA 95.7 293.8
C CA CB HB3 303.4 60.1
C CA CB HB2 64.1 300.1
CB CA C N 122.7 120.0
CB CA C HA 240.8 239.9
C CA N H 219.3 60.0
C CA N H2 339.2 173.8
N CA C HA 118.1 119.9
O C CA OXT 179.5 179.9
CA C OXT HXT 180.0 180.0
HA CA CB HB3 186.9 300.0
HA CA CB HB2 307.5 180.0
CB CA HA N 241.3 240.0
CB CA HA C 120.2 120.1
HA CA N H 335.7 180.0
HA CA N H2 95.7 293.8
N CA HA C 238.9 240.1
HA CA C O 193.7 210.0
HA CA C OXT 14.2 30.1
O C CA HA 193.7 210.0
CA C O OXT 180.6 180.1
O C OXT HXT 0.5 0.1
OXT C CA HA 14.2 30.1
CA C OXT O 179.5 179.9