PDB Chemical Component LEE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LEE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.434 1.469
N H 1.000 1.009
N H2 1.000 1.009
CA C 1.532 1.507
CA CB 1.491 1.530
CA HA 1.100 1.091
C O 1.225 1.208
C OXT 1.240 1.343
CB CG 1.485 1.530
CB HB2 1.099 1.090
CB HB3 1.100 1.090
CG CD 1.486 1.507
CG HG2 1.100 1.089
CG HG3 1.101 1.090
CD OE1 1.240 1.214
OXT HXT 0.950 0.967
N1 CA1 1.468 1.465
N1 H1 1.000 0.970
CA1 CB1 1.546 1.530
CA1 C7 1.535 1.507
CA1 HA1 1.100 1.091
CB1 SG 1.788 1.813
CB1 HB21 1.100 1.090
CB1 HB31 1.100 1.091
SG C1 1.813 1.814
C1 C2 1.542 1.530
C1 H11 1.100 1.090
C1 H12 1.100 1.090
C2 C3 1.535 1.530
C2 H21 1.100 1.091
C2 H22 1.100 1.090
C3 C4 1.551 1.530
C3 H31 1.100 1.090
C3 H32 1.100 1.090
C4 C5 1.545 1.530
C4 H41 1.100 1.091
C4 H42 1.100 1.090
C5 C6 1.543 1.530
C5 H51 1.100 1.090
C5 H52 1.100 1.090
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C6 H63 1.100 1.090
C7 O1 1.227 1.213
N2 CA2 1.472 1.465
N2 H3 1.000 0.970
CA2 C8 1.527 1.507
CA2 HA2 1.100 1.091
CA2 HA3 1.100 1.090
C8 O2 1.233 1.208
C8 OXT1 1.236 1.342
OXT1 HXT1 0.950 0.967
CD N1 1.323 1.347
C7 N2 1.316 1.347

Bond Angles for LEE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 111.0
CA N H2 109.4 111.0
N CA C 100.5 109.5
N CA CB 107.0 109.5
N CA HA 117.9 109.5
H N H2 109.5 111.0
C CA CB 113.4 109.5
C CA HA 112.0 109.4
CA C O 120.7 120.0
CA C OXT 118.8 120.0
CB CA HA 106.1 109.5
CA CB CG 114.3 109.4
CA CB HB2 107.9 109.5
CA CB HB3 107.9 109.5
O C OXT 120.5 120.0
C OXT HXT 109.5 117.0
CG CB HB2 107.9 109.5
CG CB HB3 107.9 109.5
CB CG CD 105.3 109.5
CB CG HG2 110.9 109.5
CB CG HG3 110.9 109.4
HB2 CB HB3 111.0 109.5
CD CG HG2 110.9 109.5
CD CG HG3 110.9 109.4
CG CD OE1 122.4 120.0
CG CD N1 103.2 120.0
HG2 CG HG3 108.0 109.5
OE1 CD N1 133.4 120.0
CA1 N1 H1 119.7 119.9
N1 CA1 CB1 99.0 109.5
N1 CA1 C7 105.6 109.5
N1 CA1 HA1 122.2 109.4
CD N1 CA1 120.7 120.0
CD N1 H1 119.6 120.0
CB1 CA1 C7 119.6 109.5
CB1 CA1 HA1 108.9 109.4
CA1 CB1 SG 100.3 109.5
CA1 CB1 HB21 112.7 109.4
CA1 CB1 HB31 112.7 109.4
C7 CA1 HA1 102.8 109.5
CA1 C7 O1 118.2 120.0
CA1 C7 N2 128.4 120.0
SG CB1 HB21 112.6 109.5
SG CB1 HB31 112.6 109.5
CB1 SG C1 107.8 103.0
HB21 CB1 HB31 106.1 109.4
SG C1 C2 108.3 109.5
SG C1 H11 109.9 109.5
SG C1 H12 109.9 109.5
C2 C1 H11 109.9 109.4
C2 C1 H12 109.9 109.5
C1 C2 C3 114.0 109.5
C1 C2 H21 108.0 109.5
C1 C2 H22 108.0 109.5
H11 C1 H12 109.1 109.5
C3 C2 H21 108.0 109.4
C3 C2 H22 108.0 109.5
C2 C3 C4 117.7 109.5
C2 C3 H31 106.8 109.4
C2 C3 H32 106.8 109.5
H21 C2 H22 110.9 109.5
C4 C3 H31 106.8 109.5
C4 C3 H32 106.8 109.5
C3 C4 C5 114.2 109.5
C3 C4 H41 107.9 109.4
C3 C4 H42 107.9 109.5
H31 C3 H32 112.0 109.5
C5 C4 H41 107.9 109.5
C5 C4 H42 107.9 109.5
C4 C5 C6 114.7 109.4
C4 C5 H51 107.8 109.4
C4 C5 H52 107.8 109.5
H41 C4 H42 111.0 109.5
C6 C5 H51 107.7 109.5
C6 C5 H52 107.8 109.5
C5 C6 H61 109.5 109.5
C5 C6 H62 109.4 109.5
C5 C6 H63 109.5 109.4
H51 C5 H52 111.1 109.5
H61 C6 H62 109.5 109.5
H61 C6 H63 109.5 109.4
H62 C6 H63 109.5 109.5
O1 C7 N2 113.4 120.0
CA2 N2 H3 119.3 120.0
N2 CA2 C8 112.3 109.5
N2 CA2 HA2 108.5 109.5
N2 CA2 HA3 108.6 109.5
C7 N2 CA2 121.4 120.0
C7 N2 H3 119.3 120.0
C8 CA2 HA2 108.6 109.5
C8 CA2 HA3 108.5 109.5
CA2 C8 O2 118.4 120.0
CA2 C8 OXT1 117.9 120.0
HA2 CA2 HA3 110.4 109.4
O2 C8 OXT1 123.7 120.0
C8 OXT1 HXT1 109.5 117.0

Torsion Angles for LEE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 240.0 236.1
C CA N CB 118.6 120.0
C CA N HA 238.0 240.0
N CA C O 215.1 340.0
N CA C OXT 33.5 160.0
CB CA N HA 119.3 120.0
N CA CB CG 195.3 295.0
N CA CB HB2 315.3 55.0
N CA CB HB3 75.3 175.0
CA N H H2 120.0 123.9
H N CA C 180.0 296.1
H N CA CB 61.3 176.1
H N CA HA 302.0 56.0
CA N H2 H 240.0 236.1
H2 N CA C 300.0 60.0
H2 N CA CB 181.4 300.0
H2 N CA HA 62.0 180.0
C CA N H 180.0 296.1
C CA N H2 300.0 60.0
N CA C CB 246.1 240.0
N CA C HA 126.1 120.0
CB CA C HA 239.9 240.0
C CA CB CG 85.4 175.0
C CA CB HB2 205.4 295.0
C CA CB HB3 325.4 55.0
O C CA OXT 181.6 180.0
CA C OXT HXT 181.6 180.0
CB CA N H 61.3 176.1
CB CA N H2 181.4 300.0
N CA CB C 109.9 120.0
N CA CB HA 233.3 239.9
C CA CB HA 123.4 119.9
CB CA C O 329.0 100.0
CB CA C OXT 147.4 280.0
CG CB CA HB2 240.0 240.0
CG CB CA HB3 120.0 120.0
CA CB CG CD 183.6 180.0
CA CB CG HG2 303.6 300.0
CA CB CG HG3 63.6 60.0
HB2 CB CA HB3 240.0 240.0
HA CA N H 302.0 56.0
HA CA N H2 62.0 180.0
N CA HA C 244.1 240.0
N CA HA CB 119.8 120.1
C CA HA CB 235.8 240.0
HA CA C O 89.0 220.0
HA CA C OXT 267.4 40.0
HA CA CB CG 322.0 55.0
HA CA CB HB2 82.0 175.1
HA CA CB HB3 202.0 295.1
O C CA CB 329.0 100.0
O C CA HA 89.0 220.0
CA C O OXT 178.4 180.0
O C OXT HXT 0.0 0.0
OXT C CA CB 147.4 280.0
OXT C CA HA 267.4 40.0
CA C OXT O 181.6 180.0
CG CB CA HA 322.0 55.0
CA CB CG HB2 120.0 120.0
CA CB CG HB3 240.0 240.0
HB2 CB CG HB3 120.0 120.0
CD CG CB HG2 240.0 240.0
CD CG CB HG3 120.0 119.9
CB CG CD OE1 327.4 0.1
CB CG CD N1 157.7 180.0
HG2 CG CB HG3 240.0 240.0
HB2 CB CA HA 82.0 175.1
CA CB HB2 CG 236.0 240.0
CA CB HB2 HB3 118.0 120.0
CG CB HB2 HB3 242.0 240.0
HB2 CB CG CD 63.6 60.0
HB2 CB CG HG2 183.6 180.0
HB2 CB CG HG3 303.6 300.0
HB3 CB CA HA 202.0 295.1
CA CB HB3 CG 124.0 120.0
CA CB HB3 HB2 242.0 240.0
CG CB HB3 HB2 118.0 120.1
HB3 CB CG CD 303.6 299.9
HB3 CB CG HG2 63.6 60.0
HB3 CB CG HG3 183.6 180.0
CD CG CB HB2 63.6 60.0
CD CG CB HB3 303.6 299.9
CB CG CD HG2 120.0 120.0
CB CG CD HG3 240.0 240.1
HG2 CG CD HG3 120.0 120.1
OE1 CD CG N1 169.7 180.1
CG CD N1 CA1 162.9 180.0
CG CD N1 H1 342.9 0.0
HG2 CG CB HB2 183.6 180.0
HG2 CG CB HB3 63.6 60.0
CB CG HG2 CD 243.3 240.0
CB CG HG2 HG3 121.7 120.0
CD CG HG2 HG3 238.3 240.0
HG2 CG CD OE1 207.4 240.0
HG2 CG CD N1 37.7 60.0
HG3 CG CB HB2 303.6 300.0
HG3 CG CB HB3 183.6 180.0
CB CG HG3 CD 116.6 119.9
CB CG HG3 HG2 238.3 240.0
CD CG HG3 HG2 121.7 120.1
HG3 CG CD OE1 87.4 120.0
HG3 CG CD N1 277.8 299.9
OE1 CD CG HG2 207.4 240.0
OE1 CD CG HG3 87.4 120.0
CG CD OE1 N1 193.9 179.9
OE1 CD N1 CA1 354.9 359.9
OE1 CD N1 H1 174.9 180.0
CD N1 CA1 H1 180.0 180.0
CB1 CA1 N1 C7 235.7 239.9
CB1 CA1 N1 HA1 119.2 119.9
N1 CA1 CB1 SG 158.3 300.0
N1 CA1 CB1 HB21 278.2 60.1
N1 CA1 CB1 HB31 38.3 180.0
C7 CA1 N1 HA1 243.5 240.0
N1 CA1 C7 O1 309.0 359.9
N1 CA1 C7 N2 129.2 180.0
H1 N1 CA1 CB1 317.8 335.0
H1 N1 CA1 C7 82.1 95.0
H1 N1 CA1 HA1 198.6 215.0
CD N1 H1 CA1 180.0 180.0
CB1 CA1 N1 H1 317.8 335.0
N1 CA1 CB1 C7 113.8 120.1
N1 CA1 CB1 HA1 231.3 240.1
CD N1 CA1 CB1 137.8 155.0
C7 CA1 CB1 HA1 117.6 120.0
CB1 CA1 C7 O1 59.2 120.0
CB1 CA1 C7 N2 239.5 300.0
SG CB1 CA1 HB21 240.0 240.0
SG CB1 CA1 HB31 120.0 120.0
CA1 CB1 SG C1 143.8 180.0
HB21 CB1 CA1 HB31 240.0 240.1
C7 CA1 N1 H1 82.1 95.0
N1 CA1 C7 CB1 249.8 240.0
N1 CA1 C7 HA1 129.1 120.0
CD N1 CA1 C7 262.1 275.0
CB1 CA1 C7 HA1 239.3 240.0
C7 CA1 CB1 SG 44.5 180.0
C7 CA1 CB1 HB21 164.5 300.0
C7 CA1 CB1 HB31 284.5 59.9
O1 C7 CA1 N2 179.8 179.9
CA1 C7 N2 CA2 127.3 180.0
CA1 C7 N2 H3 307.3 360.0
HA1 CA1 N1 H1 198.6 215.0
N1 CA1 HA1 CB1 114.3 119.9
N1 CA1 HA1 C7 242.1 240.0
CD N1 CA1 HA1 18.6 35.1
CB1 CA1 HA1 C7 127.8 120.0
HA1 CA1 CB1 SG 286.9 60.0
HA1 CA1 CB1 HB21 46.9 180.0
HA1 CA1 CB1 HB31 166.9 299.9
HA1 CA1 C7 O1 179.9 239.9
HA1 CA1 C7 N2 0.2 60.0
SG CB1 CA1 C7 44.5 180.0
SG CB1 CA1 HA1 286.9 60.0
CA1 CB1 SG HB21 120.0 120.0
CA1 CB1 SG HB31 240.0 240.0
HB21 CB1 SG HB31 120.0 120.0
CB1 SG C1 C2 207.5 180.0
CB1 SG C1 H11 327.5 300.0
CB1 SG C1 H12 87.5 60.0
HB21 CB1 CA1 C7 164.5 300.0
HB21 CB1 CA1 HA1 46.9 180.0
CA1 CB1 HB21 SG 247.4 240.0
CA1 CB1 HB21 HB31 123.7 119.9
SG CB1 HB21 HB31 236.3 240.0
HB21 CB1 SG C1 23.8 60.0
HB31 CB1 CA1 C7 284.5 59.9
HB31 CB1 CA1 HA1 166.9 299.9
CA1 CB1 HB31 SG 112.6 120.0
CA1 CB1 HB31 HB21 236.3 240.1
SG CB1 HB31 HB21 123.7 120.0
HB31 CB1 SG C1 263.8 300.0
C1 SG CB1 HB21 23.8 60.0
C1 SG CB1 HB31 263.8 300.0
C2 C1 SG H11 240.0 240.0
C2 C1 SG H12 120.0 120.0
SG C1 C2 C3 291.7 180.0
SG C1 C2 H21 51.7 300.0
SG C1 C2 H22 171.7 60.0
H11 C1 SG H12 240.0 240.0
SG C1 C2 H11 120.0 120.0
SG C1 C2 H12 240.0 240.0
H11 C1 C2 H12 120.0 120.0
C3 C2 C1 H21 240.0 240.0
C3 C2 C1 H22 120.0 120.0
C1 C2 C3 C4 168.3 180.0
C1 C2 C3 H31 288.3 300.0
C1 C2 C3 H32 48.3 60.0
H21 C2 C1 H22 240.0 240.0
SG C1 H11 C2 241.0 240.0
SG C1 H11 H12 120.5 120.0
C2 C1 H11 H12 239.5 240.0
H11 C1 C2 C3 171.6 60.0
H11 C1 C2 H21 291.7 179.9
H11 C1 C2 H22 51.6 300.0
SG C1 H12 C2 119.0 120.0
SG C1 H12 H11 239.5 240.0
C2 C1 H12 H11 120.5 120.0
H12 C1 C2 C3 51.6 300.0
H12 C1 C2 H21 171.7 60.0
H12 C1 C2 H22 291.6 180.0
C3 C2 C1 H11 171.6 60.0
C3 C2 C1 H12 51.6 300.0
C1 C2 C3 H21 120.0 120.0
C1 C2 C3 H22 240.0 240.0
H21 C2 C3 H22 120.0 120.0
C4 C3 C2 H31 240.0 240.0
C4 C3 C2 H32 120.0 120.0
C2 C3 C4 C5 269.3 180.0
C2 C3 C4 H41 29.4 300.0
C2 C3 C4 H42 149.4 60.0
H31 C3 C2 H32 240.0 240.0
H21 C2 C1 H11 291.7 179.9
H21 C2 C1 H12 171.7 60.0
C1 C2 H21 C3 236.3 240.0
C1 C2 H21 H22 118.1 120.0
C3 C2 H21 H22 241.8 240.0
H21 C2 C3 C4 48.3 60.0
H21 C2 C3 H31 168.3 180.0
H21 C2 C3 H32 288.3 300.0
H22 C2 C1 H11 51.6 300.0
H22 C2 C1 H12 291.6 180.0
C1 C2 H22 C3 123.7 120.0
C1 C2 H22 H21 241.9 240.0
C3 C2 H22 H21 118.2 120.0
H22 C2 C3 C4 288.3 300.0
H22 C2 C3 H31 48.3 60.0
H22 C2 C3 H32 168.3 180.0
C4 C3 C2 H21 48.3 60.0
C4 C3 C2 H22 288.3 300.0
C2 C3 C4 H31 120.0 120.0
C2 C3 C4 H32 240.0 240.0
H31 C3 C4 H32 120.0 120.0
C5 C4 C3 H41 240.0 240.0
C5 C4 C3 H42 120.0 120.0
C3 C4 C5 C6 281.3 180.0
C3 C4 C5 H51 41.3 300.0
C3 C4 C5 H52 161.3 60.0
H41 C4 C3 H42 240.0 240.0
H31 C3 C2 H21 168.3 180.0
H31 C3 C2 H22 48.3 60.0
C2 C3 H31 C4 233.2 240.0
C2 C3 H31 H32 116.6 120.0
C4 C3 H31 H32 243.4 240.0
H31 C3 C4 C5 149.3 60.0
H31 C3 C4 H41 269.3 180.0
H31 C3 C4 H42 29.4 300.0
H32 C3 C2 H21 288.3 300.0
H32 C3 C2 H22 168.3 180.0
C2 C3 H32 C4 126.8 120.0
C2 C3 H32 H31 243.4 240.0
C4 C3 H32 H31 116.6 120.0
H32 C3 C4 C5 29.4 300.0
H32 C3 C4 H41 149.4 60.0
H32 C3 C4 H42 269.4 180.0
C5 C4 C3 H31 149.3 60.0
C5 C4 C3 H32 29.4 300.0
C3 C4 C5 H41 120.0 120.0
C3 C4 C5 H42 240.0 240.0
H41 C4 C5 H42 120.0 120.0
C6 C5 C4 H51 240.0 240.0
C6 C5 C4 H52 120.0 120.0
C4 C5 C6 H61 180.0 300.0
C4 C5 C6 H62 300.0 60.0
C4 C5 C6 H63 60.0 180.0
H51 C5 C4 H52 240.0 240.0
H41 C4 C3 H31 269.3 180.0
H41 C4 C3 H32 149.4 60.0
C3 C4 H41 C5 236.1 240.0
C3 C4 H41 H42 118.0 120.0
C5 C4 H41 H42 242.0 240.0
H41 C4 C5 C6 161.3 60.0
H41 C4 C5 H51 281.3 180.0
H41 C4 C5 H52 41.3 300.0
H42 C4 C3 H31 29.4 300.0
H42 C4 C3 H32 269.4 180.0
C3 C4 H42 C5 123.9 120.0
C3 C4 H42 H41 242.0 240.0
C5 C4 H42 H41 118.1 120.0
H42 C4 C5 C6 41.3 300.0
H42 C4 C5 H51 161.2 60.0
H42 C4 C5 H52 281.3 180.0
C6 C5 C4 H41 161.3 60.0
C6 C5 C4 H42 41.3 300.0
C4 C5 C6 H51 120.0 120.0
C4 C5 C6 H52 240.0 240.0
H51 C5 C6 H52 120.0 120.0
H61 C6 C5 H62 240.0 240.0
H61 C6 C5 H63 120.0 120.0
H62 C6 C5 H63 240.0 240.0
H51 C5 C4 H41 281.3 180.0
H51 C5 C4 H42 161.2 60.0
C4 C5 H51 C6 235.7 240.1
C4 C5 H51 H52 117.9 120.0
C6 C5 H51 H52 242.2 240.0
H51 C5 C6 H61 60.0 180.0
H51 C5 C6 H62 180.0 300.0
H51 C5 C6 H63 300.0 60.0
H52 C5 C4 H41 41.3 300.0
H52 C5 C4 H42 281.3 180.0
C4 C5 H52 C6 124.3 120.0
C4 C5 H52 H51 242.1 240.0
C6 C5 H52 H51 117.8 120.0
H52 C5 C6 H61 300.0 60.0
H52 C5 C6 H62 60.0 180.0
H52 C5 C6 H63 180.0 300.0
H61 C6 C5 H51 60.0 180.0
H61 C6 C5 H52 300.0 60.0
C5 C6 H61 H62 120.0 120.0
C5 C6 H61 H63 240.0 240.0
H62 C6 H61 H63 120.0 120.0
H62 C6 C5 H51 180.0 300.0
H62 C6 C5 H52 60.0 180.0
C5 C6 H62 H61 240.0 240.0
C5 C6 H62 H63 120.0 120.0
H61 C6 H62 H63 240.0 240.0
H63 C6 C5 H51 300.0 60.0
H63 C6 C5 H52 180.0 300.0
C5 C6 H63 H61 120.0 120.0
C5 C6 H63 H62 240.0 240.0
H61 C6 H63 H62 120.0 120.0
O1 C7 CA1 HA1 179.9 239.9
CA1 C7 O1 N2 180.2 180.1
O1 C7 N2 CA2 307.5 0.1
O1 C7 N2 H3 127.5 180.0
C7 N2 CA2 H3 180.0 180.0
C8 CA2 N2 HA2 240.0 240.0
C8 CA2 N2 HA3 120.0 120.0
N2 CA2 C8 O2 189.1 0.0
N2 CA2 C8 OXT1 10.9 180.0
HA2 CA2 N2 HA3 240.0 240.0
H3 N2 CA2 C8 308.7 0.0
H3 N2 CA2 HA2 68.7 120.0
H3 N2 CA2 HA3 188.7 240.0
C7 N2 H3 CA2 180.0 180.0
C8 CA2 N2 H3 308.7 0.0
N2 CA2 C8 HA2 120.0 120.0
N2 CA2 C8 HA3 240.0 239.9
C7 N2 CA2 C8 128.7 180.0
HA2 CA2 C8 HA3 120.0 119.9
O2 C8 CA2 OXT1 178.2 180.0
CA2 C8 OXT1 HXT1 178.0 180.0
HA2 CA2 N2 H3 68.7 120.0
N2 CA2 HA2 C8 237.7 240.0
N2 CA2 HA2 HA3 118.9 120.0
C7 N2 CA2 HA2 248.7 300.0
C8 CA2 HA2 HA3 241.2 240.0
HA2 CA2 C8 O2 69.1 240.0
HA2 CA2 C8 OXT1 250.9 60.0
HA3 CA2 N2 H3 188.7 240.0
N2 CA2 HA3 C8 122.3 120.1
N2 CA2 HA3 HA2 241.2 240.0
C7 N2 CA2 HA3 8.7 59.9
C8 CA2 HA3 HA2 118.9 119.9
HA3 CA2 C8 O2 309.1 120.1
HA3 CA2 C8 OXT1 130.9 300.0
O2 C8 CA2 HA2 69.1 240.0
O2 C8 CA2 HA3 309.1 120.1
CA2 C8 O2 OXT1 181.9 180.0
O2 C8 OXT1 HXT1 360.0 359.9
OXT1 C8 CA2 HA2 250.9 60.0
OXT1 C8 CA2 HA3 130.9 300.0
CA2 C8 OXT1 O2 178.1 180.0
N1 CD CG HG2 37.7 60.0
N1 CD CG HG3 277.8 299.9
CG CD N1 OE1 168.0 180.1
CA1 N1 CD H1 180.0 180.0
N2 C7 CA1 HA1 0.2 60.0
CA1 C7 N2 O1 179.8 179.9
CA2 N2 C7 H3 180.0 180.0