PDB Chemical Component LED

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LED

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.482 1.467
N H 1.000 0.994
N H2 1.000 0.994
CA CB 1.535 1.537
CA C 1.524 1.518
CA HA 1.100 1.094
CB CG 1.528 1.540
CB HBC1 1.100 1.099
CB HBC2 1.101 1.099
CG CD1 1.542 1.524
CG CD2 1.548 1.517
CG HG 1.100 1.098
CD1 HD11 1.100 1.095
CD1 HD12 1.100 1.096
CD1 HD13 1.100 1.094
CD2 OE 1.227 1.227
CD2 HD2 1.081 1.105
C O 1.240 1.225
C OXT   1.358
OXT HXT   0.980

Bond Angles for LED

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 117.8
CA N H2 109.5 117.7
N CA CB 108.6 110.0
N CA C 107.2 105.8
N CA HA 111.6 106.8
H N H2 109.5 123.1
CB CA C 109.5 112.0
CB CA HA 109.3 111.5
CA CB CG 113.7 116.5
CA CB HBC1 107.1 109.4
CA CB HBC2 108.1 108.5
C CA HA 110.7 110.5
CA C O 120.6 124.6
CA C OXT   112.7
CG CB HBC1 107.1 108.7
CG CB HBC2 108.1 107.2
CB CG CD1 110.8 113.2
CB CG CD2 108.9 111.3
CB CG HG 108.2 107.0
HBC1 CB HBC2 112.9 106.1
CD1 CG CD2 106.9 112.2
CD1 CG HG 110.2 107.6
CG CD1 HD11 109.4 111.0
CG CD1 HD12 109.5 110.4
CG CD1 HD13 109.5 112.1
CD2 CG HG 112.0 104.8
CG CD2 OE 119.6 124.5
CG CD2 HD2 120.2 115.3
HD11 CD1 HD12 109.5 107.7
HD11 CD1 HD13 109.5 108.4
HD12 CD1 HD13 109.5 106.9
OE CD2 HD2 120.2 120.1
O C OXT   122.6
C OXT HXT   115.8

Torsion Angles for LED

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 120.0 166.6
CB CA N C 241.8 238.9
CB CA N HA 120.5 121.1
N CA CB CG 165.9 301.1
N CA CB HBC1 47.7 177.3
N CA CB HBC2 285.9 62.0
C CA N HA 238.7 242.2
N CA C O 307.3 355.3
N CA C OXT   176.3
CA N H H2 240.0 194.2
H N CA CB 218.8 212.1
H N CA C 337.0 333.2
H N CA HA 98.2 91.0
CA N H2 H 120.0 165.8
H2 N CA CB 98.8 45.5
H2 N CA C 217.0 166.6
H2 N CA HA 338.3 284.4
CB CA N H 218.8 212.1
CB CA N H2 98.8 45.5
N CA CB C 116.7 117.3
N CA CB HA 238.1 241.7
C CA CB HA 121.4 124.4
CB CA C O 64.9 115.1
CB CA C OXT   296.0
CG CB CA HBC1 118.1 123.8
CG CB CA HBC2 240.0 239.0
CA CB CG CD1 60.7 168.3
CA CB CG CD2 177.9 295.9
CA CB CG HG 299.8 49.9
HBC1 CB CA HBC2 121.9 115.3
C CA N H 337.0 333.2
C CA N H2 217.0 166.6
N CA C CB 242.4 240.2
N CA C HA 121.8 115.3
CB CA C HA 239.5 235.1
C CA CB CG 49.2 183.8
C CA CB HBC1 291.0 60.0
C CA CB HBC2 169.2 304.7
O C CA OXT   179.1
CA C OXT HXT   179.0
HA CA N H 98.2 91.0
HA CA N H2 338.3 284.4
N CA HA CB 120.1 120.2
N CA HA C 240.8 245.4
CB CA HA C 120.7 125.3
HA CA CB CG 287.8 59.3
HA CA CB HBC1 169.6 295.6
HA CA CB HBC2 47.8 180.3
HA CA C O 185.5 240.1
HA CA C OXT   61.0
CG CB CA C 49.2 183.8
CG CB CA HA 287.8 59.3
CA CB CG HBC1 241.9 235.8
CA CB CG HBC2 120.0 121.6
HBC1 CB CG HBC2 238.1 245.8
CD1 CG CB CD2 242.7 232.5
CD1 CG CB HG 120.8 118.4
CB CG CD1 HD11 125.3 239.1
CB CG CD1 HD12 5.3 358.5
CB CG CD1 HD13 245.3 117.7
CD2 CG CB HG 238.1 246.0
CB CG CD2 OE 46.0 355.3
CB CG CD2 HD2 226.0 172.6
HBC1 CB CA C 291.0 60.0
HBC1 CB CA HA 169.6 295.6
CA CB HBC1 CG 122.4 128.3
CA CB HBC1 HBC2 241.2 243.2
CG CB HBC1 HBC2 118.8 114.9
HBC1 CB CG CD1 178.8 292.5
HBC1 CB CG CD2 296.0 60.0
HBC1 CB CG HG 58.0 174.1
HBC2 CB CA C 169.2 304.7
HBC2 CB CA HA 47.8 180.3
CA CB HBC2 CG 236.5 233.4
CA CB HBC2 HBC1 118.2 117.5
CG CB HBC2 HBC1 241.7 244.0
HBC2 CB CG CD1 300.7 46.7
HBC2 CB CG CD2 57.9 174.2
HBC2 CB CG HG 179.8 288.3
CD1 CG CB HBC1 178.8 292.5
CD1 CG CB HBC2 300.7 46.7
CB CG CD1 CD2 118.5 127.0
CB CG CD1 HG 240.4 241.9
CD2 CG CD1 HG 121.9 114.8
CD1 CG CD2 OE 165.7 123.4
CD1 CG CD2 HD2 345.7 300.7
HD11 CD1 CG HD12 120.0 240.6
HD11 CD1 CG HD13 240.0 121.4
HD12 CD1 CG HD13 120.0 240.8
CD2 CG CB HBC1 296.0 60.0
CD2 CG CB HBC2 57.9 174.2
CB CG CD2 CD1 240.3 231.9
CB CG CD2 HG 119.6 115.4
CD1 CG CD2 HG 239.3 243.5
CD2 CG CD1 HD11 6.8 112.1
CD2 CG CD1 HD12 246.9 231.5
CD2 CG CD1 HD13 126.9 350.7
OE CD2 CG HD2 180.0 182.7
HG CG CB HBC1 58.0 174.1
HG CG CB HBC2 179.8 288.3
CB CG HG CD1 121.2 122.0
CB CG HG CD2 240.0 241.7
CD1 CG HG CD2 118.8 119.7
HG CG CD1 HD11 245.0 357.2
HG CG CD1 HD12 125.0 116.6
HG CG CD1 HD13 5.0 235.8
HG CG CD2 OE 286.4 239.9
HG CG CD2 HD2 106.4 57.2
HD11 CD1 CG CD2 6.8 112.1
HD11 CD1 CG HG 245.0 357.2
CG CD1 HD11 HD12 240.0 121.0
CG CD1 HD11 HD13 120.0 236.4
HD12 CD1 HD11 HD13 240.0 115.4
HD12 CD1 CG CD2 246.9 231.5
HD12 CD1 CG HG 125.0 116.6
CG CD1 HD12 HD11 120.0 238.6
CG CD1 HD12 HD13 240.0 122.3
HD11 CD1 HD12 HD13 120.0 243.6
HD13 CD1 CG CD2 126.9 350.7
HD13 CD1 CG HG 5.0 235.8
CG CD1 HD13 HD11 240.0 122.9
CG CD1 HD13 HD12 120.0 238.8
HD11 CD1 HD13 HD12 240.0 115.9
OE CD2 CG HG 286.4 239.9
CG CD2 OE HD2 180.0 177.1
HD2 CD2 CG HG 106.4 57.2
CG CD2 HD2 OE 180.0 182.6
O C CA HA 185.5 240.1
CA C O OXT   181.0
O C OXT HXT   360.0
OXT C CA HA   61.0
CA C OXT O   179.1