PDB Chemical Component LDZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LDZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C5 C4 1.419 1.382
C5 C6 1.422 1.382
C4 C3 1.404 1.383
C6 C1 1.411 1.382
C3 C7 1.499 1.507
C3 C2 1.424 1.382
C7 O8 1.447 1.452
C1 C2 1.405 1.382
O8 C9 1.330 1.347
O31 C9 1.232 1.215
C9 N10 1.370 1.348
N10 C11 1.445 1.465
C33 C31 1.531 1.530
C31 C30 1.527 1.529
C31 C32 1.530 1.530
C11 C30 1.527 1.530
C11 C12 1.551 1.507
C27 C25 1.542 1.530
C26 C25 1.534 1.530
O32 C12 1.230 1.212
C25 C24 1.561 1.531
C12 N13 1.337 1.348
N13 C14 1.489 1.465
C24 C14 1.573 1.530
C14 C15 1.468 1.507
C15 O34 1.213 1.213
C15 N16 1.323 1.348
N16 C17 1.434 1.465
C17 C22 1.523 1.507
C17 C18 1.546 1.530
O33 C22 1.434 1.207
C19 C21 1.531 1.530
C19 C18 1.556 1.531
C19 C20 1.521 1.530
C1 H1 1.081 1.079
C2 H2 1.080 1.080
C4 H3 1.080 1.080
C5 H4 1.080 1.080
C6 H5 1.080 1.080
C7 H6 1.100 1.090
C7 H7 1.100 1.090
N10 H8 1.000 0.970
C11 H9 1.100 1.089
N13 H10 1.000 0.970
C14 H11 1.100 1.090
N16 H12 1.000 0.970
C17 H13 1.100 1.090
C18 H14 1.100 1.090
C18 H15 1.100 1.090
C19 H16 1.100 1.091
C20 H17 1.100 1.091
C20 H18 1.100 1.090
C20 H19 1.100 1.090
C21 H20 1.100 1.089
C21 H21 1.100 1.090
C21 H22 1.101 1.091
C22 H23 1.080 1.080
C24 H25 1.100 1.089
C24 H26 1.100 1.090
C25 H27 1.100 1.090
C26 H28 1.100 1.090
C26 H29 1.100 1.090
C26 H30 1.100 1.089
C27 H31 1.100 1.090
C27 H32 1.100 1.090
C27 H33 1.100 1.090
C30 H34 1.100 1.090
C30 H35 1.100 1.091
C31 H36 1.100 1.090
C32 H37 1.100 1.090
C32 H38 1.100 1.091
C32 H39 1.100 1.090
C33 H40 1.100 1.089
C33 H41 1.100 1.090
C33 H42 1.100 1.090

Bond Angles for LDZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C4 C3 119.5 120.0
C5 C4 H3 120.2 120.0
C5 C6 C1 120.1 120.0
C6 C5 H4 119.9 120.0
C5 C6 H5 119.9 120.0
C4 C3 C7 123.5 120.0
C4 C3 C2 120.1 120.0
C3 C4 H3 120.2 120.0
C6 C1 C2 119.5 120.0
C6 C1 H1 120.3 120.0
C1 C6 H5 119.9 120.0
C3 C7 O8 103.1 109.5
C3 C7 H6 111.1 109.5
C3 C7 H7 111.1 109.5
C3 C2 H2 119.7 120.0
C7 O8 C9 124.6 117.0
O8 C7 H6 111.1 109.5
O8 C7 H7 111.0 109.5
C2 C1 H1 120.2 120.0
C1 C2 H2 119.7 120.0
O8 C9 N10 116.1 120.0
O31 C9 N10 121.9 120.0
C9 N10 C11 116.7 120.0
C9 N10 H8 121.6 120.0
N10 C11 C30 110.3 109.5
N10 C11 C12 92.0 109.5
C11 N10 H8 121.7 120.0
N10 C11 H9 116.1 109.4
C33 C31 H36 110.1 109.4
C31 C30 H34 108.6 109.5
C31 C30 H35 108.5 109.5
C32 C31 H36 110.2 109.5
C31 C32 H37 109.5 109.5
C31 C32 H38 109.5 109.5
C31 C32 H39 109.5 109.5
C12 C11 C30 107.3 109.5
C30 C11 H9 114.6 109.5
C11 C30 H34 108.5 109.4
C11 C30 H35 108.6 109.4
C11 C12 N13 127.3 119.9
C12 C11 H9 114.2 109.5
C27 C25 H27 109.8 109.4
C26 C25 H27 109.9 109.5
O32 C12 N13 115.3 120.0
C25 C24 H25 108.0 109.5
C25 C24 H26 108.0 109.4
C12 N13 C14 112.9 120.0
C12 N13 H10 123.6 120.0
N13 C14 C15 107.2 109.5
C14 N13 H10 123.5 120.0
N13 C14 H11 109.6 109.5
C24 C14 H11 108.5 109.5
C14 C15 O34 121.0 120.0
C14 C15 N16 117.1 120.0
C15 C14 H11 109.9 109.4
O34 C15 N16 121.8 120.0
C15 N16 C17 121.3 120.0
C15 N16 H12 119.3 120.0
N16 C17 C22 107.1 109.5
N16 C17 C18 108.7 109.5
C17 N16 H12 119.3 120.0
N16 C17 H13 110.2 109.5
C22 C17 C18 113.2 109.5
C22 C17 H13 109.0 109.5
C17 C22 H23 124.8 120.0
C18 C17 H13 108.7 109.5
C17 C18 H14 109.1 109.5
C17 C18 H15 109.1 109.5
O33 C22 H23 124.9 120.0
C20 C19 C21 107.7 109.5
C21 C19 H16 109.3 109.4
C19 C21 H20 109.5 109.5
C19 C21 H21 109.4 109.5
C19 C21 H22 109.5 109.4
C19 C18 H14 109.1 109.4
C19 C18 H15 109.1 109.5
C20 C19 H16 109.4 109.5
C19 C20 H17 109.5 109.5
C19 C20 H18 109.5 109.5
C19 C20 H19 109.5 109.5
H6 C7 H7 109.5 109.4
H14 C18 H15 109.5 109.5
H17 C20 H18 109.4 109.4
H17 C20 H19 109.5 109.5
H18 C20 H19 109.4 109.5
H20 C21 H21 109.5 109.5
H20 C21 H22 109.5 109.5
H21 C21 H22 109.5 109.4
H25 C24 H26 109.5 109.5
H28 C26 H29 109.5 109.4
H28 C26 H30 109.5 109.5
H29 C26 H30 109.5 109.5
H31 C27 H32 109.4 109.4
H31 C27 H33 109.5 109.4
H32 C27 H33 109.5 109.5
H34 C30 H35 109.5 109.5
H37 C32 H38 109.4 109.5
H37 C32 H39 109.4 109.5
H38 C32 H39 109.5 109.4
H40 C33 H41 109.5 109.5
H40 C33 H42 109.5 109.5
H41 C33 H42 109.5 109.4

Torsion Angles for LDZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 C4 C3 C7 181.4 179.8
C5 C4 C3 C2 359.7 0.1
C3 C4 C5 H3 180.0 180.3
C6 C5 C4 C3 0.1 360.0
C6 C5 C4 H3 180.2 179.7
C5 C6 C1 C2 0.0 360.0
C5 C6 C1 H1 180.0 179.9
C1 C6 C5 H5 180.0 180.0
C5 C4 C3 H3 180.0 179.7
C4 C3 C7 O8 71.2 90.0
C4 C3 C7 H6 190.1 210.0
C4 C3 C7 H7 312.2 329.9
C4 C3 C2 H2 180.3 180.0
C1 C6 C5 H4 180.0 179.9
C5 C6 C1 H5 180.0 180.0
C2 C1 C6 H1 180.0 180.0
C6 C1 C2 H2 179.8 179.9
C4 C3 C7 C2 178.4 180.3
C7 C3 C4 H3 1.4 0.1
C7 C3 C2 H2 358.7 0.3
C3 C7 O8 C9 169.1 180.0
O8 C7 C3 H6 241.0 240.0
O8 C7 C3 H7 119.0 120.0
H6 C7 C3 H7 237.9 240.1
C4 C3 C2 C7 181.6 179.7
C2 C3 C4 H3 179.7 180.4
C3 C2 C1 H1 179.8 180.1
C1 C2 C3 H2 180.0 179.9
C3 C7 O8 H6 119.0 120.0
C3 C7 O8 H7 241.0 240.0
C7 O8 C9 N10 183.5 180.0
H6 C7 O8 H7 122.0 120.0
C4 C3 C2 C1 0.3 359.9
C6 C1 C2 H1 180.0 180.0
C2 C1 C6 H5 180.0 180.0
C3 C2 C1 H2 180.0 180.1
C9 O8 C7 H6 50.1 60.0
C9 O8 C7 H7 288.0 300.0
O31 C9 O8 N10 173.8 180.0
O8 C9 N10 C11 168.9 175.0
O8 C9 N10 H8 348.9 355.0
O8 C9 O31 N10 186.6 180.0
O31 C9 N10 C11 355.2 355.0
O31 C9 N10 H8 175.2 174.9
C9 N10 C11 C30 153.7 88.0
C9 N10 C11 C12 263.0 208.0
C11 N10 C9 H8 180.0 180.0
C9 N10 C11 H9 21.2 328.0
C9 N10 C11 H8 180.0 180.0
C12 C11 N10 C30 109.3 120.0
C30 C11 N10 H9 132.5 120.0
N10 C11 C30 H34 157.5 306.0
N10 C11 C30 H35 38.6 66.0
N10 C11 C12 N13 175.2 160.6
C12 C11 N10 H9 241.7 240.0
C33 C31 C30 H34 57.3 66.4
C33 C31 C30 H35 176.2 306.4
C32 C31 C33 H36 239.6 240.0
C33 C31 C32 H37 180.0 303.7
C33 C31 C32 H38 300.0 63.7
C33 C31 C32 H39 60.0 183.6
C31 C30 C11 H9 51.3 305.9
C11 C30 C31 H34 239.5 120.0
C11 C30 C31 H35 120.5 240.0
H34 C30 C31 H35 241.1 120.0
C33 C31 C32 H36 120.3 120.0
C32 C31 C30 H34 299.5 306.4
C32 C31 C30 H35 58.4 186.4
H37 C32 C31 H38 240.0 240.0
H37 C32 C31 H39 120.0 120.0
H38 C32 C31 H39 240.0 240.0
N10 C11 C30 C12 98.9 120.0
C30 C11 N10 H8 333.7 268.0
N10 C11 C30 H9 226.8 240.0
C31 C30 C11 H34 120.6 240.0
C31 C30 C11 H35 239.5 120.0
C30 C11 C12 N13 287.2 280.6
C12 C11 C30 H9 127.9 120.0
H34 C30 C11 H35 118.9 240.1
N10 C11 C12 C30 248.0 240.0
C12 C11 N10 H8 83.0 28.0
N10 C11 C12 H9 119.9 120.0
C30 C11 C12 H9 231.9 240.0
C12 C11 C30 H34 58.6 186.0
C12 C11 C30 H35 299.7 306.0
O32 C12 C11 N13 180.1 180.0
C11 C12 N13 C14 179.4 185.1
C11 C12 N13 H10 359.4 5.1
C26 C25 C27 H27 240.6 240.0
C27 C25 C24 H25 57.8 175.1
C27 C25 C24 H26 176.1 55.0
C27 C25 C26 H27 119.4 120.0
C26 C25 C24 H25 299.8 55.0
C26 C25 C24 H26 58.1 295.0
O32 C12 C11 C30 107.3 100.7
C11 C12 O32 N13 180.0 180.0
O32 C12 C11 H9 235.4 220.7
O32 C12 N13 C14 359.3 5.1
O32 C12 N13 H10 179.3 185.1
C25 C24 C14 H11 58.0 55.0
H25 C24 C25 H26 241.7 120.0
N13 C12 C11 C30 287.2 280.6
N13 C12 C11 H9 55.3 40.7
C12 N13 C14 C15 223.9 205.0
C14 N13 C12 H10 180.0 180.0
C12 N13 C14 H11 343.2 325.0
C12 N13 C14 H10 180.0 180.0
C24 C14 N13 H11 121.2 120.1
N13 C14 C15 O34 357.7 0.0
N13 C14 C15 N16 176.4 180.0
C15 C14 N13 H11 240.7 240.0
C24 C14 N13 H10 284.3 265.1
N13 C14 C24 H11 238.2 239.9
C24 C14 C15 N16 298.8 300.0
C15 C14 C24 H11 119.4 119.9
C15 C14 N13 H10 43.9 25.0
N13 C14 C15 H11 119.1 120.0
C24 C14 C15 H11 241.5 240.0
O34 C15 C14 N16 181.3 180.0
C14 C15 N16 C17 181.5 180.0
C14 C15 N16 H12 1.5 360.0
C14 C15 O34 N16 178.6 180.0
O34 C15 C14 H11 238.6 240.0
O34 C15 N16 C17 0.1 0.0
O34 C15 N16 H12 180.2 180.0
C14 C15 N16 O34 181.3 180.0
N16 C15 C14 H11 57.3 60.0
C15 N16 C17 C22 248.0 275.0
C15 N16 C17 C18 125.4 155.0
C17 N16 C15 H12 180.0 180.0
C15 N16 C17 H13 6.4 35.0
C15 N16 C17 H12 180.0 180.0
C22 C17 N16 C18 122.6 120.0
C22 C17 N16 H13 241.6 240.0
N16 C17 C22 H23 129.1 180.0
C18 C17 N16 H13 119.0 120.0
N16 C17 C18 H14 58.8 56.0
N16 C17 C18 H15 178.4 176.1
N16 C17 C22 C18 240.2 240.0
C22 C17 N16 H12 68.0 95.0
N16 C17 C22 H13 119.2 120.0
C18 C17 C22 H13 239.0 240.0
C22 C17 C18 H14 300.0 296.1
C22 C17 C18 H15 59.6 56.1
O33 C22 C17 H23 180.0 180.0
N16 C17 C18 C22 118.8 120.0
C18 C17 N16 H12 305.4 335.0
N16 C17 C18 H13 240.0 240.0
C22 C17 C18 H13 121.2 120.0
C18 C17 C22 H23 248.9 300.0
C19 C18 C17 H14 239.8 240.1
C19 C18 C17 H15 120.2 120.0
H14 C18 C17 H15 240.4 239.9
O33 C22 C17 H13 190.0 240.0
C17 C22 O33 H23 180.0 180.0
C21 C19 C18 H14 178.4 174.0
C21 C19 C18 H15 58.8 54.0
C20 C19 C21 H16 241.2 240.0
C21 C19 C20 H17 180.0 64.9
C21 C19 C20 H18 300.0 184.9
C21 C19 C20 H19 60.0 304.9
H20 C21 C19 H21 240.0 239.9
H20 C21 C19 H22 120.0 120.0
H21 C21 C19 H22 240.0 240.1
C19 C18 C17 H13 58.6 56.2
C17 C18 C19 H14 120.2 120.0
C17 C18 C19 H15 239.8 240.0
H14 C18 C19 H15 119.6 120.0
C21 C19 C20 H16 118.7 120.0
C20 C19 C21 H20 301.0 180.0
C20 C19 C21 H21 61.0 300.0
C20 C19 C21 H22 181.0 60.0
C20 C19 C18 H14 58.9 53.9
C20 C19 C18 H15 299.4 293.9
H17 C20 C19 H18 240.0 240.0
H17 C20 C19 H19 120.0 120.0
H18 C20 C19 H19 240.0 240.0
C6 C1 H1 C2 180.0 180.0
H1 C1 C6 H5 0.0 359.9
H1 C1 C2 H2 359.8 360.0
H2 C2 C1 H1 359.8 360.0
C5 C4 H3 C3 180.0 180.3
H3 C4 C3 C7 1.4 0.1
H3 C4 C3 C2 179.7 180.4
H4 C5 C4 C3 180.2 180.0
H4 C5 C4 H3 0.2 359.8
H4 C5 C6 C1 180.0 179.9
H4 C5 C6 H5 360.0 359.9
C5 C6 H5 C1 180.0 180.0
H5 C6 C5 H4 360.0 359.9
H5 C6 C1 C2 180.0 180.0
H5 C6 C1 H1 0.0 359.9
C3 C7 H6 O8 245.9 240.0
C3 C7 H6 H7 123.0 120.0
H6 C7 O8 C9 50.1 60.0
O8 C7 H6 H7 237.1 240.0
C3 C7 H7 O8 114.1 120.0
C3 C7 H7 H6 237.0 240.0
H7 C7 O8 C9 288.0 300.0
O8 C7 H7 H6 123.0 120.0
C9 N10 H8 C11 180.0 180.0
H8 N10 C11 C30 333.7 268.0
H8 N10 C11 C12 83.0 28.0
H8 N10 C11 H9 201.2 148.0
N10 C11 H9 C30 130.5 120.0
N10 C11 H9 C12 254.8 240.0
H9 C11 N10 H8 201.2 148.0
C12 C11 H9 C30 235.7 240.0
H9 C11 C30 H34 290.8 66.0
H9 C11 C30 H35 171.8 185.9
H9 C11 C12 N13 55.3 40.7
C12 N13 H10 C14 180.0 180.0
H10 N13 C14 C15 43.9 25.0
H10 N13 C14 H11 163.1 145.0
N13 C14 H11 C15 242.4 240.0
H11 C14 N13 H10 163.1 145.0
H11 C14 C15 O34 238.6 240.0
H11 C14 C15 N16 57.3 60.0
C15 N16 H12 C17 180.0 180.0
H12 N16 C17 C22 68.0 95.0
H12 N16 C17 C18 305.4 335.0
H12 N16 C17 H13 186.4 215.0
N16 C17 H13 C22 242.8 240.0
N16 C17 H13 C18 119.0 120.0
H13 C17 N16 H12 186.4 215.0
C22 C17 H13 C18 236.2 240.0
H13 C17 C22 H23 10.0 60.0
H13 C17 C18 H14 178.8 176.1
H13 C17 C18 H15 298.4 296.2
H14 C18 C17 H13 178.8 176.1
C17 C18 H14 H15 119.4 120.1
C19 C18 H14 H15 240.7 240.0
H15 C18 C17 H13 298.4 296.2
C17 C18 H15 H14 240.6 240.0
C19 C18 H15 H14 119.3 119.9
C20 C19 H16 C21 117.7 120.1
H16 C19 C21 H20 59.8 300.0
H16 C19 C21 H21 179.7 60.1
H16 C19 C21 H22 299.8 180.0
H16 C19 C18 H14 298.8 293.9
H16 C19 C18 H15 179.3 173.9
H16 C19 C20 H17 61.4 304.9
H16 C19 C20 H18 181.3 64.9
H16 C19 C20 H19 301.3 184.9
H17 C20 C19 C21 180.0 64.9
H17 C20 C19 H16 61.4 304.9
C19 C20 H17 H18 120.0 120.0
C19 C20 H17 H19 240.0 240.0
H18 C20 H17 H19 120.0 120.0
H18 C20 C19 C21 300.0 184.9
H18 C20 C19 H16 181.3 64.9
C19 C20 H18 H17 240.0 240.0
C19 C20 H18 H19 120.0 120.0
H17 C20 H18 H19 240.0 240.0
H19 C20 C19 C21 60.0 304.9
H19 C20 C19 H16 301.3 184.9
C19 C20 H19 H17 120.0 120.0
C19 C20 H19 H18 240.0 240.0
H17 C20 H19 H18 120.0 120.0
H20 C21 C19 H16 59.8 300.0
C19 C21 H20 H21 120.0 120.0
C19 C21 H20 H22 240.0 240.0
H21 C21 H20 H22 120.0 120.0
H21 C21 C19 H16 179.7 60.1
C19 C21 H21 H20 240.0 239.9
C19 C21 H21 H22 120.0 119.9
H20 C21 H21 H22 240.0 240.0
H22 C21 C19 H16 299.8 180.0
C19 C21 H22 H20 120.0 120.1
C19 C21 H22 H21 240.0 240.1
H20 C21 H22 H21 120.0 120.0
H23 C22 C17 C18 248.9 300.0
H23 C22 C17 H13 10.0 60.0
C25 C24 H25 H26 117.3 240.0
H25 C24 C14 H11 297.1 175.0
C25 C24 H26 H25 242.7 120.0
H26 C24 C14 H11 178.9 295.1
H27 C25 C24 H25 179.3 295.0
H27 C25 C24 H26 297.6 175.0
H28 C26 C25 H27 60.6 180.1
H29 C26 H28 H30 120.0 120.0
H29 C26 C25 H27 180.6 300.0
H28 C26 H29 H30 240.0 240.0
H30 C26 C25 H27 300.6 60.0
H28 C26 H30 H29 120.0 120.0
H31 C27 C25 H27 299.5 180.0
H32 C27 H31 H33 120.0 119.9
H32 C27 C25 H27 59.4 300.0
H31 C27 H32 H33 240.0 240.1
H33 C27 C25 H27 179.5 60.0
H31 C27 H33 H32 120.0 119.9
C31 C30 H34 H35 118.3 239.9
H34 C30 C11 H9 290.8 66.0
C11 C30 H34 H35 241.7 119.9
C31 C30 H35 H34 241.7 120.1
H35 C30 C11 H9 171.8 185.9
C11 C30 H35 H34 118.3 240.1
H36 C31 C30 H34 179.2 186.4
H36 C31 C30 H35 298.1 66.3
H36 C31 C32 H37 59.7 183.7
H36 C31 C32 H38 179.6 303.7
H36 C31 C32 H39 299.7 63.7
H37 C32 C31 H36 59.7 183.7
C31 C32 H37 H38 120.0 120.0
C31 C32 H37 H39 240.0 240.0
H38 C32 H37 H39 120.0 119.9
H38 C32 C31 H36 179.6 303.7
C31 C32 H38 H37 240.0 240.0
C31 C32 H38 H39 120.0 120.0
H37 C32 H38 H39 240.0 240.0
H39 C32 C31 H36 299.7 63.7
C31 C32 H39 H37 120.0 120.0
C31 C32 H39 H38 240.0 240.0
H37 C32 H39 H38 120.0 120.0
H40 C33 C31 H36 58.0 300.0
H41 C33 H40 H42 120.0 119.9
H41 C33 C31 H36 178.1 60.0
H40 C33 H41 H42 240.0 240.0
H42 C33 C31 H36 298.0 180.0
H40 C33 H42 H41 120.0 120.0