PDB Chemical Component LDT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LDT

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C4	1.390	1.385
C2	C5	1.376	1.384
C2	H2	1.103	1.080
C3	C6	1.378	1.376
C3	C7	1.386	1.398
C3	H3	1.103	1.080
C4	C7	1.409	1.403
C4	O15	1.358	1.356
C5	C6	1.387	1.388
C5	F9	1.351	1.351
C6	H6	1.103	1.080
C7	C11	1.482	1.472
BR8	C25	1.878	1.890
C11	S16	1.681	1.712
C11	N17	1.319	1.348
C13	N17	1.443	1.464
C13	C24	1.503	1.507
C13	H131	1.115	1.090
C13	H132	1.115	1.089
F14	C27	1.360	1.350
O15	C20	1.425	1.429
N17	H17	1.020	0.969
C20	C32	1.531	1.507
C20	H201	1.115	1.089
C20	H202	1.115	1.089
C24	C26	1.387	1.381
C24	C27	1.380	1.384
C25	C28	1.372	1.382
C25	C29	1.390	1.384
C26	C29	1.392	1.382
C26	H26	1.103	1.080
C27	C28	1.376	1.384
C28	H28	1.103	1.081
C29	H29	1.103	1.080
C32	O33	1.263	1.343
C32	O34	1.239	1.208
O33	H33	0.951	0.967

Bond Angles for LDT

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	C2	C5	118.1	120.1
C4	C2	H2	121.0	119.9
C2	C4	C7	120.2	119.7
C2	C4	O15	122.8	120.1
C5	C2	H2	120.9	120.0
C2	C5	C6	123.8	120.4
C2	C5	F9	117.6	119.8
C6	C3	C7	122.6	120.0
C6	C3	H3	118.7	120.0
C3	C6	C5	116.7	120.3
C3	C6	H6	121.7	119.9
C7	C3	H3	118.7	120.0
C3	C7	C4	118.6	119.6
C3	C7	C11	119.5	120.2
C7	C4	O15	116.8	120.2
C4	C7	C11	121.9	120.2
C4	O15	C20	116.8	106.8
C6	C5	F9	118.6	119.8
C5	C6	H6	121.7	119.8
C7	C11	S16	120.7	120.0
C7	C11	N17	114.9	120.0
BR8	C25	C28	120.2	120.1
BR8	C25	C29	117.8	120.0
S16	C11	N17	124.3	120.0
C11	N17	C13	123.4	119.9
C11	N17	H17	118.3	120.0
N17	C13	C24	112.3	109.4
N17	C13	H131	111.2	109.5
N17	C13	H132	111.2	109.5
C13	N17	H17	118.4	120.1
C24	C13	H131	111.1	109.4
C24	C13	H132	111.2	109.5
C13	C24	C26	123.6	120.0
C13	C24	C27	119.9	120.0
H131	C13	H132	99.1	109.5
F14	C27	C24	117.4	120.0
F14	C27	C28	118.1	120.1
O15	C20	C32	112.1	109.4
O15	C20	H201	111.3	109.5
O15	C20	H202	111.2	109.5
C32	C20	H201	111.2	109.4
C32	C20	H202	111.3	109.4
C20	C32	O33	114.0	120.0
C20	C32	O34	118.6	120.0
H201	C20	H202	99.1	109.6
C26	C24	C27	116.4	120.0
C24	C26	C29	121.7	120.1
C24	C26	H26	119.1	120.0
C24	C27	C28	124.4	120.0
C28	C25	C29	121.9	120.0
C25	C28	C27	117.1	120.0
C25	C28	H28	121.4	120.0
C25	C29	C26	118.4	120.0
C25	C29	H29	120.8	120.0
C29	C26	H26	119.2	119.9
C26	C29	H29	120.8	120.0
C27	C28	H28	121.5	120.0
O33	C32	O34	127.4	120.0
C32	O33	H33	114.0	120.0

Torsion Angles for LDT

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C2	C4	H2	180.0	180.0
C4	C2	C5	C6	360.0	360.0
C4	C2	C5	F9	178.9	180.0
C3	C7	C4	C2	358.3	359.5
C7	C4	C2	O15	175.0	180.3
C2	C4	C7	C11	176.5	180.0
C2	C4	O15	C20	325.2	0.0
C4	C2	C5	H2	180.0	180.0
C5	C2	C4	C7	0.9	0.3
C5	C2	C4	O15	185.9	180.0
C3	C6	C5	C2	359.9	0.0
C6	C5	C2	F9	181.1	180.0
C2	C5	C6	H6	179.9	180.0
C4	C2	H2	C5	180.0	180.0
H2	C2	C4	C7	180.9	180.3
H2	C2	C4	O15	6.0	360.0
H2	C2	C5	C6	180.0	180.0
H2	C2	C5	F9	358.9	360.0
C2	C5	C6	C3	359.9	0.0
C7	C3	C6	H3	180.0	179.8
C6	C3	C7	C4	1.5	0.5
C6	C3	C7	C11	183.3	180.0
C3	C6	C5	F9	181.0	180.0
C5	C6	C3	H6	180.0	180.0
C2	C4	C7	C3	358.3	359.5
C6	C3	C7	H3	180.0	180.2
C7	C3	C6	C5	359.4	359.8
C7	C3	C6	H6	179.4	179.8
C3	C7	C4	O15	173.6	179.8
C4	C7	C3	C11	178.2	180.4
C3	C7	C11	S16	318.9	180.0
C3	C7	C11	N17	136.8	360.0
C6	C3	H3	C7	180.0	179.8
H3	C3	C6	C5	179.4	180.0
H3	C3	C6	H6	359.4	360.0
H3	C3	C7	C4	181.5	180.2
H3	C3	C7	C11	3.3	359.8
C7	C4	C2	C5	0.9	0.3
C7	C4	C2	H2	180.9	180.3
C2	C4	C7	O15	184.7	179.7
C4	C7	C3	H3	181.5	180.2
C3	C7	C4	C11	181.8	179.6
C7	C4	O15	C20	150.1	179.7
C4	C7	C11	S16	140.8	359.6
C4	C7	C11	N17	318.7	179.5
O15	C4	C2	C5	185.9	180.0
O15	C4	C2	H2	6.0	360.0
C2	C4	O15	C7	175.2	180.3
O15	C4	C7	C11	351.8	0.2
C4	O15	C20	C32	291.8	180.0
C4	O15	C20	H201	166.6	60.0
C4	O15	C20	H202	57.1	299.9
C6	C5	C2	H2	180.0	180.0
C2	C5	C6	F9	178.9	180.0
C5	C6	C3	C7	359.4	359.8
C5	C6	C3	H3	179.4	180.0
C3	C6	C5	H6	180.0	180.0
F9	C5	C2	H2	358.9	360.0
C2	C5	F9	C6	181.0	180.0
F9	C5	C6	H6	1.0	360.0
H6	C6	C3	C7	179.4	179.8
H6	C6	C3	H3	359.4	360.0
C3	C6	H6	C5	180.0	180.0
H6	C6	C5	F9	1.0	360.0
C11	C7	C3	H3	3.3	359.8
C3	C7	C11	C4	178.2	180.4
C11	C7	C4	O15	351.8	0.2
S16	C11	C7	N17	182.1	180.0
C7	C11	N17	C13	180.8	180.1
C7	C11	N17	H17	0.8	360.0
C28	C25	BR8	C29	183.7	180.0
BR8	C25	C28	C27	175.6	179.8
BR8	C25	C28	H28	355.6	360.0
BR8	C25	C29	C26	184.2	180.1
BR8	C25	C29	H29	4.2	360.0
C7	C11	S16	N17	177.7	180.0
S16	C11	N17	C13	358.6	0.0
S16	C11	N17	H17	178.6	179.9
C7	C11	N17	S16	182.2	180.0
C11	N17	C13	C24	101.9	180.0
C11	N17	C13	H131	336.7	300.0
C11	N17	C13	H132	227.2	60.0
C13	N17	C11	H17	180.0	180.1
C11	N17	C13	H17	180.0	179.9
C24	C13	N17	H131	125.3	240.0
C24	C13	N17	H132	234.7	120.0
N17	C13	C24	C26	352.8	120.0
N17	C13	C24	C27	170.8	299.7
H131	C13	N17	H132	109.5	240.0
N17	C13	C24	H131	234.7	120.0
N17	C13	C24	H132	125.3	240.0
C24	C13	N17	H17	281.9	0.1
H131	C13	C24	H132	250.6	120.0
F14	C27	C24	C13	1.1	0.2
C26	C24	C13	C27	182.0	180.3
C13	C24	C26	C29	177.0	180.0
C13	C24	C26	H26	357.0	360.0
C13	C24	C27	C28	182.9	179.8
N17	C13	H131	C24	125.9	240.1
N17	C13	H131	H132	242.9	120.1
H131	C13	N17	H17	156.6	120.0
C24	C13	H131	H132	117.0	240.0
H131	C13	C24	C26	118.1	360.0
H131	C13	C24	C27	296.1	179.7
N17	C13	H132	C24	234.1	120.0
N17	C13	H132	H131	117.1	239.9
H132	C13	N17	H17	47.2	240.1
C24	C13	H132	H131	243.0	120.0
H132	C13	C24	C26	227.5	240.0
H132	C13	C24	C27	45.5	59.8
C13	C24	C27	F14	1.1	0.2
C26	C24	C27	F14	179.2	179.9
C24	C27	F14	C28	181.7	179.6
C25	C28	C27	F14	181.6	180.1
F14	C27	C28	H28	1.6	359.9
C32	C20	O15	H201	125.2	120.0
C32	C20	O15	H202	234.7	240.1
O15	C20	C32	O33	161.9	180.0
O15	C20	C32	O34	340.8	360.0
H201	C20	O15	H202	109.5	120.1
C11	N17	H17	C13	180.0	180.1
H17	N17	C13	C24	281.9	0.1
H17	N17	C13	H131	156.6	120.0
H17	N17	C13	H132	47.2	240.1
O15	C20	C32	H201	234.7	240.0
O15	C20	C32	H202	125.3	119.9
H201	C20	C32	H202	250.5	239.9
O33	C32	C20	O34	181.1	180.0
C20	C32	O33	H33	180.0	180.0
O15	C20	H201	C32	125.7	120.0
O15	C20	H201	H202	242.9	239.9
C32	C20	H201	H202	117.1	120.0
H201	C20	C32	O33	287.2	300.0
H201	C20	C32	O34	106.1	120.0
O15	C20	H202	C32	234.3	240.1
O15	C20	H202	H201	117.2	120.1
C32	C20	H202	H201	242.9	240.0
H202	C20	C32	O33	36.7	60.1
H202	C20	C32	O34	215.5	240.1
C26	C24	C13	H131	118.1	360.0
C26	C24	C13	H132	227.5	240.0
C13	C24	C26	C27	178.0	179.7
F14	C27	C24	C26	179.2	179.9
C26	C24	C27	C28	1.0	359.6
C25	C29	C26	C24	0.4	359.9
C29	C26	C24	H26	180.0	180.1
C24	C26	C29	H29	180.4	180.0
C27	C24	C13	H131	296.1	179.7
C27	C24	C13	H132	45.5	59.8
C13	C24	C27	C26	181.9	180.3
F14	C27	C24	C28	178.2	180.4
C27	C24	C26	C29	359.0	0.3
C27	C24	C26	H26	179.0	180.2
C25	C28	C27	C24	359.8	0.4
C24	C27	C28	H28	179.8	180.2
BR8	C25	C28	C29	176.1	180.0
F14	C27	C28	C25	181.6	180.1
C24	C27	C28	C25	359.8	0.4
C28	C25	C29	C26	0.4	0.1
C28	C25	C29	H29	180.4	180.0
C27	C28	C25	H28	180.0	179.8
BR8	C25	C29	C28	183.8	180.0
C24	C26	C29	C25	0.4	359.9
C29	C25	C28	C27	359.5	359.8
C29	C25	C28	H28	179.5	180.0
C25	C29	C26	H26	180.3	180.0
C26	C29	C25	H29	180.0	180.1
C29	C26	C24	C27	359.0	0.3
C24	C26	C29	H26	180.0	179.9
C25	C29	C26	H29	180.0	179.9
H26	C26	C24	C27	179.0	180.2
C24	C26	H26	C29	180.0	180.1
H26	C26	C29	H29	0.3	0.0
F14	C27	C28	C24	181.8	179.6
C27	C28	C25	C29	359.5	359.8
C25	C28	C27	H28	180.0	180.2
H28	C28	C25	C29	179.5	180.0
C25	C28	H28	C27	180.0	179.8
C25	C29	H29	C26	180.0	180.1
H29	C29	C26	H26	0.3	0.0
O33	C32	C20	H201	287.2	300.0
O33	C32	C20	H202	36.7	60.1
C20	C32	O33	O34	178.8	180.0
O34	C32	C20	H201	106.1	120.0
O34	C32	C20	H202	215.5	240.1
C20	C32	O34	O33	181.3	180.0
O34	C32	O33	H33	1.3	360.0
H33	O33	C32	O34	1.3	360.0