PDB Chemical Component LDP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LDP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C7 C1 1.600 1.506
C7 C8 1.629 1.530
C7 H71 1.115 1.090
C7 H72 1.115 1.089
C1 C2 1.497 1.381
C1 C6 1.507 1.382
C4 C5 1.453 1.386
C4 C3 1.507 1.391
C4 O2 1.377 1.361
C2 C3 1.472 1.386
C2 H2 1.104 1.080
C6 C5 1.426 1.382
C6 H6 1.102 1.080
C5 H5 1.102 1.079
C3 O1 1.377 1.360
O1 HO1 0.951 0.966
O2 HO2 0.951 0.965
C8 N1 1.522 1.468
C8 H81 1.115 1.091
C8 H82 1.115 1.089
N1 HN11 1.020 1.009
N1 HN12 1.020 1.009

Bond Angles for LDP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C7 C8 114.3 109.5
C1 C7 H71 110.5 109.5
C1 C7 H72 110.5 109.5
C7 C1 C2 121.9 119.9
C7 C1 C6 119.7 120.0
C8 C7 H71 110.5 109.4
C8 C7 H72 110.5 109.5
C7 C8 N1 113.0 109.5
C7 C8 H81 110.9 109.4
C7 C8 H82 110.9 109.5
H71 C7 H72 99.8 109.4
C2 C1 C6 118.4 120.1
C1 C2 C3 119.6 120.0
C1 C2 H2 121.0 120.0
C1 C6 C5 121.9 120.2
C1 C6 H6 121.9 119.9
C5 C4 C3 120.9 119.9
C5 C4 O2 117.5 120.1
C4 C5 C6 120.0 120.0
C4 C5 H5 120.9 120.0
C3 C4 O2 121.5 120.0
C4 C3 C2 119.2 119.8
C4 C3 O1 118.6 120.1
C4 O2 HO2 117.5 106.9
C3 C2 H2 119.4 119.9
C2 C3 O1 122.2 120.1
C5 C6 H6 116.2 119.9
C6 C5 H5 119.1 120.1
C3 O1 HO1 118.6 106.8
N1 C8 H81 111.0 109.5
N1 C8 H82 111.0 109.5
C8 N1 HN11 112.9 106.8
C8 N1 HN12 110.9 106.7
H81 C8 H82 99.4 109.4
HN11 N1 HN12 111.0 106.6

Torsion Angles for LDP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8 C7 C1 H71 234.7 119.9
C8 C7 C1 H72 125.3 239.9
C1 C7 C8 N1 304.1 180.0
C1 C7 C8 H81 69.4 60.0
C1 C7 C8 H82 178.8 300.1
H71 C7 C1 H72 250.5 120.0
C2 C1 C7 C6 180.0 179.8
C7 C1 C2 C3 180.1 179.8
C7 C1 C2 H2 0.1 0.2
C7 C1 C6 C5 179.9 180.0
C7 C1 C6 H6 359.9 0.0
C1 C7 C8 H71 125.3 240.0
C1 C7 C8 H72 234.7 120.1
C8 C7 C1 C2 216.5 269.7
C8 C7 C1 C6 36.5 89.9
H71 C7 C8 H72 109.5 240.1
N1 C8 C7 H81 234.7 120.0
N1 C8 C7 H82 125.3 239.9
C7 C8 N1 HN11 180.0 180.1
C7 C8 N1 HN12 54.7 293.8
H81 C8 C7 H82 250.6 119.9
C1 C7 H71 C8 232.6 120.0
C1 C7 H71 H72 116.3 239.9
H71 C7 C1 C2 341.7 149.8
H71 C7 C1 C6 161.8 330.0
C8 C7 H71 H72 243.7 119.9
H71 C7 C8 N1 178.8 300.0
H71 C7 C8 H81 304.1 180.0
H71 C7 C8 H82 53.6 60.1
C1 C7 H72 C8 127.4 239.9
C1 C7 H72 H71 243.7 120.0
H72 C7 C1 C2 91.2 29.8
H72 C7 C1 C6 271.2 210.0
C8 C7 H72 H71 116.3 240.1
H72 C7 C8 N1 69.4 59.9
H72 C7 C8 H81 194.7 299.9
H72 C7 C8 H82 304.1 180.0
C2 C1 C7 C8 216.5 269.7
C2 C1 C7 H71 341.7 149.8
C2 C1 C7 H72 91.2 29.8
C7 C1 C2 C6 180.0 180.2
C2 C1 C6 C5 360.0 0.2
C2 C1 C6 H6 180.0 180.2
C4 C3 C2 C1 0.0 0.5
C3 C2 C1 H2 180.0 179.6
C1 C2 C3 O1 180.0 180.2
C6 C1 C7 C8 36.5 89.9
C6 C1 C7 H71 161.8 330.0
C6 C1 C7 H72 271.2 210.0
C7 C1 C6 C2 180.0 179.8
C6 C1 C2 C3 0.1 359.6
C6 C1 C2 H2 180.1 180.0
C4 C5 C6 C1 359.9 0.0
C5 C6 C1 H6 180.0 179.9
C1 C6 C5 H5 179.9 180.0
C1 C6 C5 C4 359.9 0.0
C3 C4 C5 O2 180.0 180.0
C5 C4 C3 C2 359.8 359.7
C5 C4 C3 O1 179.9 180.0
C5 C4 O2 HO2 180.0 90.0
C4 C5 C6 H6 179.9 180.0
C6 C5 C4 H5 180.0 180.0
C1 C2 C3 C4 0.0 0.5
C5 C4 C3 O2 180.0 180.0
C3 C4 C5 C6 0.2 360.0
C3 C4 C5 H5 180.2 180.0
C3 C4 O2 HO2 359.9 270.0
C4 C3 C2 H2 180.0 180.1
C2 C3 C4 O1 180.0 179.7
C4 C3 O1 HO1 180.0 89.9
C5 C4 O2 C3 180.0 180.0
O2 C4 C5 C6 180.2 180.0
O2 C4 C5 H5 0.1 0.0
O2 C4 C3 C2 179.9 179.7
O2 C4 C3 O1 359.9 360.0
C3 C2 C1 C6 0.1 359.6
C1 C2 C3 H2 180.0 180.4
C2 C3 C4 O2 179.9 179.7
C4 C3 C2 O1 180.0 180.3
C2 C3 O1 HO1 0.0 270.2
H2 C2 C1 C6 180.1 180.0
C1 C2 H2 C3 180.0 179.6
H2 C2 C3 O1 360.0 359.8
C1 C6 C5 H6 180.0 180.1
C6 C5 C4 C3 0.2 360.0
C6 C5 C4 O2 180.2 180.0
C4 C5 C6 H5 180.0 180.0
C1 C6 H6 C5 180.0 179.9
H6 C6 C5 H5 359.9 360.0
H5 C5 C4 C3 180.2 180.0
H5 C5 C4 O2 0.1 0.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 H6 359.9 360.0
O1 C3 C4 O2 359.9 360.0
C4 C3 O1 C2 180.0 179.7
O1 C3 C2 H2 360.0 359.8
N1 C8 C7 H71 178.8 300.0
N1 C8 C7 H72 69.4 59.9
C7 C8 N1 H81 125.2 240.0
C7 C8 N1 H82 234.8 120.1
H81 C8 N1 H82 109.5 240.1
HN11 N1 C8 HN12 125.3 246.3
H81 C8 C7 H71 304.1 180.0
H81 C8 C7 H72 194.7 299.9
C7 C8 H81 N1 233.6 120.0
C7 C8 H81 H82 116.8 240.1
N1 C8 H81 H82 243.1 120.0
H81 C8 N1 HN11 54.8 300.0
H81 C8 N1 HN12 289.5 53.8
H82 C8 C7 H71 53.6 60.1
H82 C8 C7 H72 304.1 180.0
C7 C8 H82 N1 126.4 239.9
C7 C8 H82 H81 243.3 119.9
N1 C8 H82 H81 116.9 240.0
H82 C8 N1 HN11 305.3 60.0
H82 C8 N1 HN12 180.0 173.7
HN11 N1 C8 H81 54.8 300.0
HN11 N1 C8 H82 305.3 60.0
C8 N1 HN11 HN12 234.8 113.8
HN12 N1 C8 H81 289.5 53.8
HN12 N1 C8 H82 180.0 173.7
C8 N1 HN12 HN11 126.4 246.2