PDB Chemical Component LDP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LDP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C7 |
C1 |
1.600 |
1.506 |
C7 |
C8 |
1.629 |
1.530 |
C7 |
H71 |
1.115 |
1.090 |
C7 |
H72 |
1.115 |
1.089 |
C1 |
C2 |
1.497 |
1.381 |
C1 |
C6 |
1.507 |
1.382 |
C4 |
C5 |
1.453 |
1.386 |
C4 |
C3 |
1.507 |
1.391 |
C4 |
O2 |
1.377 |
1.361 |
C2 |
C3 |
1.472 |
1.386 |
C2 |
H2 |
1.104 |
1.080 |
C6 |
C5 |
1.426 |
1.382 |
C6 |
H6 |
1.102 |
1.080 |
C5 |
H5 |
1.102 |
1.079 |
C3 |
O1 |
1.377 |
1.360 |
O1 |
HO1 |
0.951 |
0.966 |
O2 |
HO2 |
0.951 |
0.965 |
C8 |
N1 |
1.522 |
1.468 |
C8 |
H81 |
1.115 |
1.091 |
C8 |
H82 |
1.115 |
1.089 |
N1 |
HN11 |
1.020 |
1.009 |
N1 |
HN12 |
1.020 |
1.009 |
Bond Angles for LDP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
C7 |
C8 |
114.3 |
109.5 |
C1 |
C7 |
H71 |
110.5 |
109.5 |
C1 |
C7 |
H72 |
110.5 |
109.5 |
C7 |
C1 |
C2 |
121.9 |
119.9 |
C7 |
C1 |
C6 |
119.7 |
120.0 |
C8 |
C7 |
H71 |
110.5 |
109.4 |
C8 |
C7 |
H72 |
110.5 |
109.5 |
C7 |
C8 |
N1 |
113.0 |
109.5 |
C7 |
C8 |
H81 |
110.9 |
109.4 |
C7 |
C8 |
H82 |
110.9 |
109.5 |
H71 |
C7 |
H72 |
99.8 |
109.4 |
C2 |
C1 |
C6 |
118.4 |
120.1 |
C1 |
C2 |
C3 |
119.6 |
120.0 |
C1 |
C2 |
H2 |
121.0 |
120.0 |
C1 |
C6 |
C5 |
121.9 |
120.2 |
C1 |
C6 |
H6 |
121.9 |
119.9 |
C5 |
C4 |
C3 |
120.9 |
119.9 |
C5 |
C4 |
O2 |
117.5 |
120.1 |
C4 |
C5 |
C6 |
120.0 |
120.0 |
C4 |
C5 |
H5 |
120.9 |
120.0 |
C3 |
C4 |
O2 |
121.5 |
120.0 |
C4 |
C3 |
C2 |
119.2 |
119.8 |
C4 |
C3 |
O1 |
118.6 |
120.1 |
C4 |
O2 |
HO2 |
117.5 |
106.9 |
C3 |
C2 |
H2 |
119.4 |
119.9 |
C2 |
C3 |
O1 |
122.2 |
120.1 |
C5 |
C6 |
H6 |
116.2 |
119.9 |
C6 |
C5 |
H5 |
119.1 |
120.1 |
C3 |
O1 |
HO1 |
118.6 |
106.8 |
N1 |
C8 |
H81 |
111.0 |
109.5 |
N1 |
C8 |
H82 |
111.0 |
109.5 |
C8 |
N1 |
HN11 |
112.9 |
106.8 |
C8 |
N1 |
HN12 |
110.9 |
106.7 |
H81 |
C8 |
H82 |
99.4 |
109.4 |
HN11 |
N1 |
HN12 |
111.0 |
106.6 |
Torsion Angles for LDP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
C7 |
C1 |
H71 |
234.7 |
119.9 |
C8 |
C7 |
C1 |
H72 |
125.3 |
239.9 |
C1 |
C7 |
C8 |
N1 |
304.1 |
180.0 |
C1 |
C7 |
C8 |
H81 |
69.4 |
60.0 |
C1 |
C7 |
C8 |
H82 |
178.8 |
300.1 |
H71 |
C7 |
C1 |
H72 |
250.5 |
120.0 |
C2 |
C1 |
C7 |
C6 |
180.0 |
179.8 |
C7 |
C1 |
C2 |
C3 |
180.1 |
179.8 |
C7 |
C1 |
C2 |
H2 |
0.1 |
0.2 |
C7 |
C1 |
C6 |
C5 |
179.9 |
180.0 |
C7 |
C1 |
C6 |
H6 |
359.9 |
0.0 |
C1 |
C7 |
C8 |
H71 |
125.3 |
240.0 |
C1 |
C7 |
C8 |
H72 |
234.7 |
120.1 |
C8 |
C7 |
C1 |
C2 |
216.5 |
269.7 |
C8 |
C7 |
C1 |
C6 |
36.5 |
89.9 |
H71 |
C7 |
C8 |
H72 |
109.5 |
240.1 |
N1 |
C8 |
C7 |
H81 |
234.7 |
120.0 |
N1 |
C8 |
C7 |
H82 |
125.3 |
239.9 |
C7 |
C8 |
N1 |
HN11 |
180.0 |
180.1 |
C7 |
C8 |
N1 |
HN12 |
54.7 |
293.8 |
H81 |
C8 |
C7 |
H82 |
250.6 |
119.9 |
C1 |
C7 |
H71 |
C8 |
232.6 |
120.0 |
C1 |
C7 |
H71 |
H72 |
116.3 |
239.9 |
H71 |
C7 |
C1 |
C2 |
341.7 |
149.8 |
H71 |
C7 |
C1 |
C6 |
161.8 |
330.0 |
C8 |
C7 |
H71 |
H72 |
243.7 |
119.9 |
H71 |
C7 |
C8 |
N1 |
178.8 |
300.0 |
H71 |
C7 |
C8 |
H81 |
304.1 |
180.0 |
H71 |
C7 |
C8 |
H82 |
53.6 |
60.1 |
C1 |
C7 |
H72 |
C8 |
127.4 |
239.9 |
C1 |
C7 |
H72 |
H71 |
243.7 |
120.0 |
H72 |
C7 |
C1 |
C2 |
91.2 |
29.8 |
H72 |
C7 |
C1 |
C6 |
271.2 |
210.0 |
C8 |
C7 |
H72 |
H71 |
116.3 |
240.1 |
H72 |
C7 |
C8 |
N1 |
69.4 |
59.9 |
H72 |
C7 |
C8 |
H81 |
194.7 |
299.9 |
H72 |
C7 |
C8 |
H82 |
304.1 |
180.0 |
C2 |
C1 |
C7 |
C8 |
216.5 |
269.7 |
C2 |
C1 |
C7 |
H71 |
341.7 |
149.8 |
C2 |
C1 |
C7 |
H72 |
91.2 |
29.8 |
C7 |
C1 |
C2 |
C6 |
180.0 |
180.2 |
C2 |
C1 |
C6 |
C5 |
360.0 |
0.2 |
C2 |
C1 |
C6 |
H6 |
180.0 |
180.2 |
C4 |
C3 |
C2 |
C1 |
0.0 |
0.5 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.6 |
C1 |
C2 |
C3 |
O1 |
180.0 |
180.2 |
C6 |
C1 |
C7 |
C8 |
36.5 |
89.9 |
C6 |
C1 |
C7 |
H71 |
161.8 |
330.0 |
C6 |
C1 |
C7 |
H72 |
271.2 |
210.0 |
C7 |
C1 |
C6 |
C2 |
180.0 |
179.8 |
C6 |
C1 |
C2 |
C3 |
0.1 |
359.6 |
C6 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
C4 |
C5 |
C6 |
C1 |
359.9 |
0.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
179.9 |
C1 |
C6 |
C5 |
H5 |
179.9 |
180.0 |
C1 |
C6 |
C5 |
C4 |
359.9 |
0.0 |
C3 |
C4 |
C5 |
O2 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
C2 |
359.8 |
359.7 |
C5 |
C4 |
C3 |
O1 |
179.9 |
180.0 |
C5 |
C4 |
O2 |
HO2 |
180.0 |
90.0 |
C4 |
C5 |
C6 |
H6 |
179.9 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
0.0 |
0.5 |
C5 |
C4 |
C3 |
O2 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.2 |
360.0 |
C3 |
C4 |
C5 |
H5 |
180.2 |
180.0 |
C3 |
C4 |
O2 |
HO2 |
359.9 |
270.0 |
C4 |
C3 |
C2 |
H2 |
180.0 |
180.1 |
C2 |
C3 |
C4 |
O1 |
180.0 |
179.7 |
C4 |
C3 |
O1 |
HO1 |
180.0 |
89.9 |
C5 |
C4 |
O2 |
C3 |
180.0 |
180.0 |
O2 |
C4 |
C5 |
C6 |
180.2 |
180.0 |
O2 |
C4 |
C5 |
H5 |
0.1 |
0.0 |
O2 |
C4 |
C3 |
C2 |
179.9 |
179.7 |
O2 |
C4 |
C3 |
O1 |
359.9 |
360.0 |
C3 |
C2 |
C1 |
C6 |
0.1 |
359.6 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.4 |
C2 |
C3 |
C4 |
O2 |
179.9 |
179.7 |
C4 |
C3 |
C2 |
O1 |
180.0 |
180.3 |
C2 |
C3 |
O1 |
HO1 |
0.0 |
270.2 |
H2 |
C2 |
C1 |
C6 |
180.1 |
180.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.6 |
H2 |
C2 |
C3 |
O1 |
360.0 |
359.8 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
C6 |
C5 |
C4 |
C3 |
0.2 |
360.0 |
C6 |
C5 |
C4 |
O2 |
180.2 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
179.9 |
H6 |
C6 |
C5 |
H5 |
359.9 |
360.0 |
H5 |
C5 |
C4 |
C3 |
180.2 |
180.0 |
H5 |
C5 |
C4 |
O2 |
0.1 |
0.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
H6 |
359.9 |
360.0 |
O1 |
C3 |
C4 |
O2 |
359.9 |
360.0 |
C4 |
C3 |
O1 |
C2 |
180.0 |
179.7 |
O1 |
C3 |
C2 |
H2 |
360.0 |
359.8 |
N1 |
C8 |
C7 |
H71 |
178.8 |
300.0 |
N1 |
C8 |
C7 |
H72 |
69.4 |
59.9 |
C7 |
C8 |
N1 |
H81 |
125.2 |
240.0 |
C7 |
C8 |
N1 |
H82 |
234.8 |
120.1 |
H81 |
C8 |
N1 |
H82 |
109.5 |
240.1 |
HN11 |
N1 |
C8 |
HN12 |
125.3 |
246.3 |
H81 |
C8 |
C7 |
H71 |
304.1 |
180.0 |
H81 |
C8 |
C7 |
H72 |
194.7 |
299.9 |
C7 |
C8 |
H81 |
N1 |
233.6 |
120.0 |
C7 |
C8 |
H81 |
H82 |
116.8 |
240.1 |
N1 |
C8 |
H81 |
H82 |
243.1 |
120.0 |
H81 |
C8 |
N1 |
HN11 |
54.8 |
300.0 |
H81 |
C8 |
N1 |
HN12 |
289.5 |
53.8 |
H82 |
C8 |
C7 |
H71 |
53.6 |
60.1 |
H82 |
C8 |
C7 |
H72 |
304.1 |
180.0 |
C7 |
C8 |
H82 |
N1 |
126.4 |
239.9 |
C7 |
C8 |
H82 |
H81 |
243.3 |
119.9 |
N1 |
C8 |
H82 |
H81 |
116.9 |
240.0 |
H82 |
C8 |
N1 |
HN11 |
305.3 |
60.0 |
H82 |
C8 |
N1 |
HN12 |
180.0 |
173.7 |
HN11 |
N1 |
C8 |
H81 |
54.8 |
300.0 |
HN11 |
N1 |
C8 |
H82 |
305.3 |
60.0 |
C8 |
N1 |
HN11 |
HN12 |
234.8 |
113.8 |
HN12 |
N1 |
C8 |
H81 |
289.5 |
53.8 |
HN12 |
N1 |
C8 |
H82 |
180.0 |
173.7 |
C8 |
N1 |
HN12 |
HN11 |
126.4 |
246.2 |