PDB Chemical Component LDN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LDN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAI |
CAA |
1.404 |
1.362 |
| CAA |
CAB |
1.379 |
1.392 |
| CAA |
HAA |
1.080 |
1.081 |
| CAJ |
CAB |
1.380 |
1.363 |
| CAB |
HAB |
1.080 |
1.080 |
| CAC |
NAR |
1.311 |
1.311 |
| CAC |
CAD |
1.392 |
1.386 |
| CAC |
HAC |
1.080 |
1.080 |
| CAD |
CAY |
1.391 |
1.395 |
| CAD |
HAD |
1.080 |
1.080 |
| CAV |
CAE |
1.398 |
1.393 |
| CAE |
CAG |
1.395 |
1.379 |
| CAE |
HAE |
1.080 |
1.080 |
| CAF |
CAV |
1.394 |
1.394 |
| CAF |
CAH |
1.401 |
1.379 |
| CAF |
HAF |
1.080 |
1.080 |
| CAX |
CAG |
1.384 |
1.390 |
| CAG |
HAG |
1.080 |
1.079 |
| CAH |
CAX |
1.375 |
1.390 |
| CAH |
HAH |
1.080 |
1.080 |
| CBA |
CAI |
1.384 |
1.405 |
| CAI |
HAI |
1.080 |
1.080 |
| CBB |
CAJ |
1.403 |
1.399 |
| CAJ |
HAJ |
1.080 |
1.080 |
| NAS |
CAK |
1.328 |
1.312 |
| CAK |
CAW |
1.397 |
1.410 |
| CAK |
HAK |
1.080 |
1.080 |
| CAZ |
CAL |
1.345 |
1.402 |
| CAL |
NAT |
1.347 |
1.310 |
| CAL |
HAL |
1.080 |
1.080 |
| CAW |
CAM |
1.387 |
1.368 |
| NBE |
CAM |
1.399 |
1.364 |
| CAM |
HAM |
1.080 |
1.080 |
| NAU |
CAN |
1.472 |
1.470 |
| CAP |
CAN |
1.559 |
1.530 |
| CAN |
HAN |
1.100 |
1.089 |
| CAN |
HANA |
1.100 |
1.090 |
| CAQ |
CAO |
1.515 |
1.532 |
| CAO |
NAU |
1.476 |
1.469 |
| CAO |
HAO |
1.100 |
1.090 |
| CAO |
HAOA |
1.100 |
1.091 |
| NBD |
CAP |
1.519 |
1.470 |
| CAP |
HAP |
1.100 |
1.090 |
| CAP |
HAPA |
1.100 |
1.090 |
| CAQ |
NBD |
1.471 |
1.470 |
| CAQ |
HAQ |
1.100 |
1.090 |
| CAQ |
HAQA |
1.100 |
1.090 |
| NAR |
CBA |
1.365 |
1.337 |
| NAS |
CBC |
1.353 |
1.336 |
| NBE |
NAT |
1.256 |
1.400 |
| NAU |
HNAU |
1.000 |
1.008 |
| CAW |
CAV |
1.431 |
1.485 |
| CAX |
NBD |
1.398 |
1.397 |
| CAY |
CBB |
1.412 |
1.464 |
| CAY |
CAZ |
1.421 |
1.475 |
| CBC |
CAZ |
1.409 |
1.404 |
| CBA |
CBB |
1.394 |
1.415 |
| CBC |
NBE |
1.397 |
1.369 |
Bond Angles for LDN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAI |
CAA |
HAA |
120.6 |
119.4 |
| CAB |
CAA |
HAA |
120.6 |
119.4 |
| CAA |
CAB |
HAB |
120.0 |
119.6 |
| CAJ |
CAB |
HAB |
120.0 |
119.6 |
| CAD |
CAC |
NAR |
121.7 |
122.6 |
| NAR |
CAC |
HAC |
119.2 |
118.7 |
| CAC |
NAR |
CBA |
119.3 |
122.4 |
| CAD |
CAC |
HAC |
119.2 |
118.7 |
| CAC |
CAD |
CAY |
121.8 |
119.5 |
| CAC |
CAD |
HAD |
119.1 |
120.3 |
| CAY |
CAD |
HAD |
119.1 |
120.2 |
| CAD |
CAY |
CBB |
115.7 |
117.1 |
| CAD |
CAY |
CAZ |
118.6 |
121.4 |
| CAV |
CAE |
HAE |
119.0 |
120.0 |
| CAG |
CAE |
HAE |
119.0 |
120.0 |
| CAE |
CAG |
HAG |
119.9 |
120.0 |
| CAH |
CAF |
CAV |
120.6 |
119.9 |
| CAV |
CAF |
HAF |
119.7 |
120.1 |
| CAH |
CAF |
HAF |
119.7 |
120.0 |
| CAF |
CAH |
CAX |
121.7 |
120.0 |
| CAF |
CAH |
HAH |
119.1 |
120.0 |
| CAX |
CAG |
HAG |
119.8 |
120.0 |
| CAX |
CAH |
HAH |
119.2 |
120.0 |
| CAH |
CAX |
NBD |
118.8 |
119.9 |
| CBA |
CAI |
HAI |
119.2 |
120.2 |
| CBB |
CAJ |
HAJ |
119.2 |
120.2 |
| NAS |
CAK |
CAW |
121.8 |
120.1 |
| NAS |
CAK |
HAK |
119.1 |
119.9 |
| CAW |
CAK |
HAK |
119.1 |
120.0 |
| CAK |
CAW |
CAM |
116.7 |
119.2 |
| CAK |
CAW |
CAV |
123.5 |
120.5 |
| CAZ |
CAL |
HAL |
125.1 |
125.6 |
| NAT |
CAL |
HAL |
125.1 |
125.6 |
| CAW |
CAM |
HAM |
119.1 |
120.5 |
| NBE |
CAM |
HAM |
119.2 |
120.5 |
| NAU |
CAN |
HAN |
108.2 |
109.5 |
| NAU |
CAN |
HANA |
108.2 |
109.5 |
| CAP |
CAN |
HAN |
108.2 |
109.5 |
| CAP |
CAN |
HANA |
108.2 |
109.5 |
| HAN |
CAN |
HANA |
110.7 |
109.5 |
| CAQ |
CAO |
NAU |
111.5 |
109.4 |
| CAQ |
CAO |
HAO |
108.8 |
109.5 |
| CAQ |
CAO |
HAOA |
108.8 |
109.5 |
| NAU |
CAO |
HAO |
108.8 |
109.5 |
| NAU |
CAO |
HAOA |
108.8 |
109.5 |
| CAO |
NAU |
HNAU |
107.8 |
111.0 |
| HAO |
CAO |
HAOA |
110.1 |
109.5 |
| NBD |
CAP |
HAP |
107.3 |
109.5 |
| NBD |
CAP |
HAPA |
107.3 |
109.4 |
| HAP |
CAP |
HAPA |
111.6 |
109.5 |
| NBD |
CAQ |
HAQ |
109.2 |
109.5 |
| NBD |
CAQ |
HAQA |
109.2 |
109.5 |
| CAQ |
NBD |
CAX |
117.2 |
111.0 |
| HAQ |
CAQ |
HAQA |
109.7 |
109.5 |
| NAR |
CBA |
CBB |
121.6 |
119.8 |
| NAS |
CBC |
CAZ |
135.1 |
132.3 |
| NAS |
CBC |
NBE |
119.6 |
120.9 |
| CAZ |
CAY |
CBB |
125.4 |
121.4 |
| CAY |
CBB |
CBA |
119.8 |
118.5 |
Torsion Angles for LDN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAB |
CAA |
CAI |
HAA |
180.0 |
179.7 |
| CAI |
CAA |
CAB |
HAB |
182.4 |
180.3 |
| CAI |
CAA |
CAB |
HAA |
180.0 |
180.3 |
| CAJ |
CAB |
CAA |
HAB |
180.0 |
180.0 |
| HAA |
CAA |
CAB |
HAB |
2.4 |
0.0 |
| CAJ |
CAB |
CAA |
HAA |
182.4 |
180.0 |
| CAA |
CAB |
CAJ |
HAB |
180.0 |
180.0 |
| HAB |
CAB |
CAA |
HAA |
2.4 |
0.0 |
| CAD |
CAC |
NAR |
HAC |
180.0 |
178.9 |
| NAR |
CAC |
CAD |
CAY |
0.5 |
1.1 |
| NAR |
CAC |
CAD |
HAD |
180.5 |
179.9 |
| CAC |
NAR |
CBA |
CBB |
358.9 |
0.6 |
| NAR |
CAC |
CAD |
HAC |
180.0 |
181.1 |
| CAD |
CAC |
NAR |
CBA |
0.9 |
358.9 |
| CAY |
CAD |
CAC |
HAD |
180.0 |
181.1 |
| CAC |
CAD |
CAY |
CBB |
358.3 |
359.4 |
| CAC |
CAD |
CAY |
CAZ |
183.4 |
180.0 |
| CAD |
CAC |
HAC |
NAR |
180.0 |
181.0 |
| HAC |
CAC |
NAR |
CBA |
180.9 |
180.0 |
| HAC |
CAC |
CAD |
CAY |
180.5 |
180.0 |
| HAC |
CAC |
CAD |
HAD |
0.5 |
358.9 |
| CAY |
CAD |
CAC |
NAR |
0.5 |
1.1 |
| CAY |
CAD |
CAC |
HAC |
180.5 |
180.0 |
| CAC |
CAD |
CAY |
HAD |
180.0 |
178.9 |
| CAZ |
CAY |
CAD |
CBB |
185.1 |
180.5 |
| CAD |
CAY |
CBB |
CBA |
1.5 |
0.1 |
| HAD |
CAD |
CAC |
NAR |
180.5 |
179.9 |
| HAD |
CAD |
CAC |
HAC |
0.5 |
358.9 |
| CAC |
CAD |
HAD |
CAY |
180.0 |
181.1 |
| HAD |
CAD |
CAY |
CBB |
178.3 |
180.6 |
| HAD |
CAD |
CAY |
CAZ |
3.4 |
1.1 |
| CAG |
CAE |
CAV |
HAE |
180.0 |
179.6 |
| CAV |
CAE |
CAG |
HAG |
178.6 |
180.3 |
| CAV |
CAE |
CAG |
HAE |
180.0 |
180.4 |
| CAX |
CAG |
CAE |
HAG |
180.0 |
180.1 |
| HAE |
CAE |
CAG |
HAG |
358.6 |
359.9 |
| CAF |
CAV |
CAE |
HAE |
181.8 |
180.3 |
| CAH |
CAF |
CAV |
HAF |
180.0 |
179.4 |
| CAV |
CAF |
CAH |
CAX |
0.1 |
0.9 |
| CAV |
CAF |
CAH |
HAH |
180.1 |
180.0 |
| CAK |
CAW |
CAV |
CAF |
339.7 |
295.0 |
| CAV |
CAF |
CAH |
HAF |
180.0 |
180.6 |
| CAX |
CAH |
CAF |
HAH |
180.0 |
180.9 |
| CAF |
CAH |
CAX |
NBD |
176.9 |
180.0 |
| CAH |
CAF |
HAF |
CAV |
180.0 |
180.6 |
| HAF |
CAF |
CAH |
CAX |
180.1 |
180.2 |
| HAF |
CAF |
CAH |
HAH |
0.1 |
359.4 |
| CAX |
CAG |
CAE |
HAE |
178.6 |
180.0 |
| CAE |
CAG |
CAX |
HAG |
180.0 |
179.9 |
| CAF |
CAH |
CAX |
CAG |
0.4 |
359.5 |
| HAG |
CAG |
CAE |
HAE |
358.6 |
359.9 |
| CAX |
CAH |
CAF |
CAV |
0.1 |
0.9 |
| CAX |
CAH |
CAF |
HAF |
180.1 |
180.2 |
| CAF |
CAH |
CAX |
HAH |
180.0 |
179.1 |
| CAH |
CAX |
CAG |
HAG |
180.3 |
180.0 |
| CAQ |
NBD |
CAX |
CAH |
22.8 |
180.0 |
| HAH |
CAH |
CAF |
CAV |
180.1 |
180.0 |
| HAH |
CAH |
CAF |
HAF |
0.1 |
359.4 |
| CAF |
CAH |
HAH |
CAX |
180.0 |
180.9 |
| HAH |
CAH |
CAX |
NBD |
356.9 |
0.8 |
| CBA |
CAI |
CAA |
HAA |
178.4 |
180.3 |
| CAC |
NAR |
CBA |
CAI |
178.9 |
180.0 |
| HAI |
CAI |
CAA |
HAA |
358.4 |
0.2 |
| CBB |
CAJ |
CAB |
HAB |
177.6 |
180.0 |
| CAD |
CAY |
CBB |
CAJ |
182.1 |
179.7 |
| HAJ |
CAJ |
CAB |
HAB |
357.6 |
360.0 |
| CAW |
CAK |
NAS |
HAK |
180.0 |
180.3 |
| NAS |
CAK |
CAW |
CAM |
2.4 |
359.7 |
| NAS |
CAK |
CAW |
CAV |
179.5 |
179.8 |
| NAS |
CAK |
CAW |
HAK |
180.0 |
179.7 |
| CAK |
CAW |
CAM |
HAM |
178.0 |
180.0 |
| NAS |
CAK |
HAK |
CAW |
180.0 |
180.3 |
| HAK |
CAK |
CAW |
CAM |
182.4 |
180.0 |
| HAK |
CAK |
CAW |
CAV |
359.6 |
0.0 |
| CAD |
CAY |
CAZ |
CAL |
45.1 |
64.9 |
| NAT |
CAL |
CAZ |
HAL |
180.0 |
179.9 |
| CAZ |
CAL |
NAT |
HAL |
180.0 |
180.1 |
| CAM |
CAW |
CAK |
HAK |
182.4 |
180.0 |
| CAK |
CAW |
CAM |
CAV |
177.3 |
180.0 |
| NBE |
CAM |
CAW |
HAM |
180.0 |
180.5 |
| CAW |
CAM |
NBE |
HAM |
180.0 |
179.5 |
| CAP |
CAN |
NAU |
HAN |
240.0 |
120.0 |
| CAP |
CAN |
NAU |
HANA |
120.0 |
240.0 |
| HAN |
CAN |
NAU |
HANA |
240.0 |
120.0 |
| NAU |
CAN |
CAP |
HAN |
120.0 |
240.0 |
| NAU |
CAN |
CAP |
HANA |
240.0 |
119.9 |
| HAN |
CAN |
CAP |
HANA |
120.0 |
239.9 |
| NAU |
CAN |
HAN |
HANA |
118.4 |
240.0 |
| CAP |
CAN |
HAN |
HANA |
241.6 |
120.1 |
| NAU |
CAN |
HANA |
HAN |
241.6 |
120.0 |
| CAP |
CAN |
HANA |
HAN |
118.4 |
239.9 |
| NAU |
CAO |
CAQ |
HAO |
240.0 |
240.0 |
| NAU |
CAO |
CAQ |
HAOA |
120.0 |
120.0 |
| CAQ |
CAO |
NAU |
HNAU |
306.1 |
176.8 |
| HAO |
CAO |
CAQ |
HAOA |
240.0 |
239.9 |
| CAO |
NAU |
CAN |
HAN |
84.1 |
299.3 |
| CAO |
NAU |
CAN |
HANA |
204.1 |
179.3 |
| CAQ |
CAO |
NAU |
HAO |
120.0 |
120.0 |
| CAQ |
CAO |
NAU |
HAOA |
240.0 |
240.0 |
| HAO |
CAO |
NAU |
HAOA |
120.0 |
120.1 |
| CAQ |
CAO |
HAO |
NAU |
238.4 |
240.1 |
| CAQ |
CAO |
HAO |
HAOA |
119.2 |
120.1 |
| NAU |
CAO |
HAO |
HAOA |
240.8 |
240.0 |
| HAO |
CAO |
NAU |
HNAU |
186.1 |
56.8 |
| CAQ |
CAO |
HAOA |
NAU |
121.6 |
119.9 |
| CAQ |
CAO |
HAOA |
HAO |
240.8 |
239.9 |
| NAU |
CAO |
HAOA |
HAO |
119.2 |
120.0 |
| HAOA |
CAO |
NAU |
HNAU |
66.1 |
296.8 |
| CAH |
CAX |
NBD |
CAP |
214.0 |
56.2 |
| NBD |
CAP |
CAN |
HAN |
236.3 |
61.5 |
| NBD |
CAP |
CAN |
HANA |
116.3 |
181.6 |
| HAP |
CAP |
NBD |
HAPA |
120.0 |
120.0 |
| HAP |
CAP |
CAN |
HAN |
356.3 |
181.5 |
| HAP |
CAP |
CAN |
HANA |
236.3 |
301.6 |
| NBD |
CAP |
HAP |
HAPA |
242.8 |
240.0 |
| HAPA |
CAP |
CAN |
HAN |
116.3 |
301.6 |
| HAPA |
CAP |
CAN |
HANA |
356.3 |
61.7 |
| NBD |
CAP |
HAPA |
HAP |
117.2 |
120.0 |
| CAH |
CAX |
NBD |
CAQ |
22.8 |
180.0 |
| NBD |
CAQ |
CAO |
NAU |
310.0 |
58.4 |
| NBD |
CAQ |
CAO |
HAO |
70.0 |
178.3 |
| NBD |
CAQ |
CAO |
HAOA |
190.0 |
298.4 |
| CAQ |
NBD |
CAP |
HAP |
256.5 |
299.3 |
| CAQ |
NBD |
CAP |
HAPA |
136.5 |
179.3 |
| HAQ |
CAQ |
NBD |
HAQA |
120.0 |
120.1 |
| HAQ |
CAQ |
CAO |
NAU |
69.9 |
178.4 |
| HAQ |
CAQ |
CAO |
HAO |
190.0 |
298.3 |
| HAQ |
CAQ |
CAO |
HAOA |
310.0 |
58.4 |
| NBD |
CAQ |
HAQ |
HAQA |
240.4 |
239.9 |
| HAQ |
CAQ |
NBD |
CAX |
82.2 |
56.9 |
| HAQA |
CAQ |
CAO |
NAU |
190.0 |
298.4 |
| HAQA |
CAQ |
CAO |
HAO |
310.0 |
58.4 |
| HAQA |
CAQ |
CAO |
HAOA |
70.0 |
178.5 |
| NBD |
CAQ |
HAQA |
HAQ |
119.6 |
120.1 |
| HAQA |
CAQ |
NBD |
CAX |
322.2 |
296.8 |
| CBA |
NAR |
CAC |
HAC |
180.9 |
180.0 |
| NAR |
CBA |
CAI |
HAI |
0.8 |
0.0 |
| CAY |
CBB |
CBA |
NAR |
359.8 |
359.9 |
| CBC |
NAS |
CAK |
CAW |
357.7 |
360.0 |
| CBC |
NAS |
CAK |
HAK |
177.7 |
179.7 |
| NBE |
NAT |
CAL |
HAL |
181.9 |
179.9 |
| NAT |
NBE |
CAM |
HAM |
358.5 |
0.3 |
| NAS |
CBC |
NBE |
NAT |
181.1 |
180.0 |
| HNAU |
NAU |
CAN |
HAN |
204.1 |
63.3 |
| HNAU |
NAU |
CAN |
HANA |
324.1 |
303.2 |
| HNAU |
NAU |
CAO |
HAO |
186.1 |
56.8 |
| HNAU |
NAU |
CAO |
HAOA |
66.1 |
296.8 |
| CAW |
CAV |
CAE |
HAE |
358.5 |
0.3 |
| CAW |
CAV |
CAF |
HAF |
2.1 |
0.1 |
| CAV |
CAW |
CAK |
HAK |
359.6 |
0.0 |
| CAK |
CAW |
CAV |
CAM |
182.9 |
180.0 |
| CAV |
CAW |
CAM |
HAM |
0.8 |
0.0 |
| NBD |
CAX |
CAG |
HAG |
3.9 |
359.5 |
| NBD |
CAX |
CAH |
HAH |
356.9 |
0.8 |
| CAX |
NBD |
CAP |
HAP |
64.6 |
63.2 |
| CAX |
NBD |
CAP |
HAPA |
304.6 |
303.1 |
| CAX |
NBD |
CAQ |
HAQ |
82.2 |
56.9 |
| CAX |
NBD |
CAQ |
HAQA |
322.2 |
296.8 |
| CBB |
CAY |
CAD |
HAD |
178.3 |
180.6 |
| CAD |
CAY |
CBB |
CAZ |
185.5 |
180.5 |
| CAY |
CBB |
CAJ |
HAJ |
1.0 |
359.8 |
| NAR |
CBA |
CBB |
CAY |
359.8 |
359.9 |
| CAZ |
CAY |
CAD |
HAD |
3.4 |
1.1 |
| CAD |
CAY |
CAZ |
CBB |
174.4 |
179.4 |
| CAY |
CAZ |
CAL |
HAL |
358.4 |
0.1 |
| NAS |
CBC |
CAZ |
CAY |
0.9 |
0.0 |
| CAZ |
CAY |
CBB |
CBA |
176.0 |
179.6 |
| CBC |
CAZ |
CAL |
HAL |
179.1 |
180.1 |
| NAS |
CBC |
CAZ |
NBE |
180.4 |
180.0 |
| CBB |
CBA |
CAI |
HAI |
180.8 |
179.5 |
| CBA |
CBB |
CAJ |
HAJ |
181.6 |
179.5 |
| CBC |
NBE |
CAM |
HAM |
181.5 |
180.0 |
| NAS |
CBC |
NBE |
CAZ |
179.7 |
180.0 |