PDB Chemical Component LDA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LDA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	O1	1.221	1.463
N1	CM1	1.443	1.469
N1	CM2	1.442	1.468
N1	C1	1.475	1.469
CM1	HM11	1.116	1.090
CM1	HM12	1.115	1.090
CM1	HM13	1.114	1.090
CM2	HM21	1.116	1.090
CM2	HM22	1.115	1.089
CM2	HM23	1.114	1.091
C1	C2	1.546	1.530
C1	H11	1.116	1.091
C1	H12	1.115	1.090
C2	C3	1.549	1.530
C2	H21	1.115	1.090
C2	H22	1.115	1.090
C3	C4	1.518	1.530
C3	H31	1.115	1.090
C3	H32	1.115	1.090
C4	C5	1.520	1.530
C4	H41	1.115	1.091
C4	H42	1.115	1.090
C5	C6	1.550	1.530
C5	H51	1.116	1.091
C5	H52	1.116	1.090
C6	C7	1.552	1.530
C6	H61	1.115	1.090
C6	H62	1.114	1.090
C7	C8	1.552	1.530
C7	H71	1.115	1.090
C7	H72	1.116	1.090
C8	C9	1.525	1.530
C8	H81	1.115	1.091
C8	H82	1.114	1.090
C9	C10	1.524	1.530
C9	H91	1.115	1.090
C9	H92	1.116	1.089
C10	C11	1.523	1.530
C10	H101	1.116	1.089
C10	H102	1.115	1.090
C11	C12	1.523	1.530
C11	H111	1.114	1.091
C11	H112	1.115	1.090
C12	H121	1.114	1.090
C12	H122	1.116	1.090
C12	H123	1.115	1.090

Bond Angles for LDA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	N1	CM1	109.8	109.5
O1	N1	CM2	109.6	109.5
O1	N1	C1	115.6	109.5
CM1	N1	CM2	96.9	109.5
CM1	N1	C1	111.5	109.5
N1	CM1	HM11	109.8	109.4
N1	CM1	HM12	112.1	109.5
N1	CM1	HM13	112.1	109.5
CM2	N1	C1	111.8	109.5
N1	CM2	HM21	109.6	109.5
N1	CM2	HM22	112.1	109.5
N1	CM2	HM23	112.1	109.5
N1	C1	C2	113.2	109.5
N1	C1	H11	110.9	109.5
N1	C1	H12	110.9	109.5
HM11	CM1	HM12	112.0	109.5
HM11	CM1	HM13	112.1	109.5
HM12	CM1	HM13	98.3	109.5
HM21	CM2	HM22	112.2	109.5
HM21	CM2	HM23	112.2	109.4
HM22	CM2	HM23	98.3	109.5
C2	C1	H11	110.9	109.5
C2	C1	H12	110.9	109.5
C1	C2	C3	110.5	109.5
C1	C2	H21	111.8	109.4
C1	C2	H22	111.8	109.5
H11	C1	H12	99.4	109.4
C3	C2	H21	111.8	109.4
C3	C2	H22	111.8	109.5
C2	C3	C4	103.4	109.5
C2	C3	H31	114.5	109.4
C2	C3	H32	114.5	109.5
H21	C2	H22	98.6	109.5
C4	C3	H31	114.5	109.5
C4	C3	H32	114.5	109.5
C3	C4	C5	114.0	109.5
C3	C4	H41	110.6	109.5
C3	C4	H42	110.5	109.5
H31	C3	H32	95.9	109.5
C5	C4	H41	110.5	109.5
C5	C4	H42	110.5	109.4
C4	C5	C6	103.4	109.5
C4	C5	H51	114.5	109.5
C4	C5	H52	114.5	109.4
H41	C4	H42	99.8	109.4
C6	C5	H51	114.5	109.5
C6	C5	H52	114.5	109.5
C5	C6	C7	109.7	109.5
C5	C6	H61	112.1	109.5
C5	C6	H62	112.1	109.4
H51	C5	H52	95.9	109.4
C7	C6	H61	112.1	109.5
C7	C6	H62	112.1	109.5
C6	C7	C8	109.6	109.5
C6	C7	H71	112.1	109.5
C6	C7	H72	112.2	109.5
H61	C6	H62	98.3	109.5
C8	C7	H71	112.2	109.4
C8	C7	H72	112.2	109.5
C7	C8	C9	104.0	109.5
C7	C8	H81	114.2	109.5
C7	C8	H82	114.3	109.5
H71	C7	H72	98.2	109.5
C9	C8	H81	114.3	109.5
C9	C8	H82	114.3	109.5
C8	C9	C10	110.8	109.4
C8	C9	H91	111.7	109.4
C8	C9	H92	111.7	109.5
H81	C8	H82	96.2	109.4
C10	C9	H91	111.7	109.5
C10	C9	H92	111.7	109.5
C9	C10	C11	105.5	109.4
C9	C10	H101	113.7	109.5
C9	C10	H102	113.7	109.5
H91	C9	H92	98.6	109.5
C11	C10	H101	113.7	109.5
C11	C10	H102	113.7	109.4
C10	C11	C12	109.5	109.5
C10	C11	H111	112.1	109.5
C10	C11	H112	112.1	109.4
H101	C10	H102	96.8	109.5
C12	C11	H111	112.2	109.5
C12	C11	H112	112.2	109.5
C11	C12	H121	109.5	109.5
C11	C12	H122	112.2	109.4
C11	C12	H123	112.2	109.5
H111	C11	H112	98.3	109.4
H121	C12	H122	112.2	109.5
H121	C12	H123	112.2	109.5
H122	C12	H123	98.2	109.5

Torsion Angles for LDA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CM1	N1	O1	CM2	254.6	120.0
CM1	N1	O1	C1	127.2	240.0
O1	N1	CM1	HM11	180.0	180.0
O1	N1	CM1	HM12	305.2	300.0
O1	N1	CM1	HM13	54.7	60.0
CM2	N1	O1	C1	232.5	120.0
O1	N1	CM2	HM21	180.0	299.9
O1	N1	CM2	HM22	305.2	60.0
O1	N1	CM2	HM23	54.8	180.0
O1	N1	C1	C2	293.5	65.0
O1	N1	C1	H11	58.8	305.0
O1	N1	C1	H12	168.2	185.0
O1	N1	CM1	CM2	113.8	240.0
O1	N1	CM1	C1	230.6	120.0
CM2	N1	CM1	C1	116.8	240.0
CM1	N1	CM2	HM21	294.0	179.9
CM1	N1	CM2	HM22	59.2	300.0
CM1	N1	CM2	HM23	168.7	60.0
CM1	N1	C1	C2	167.2	185.0
CM1	N1	C1	H11	292.4	65.0
CM1	N1	C1	H12	41.8	305.0
HM11	CM1	N1	HM12	234.8	240.0
HM11	CM1	N1	HM13	125.3	120.0
HM12	CM1	N1	HM13	250.5	240.0
O1	N1	CM2	CM1	246.0	120.0
O1	N1	CM2	C1	129.5	240.0
CM1	N1	CM2	C1	243.5	120.0
CM2	N1	CM1	HM11	66.2	300.0
CM2	N1	CM1	HM12	191.4	60.0
CM2	N1	CM1	HM13	300.9	180.0
CM2	N1	C1	C2	59.8	305.0
CM2	N1	C1	H11	185.1	185.0
CM2	N1	C1	H12	294.5	65.0
HM21	CM2	N1	HM22	234.8	239.9
HM21	CM2	N1	HM23	125.2	119.9
HM22	CM2	N1	HM23	250.5	240.0
O1	N1	C1	CM1	126.3	240.0
O1	N1	C1	CM2	233.7	120.0
CM1	N1	C1	CM2	107.3	240.0
C1	N1	CM1	HM11	309.5	60.0
C1	N1	CM1	HM12	74.7	180.0
C1	N1	CM1	HM13	184.1	300.0
C1	N1	CM2	HM21	50.5	59.9
C1	N1	CM2	HM22	175.7	180.0
C1	N1	CM2	HM23	285.2	300.0
C2	C1	N1	H11	234.7	120.0
C2	C1	N1	H12	125.3	240.0
N1	C1	C2	C3	178.1	180.0
N1	C1	C2	H21	303.3	60.0
N1	C1	C2	H22	52.9	300.0
H11	C1	N1	H12	250.6	120.0
HM11	CM1	N1	CM2	66.2	300.0
HM11	CM1	N1	C1	309.5	60.0
N1	CM1	HM11	HM12	125.2	120.0
N1	CM1	HM11	HM13	234.7	240.0
HM12	CM1	HM11	HM13	109.4	120.0
HM12	CM1	N1	CM2	191.4	60.0
HM12	CM1	N1	C1	74.7	180.0
N1	CM1	HM12	HM11	236.0	240.0
N1	CM1	HM12	HM13	118.0	120.0
HM11	CM1	HM12	HM13	242.0	240.0
HM13	CM1	N1	CM2	300.9	180.0
HM13	CM1	N1	C1	184.1	300.0
N1	CM1	HM13	HM11	124.1	120.0
N1	CM1	HM13	HM12	242.0	240.0
HM11	CM1	HM13	HM12	117.9	120.0
HM21	CM2	N1	C1	50.5	59.9
N1	CM2	HM21	HM22	125.2	120.1
N1	CM2	HM21	HM23	234.8	240.0
HM22	CM2	HM21	HM23	109.6	120.0
HM22	CM2	N1	C1	175.7	180.0
N1	CM2	HM22	HM21	236.2	240.0
N1	CM2	HM22	HM23	118.1	120.0
HM21	CM2	HM22	HM23	241.9	240.1
HM23	CM2	N1	C1	285.2	300.0
N1	CM2	HM23	HM21	123.8	120.0
N1	CM2	HM23	HM22	241.9	240.0
HM21	CM2	HM23	HM22	118.1	120.0
N1	C1	C2	H11	125.3	240.0
N1	C1	C2	H12	234.7	120.1
H11	C1	C2	H12	109.4	240.0
C3	C2	C1	H21	234.8	119.9
C3	C2	C1	H22	125.2	240.0
C1	C2	C3	C4	151.4	180.0
C1	C2	C3	H31	276.7	60.1
C1	C2	C3	H32	26.2	300.1
H21	C2	C1	H22	250.4	120.0
N1	C1	H11	C2	233.4	120.0
N1	C1	H11	H12	116.7	240.0
C2	C1	H11	H12	243.3	120.0
H11	C1	C2	C3	52.8	300.0
H11	C1	C2	H21	178.0	180.0
H11	C1	C2	H22	287.6	60.0
N1	C1	H12	C2	126.6	240.0
N1	C1	H12	H11	243.3	120.0
C2	C1	H12	H11	116.7	240.0
H12	C1	C2	C3	303.4	59.9
H12	C1	C2	H21	68.6	300.0
H12	C1	C2	H22	178.2	180.0
C3	C2	C1	H11	52.8	300.0
C3	C2	C1	H12	303.4	59.9
C1	C2	C3	H21	125.2	240.1
C1	C2	C3	H22	234.8	120.1
H21	C2	C3	H22	109.5	240.0
C4	C3	C2	H31	234.7	120.0
C4	C3	C2	H32	125.3	240.0
C2	C3	C4	C5	152.8	180.0
C2	C3	C4	H41	278.0	60.0
C2	C3	C4	H42	27.6	300.0
H31	C3	C2	H32	250.5	120.0
H21	C2	C1	H11	178.0	180.0
H21	C2	C1	H12	68.6	300.0
C1	C2	H21	C3	235.5	120.0
C1	C2	H21	H22	117.8	240.0
C3	C2	H21	H22	242.3	120.0
H21	C2	C3	C4	26.2	300.0
H21	C2	C3	H31	151.4	180.0
H21	C2	C3	H32	260.9	60.0
H22	C2	C1	H11	287.6	60.0
H22	C2	C1	H12	178.2	180.0
C1	C2	H22	C3	124.5	240.0
C1	C2	H22	H21	242.2	120.0
C3	C2	H22	H21	117.7	240.0
H22	C2	C3	C4	276.6	60.0
H22	C2	C3	H31	41.9	300.0
H22	C2	C3	H32	151.4	180.0
C4	C3	C2	H21	26.2	300.0
C4	C3	C2	H22	276.6	60.0
C2	C3	C4	H31	125.3	240.0
C2	C3	C4	H32	234.7	120.0
H31	C3	C4	H32	109.4	240.0
C5	C4	C3	H41	234.8	120.0
C5	C4	C3	H42	125.2	240.0
C3	C4	C5	C6	180.2	180.0
C3	C4	C5	H51	305.5	59.9
C3	C4	C5	H52	54.9	300.0
H41	C4	C3	H42	250.4	120.0
H31	C3	C2	H21	151.4	180.0
H31	C3	C2	H22	41.9	300.0
C2	C3	H31	C4	240.8	120.0
C2	C3	H31	H32	120.4	240.0
C4	C3	H31	H32	239.6	120.0
H31	C3	C4	C5	27.5	300.0
H31	C3	C4	H41	152.7	180.0
H31	C3	C4	H42	262.3	60.0
H32	C3	C2	H21	260.9	60.0
H32	C3	C2	H22	151.4	180.0
C2	C3	H32	C4	119.2	240.0
C2	C3	H32	H31	239.6	120.0
C4	C3	H32	H31	120.4	240.0
H32	C3	C4	C5	278.1	60.0
H32	C3	C4	H41	43.3	300.0
H32	C3	C4	H42	152.9	180.0
C5	C4	C3	H31	27.5	300.0
C5	C4	C3	H32	278.1	60.0
C3	C4	C5	H41	125.2	239.9
C3	C4	C5	H42	234.8	120.0
H41	C4	C5	H42	109.5	240.1
C6	C5	C4	H51	234.7	120.1
C6	C5	C4	H52	125.2	240.0
C4	C5	C6	C7	103.8	180.0
C4	C5	C6	H61	229.0	60.0
C4	C5	C6	H62	338.5	300.0
H51	C5	C4	H52	250.5	119.9
H41	C4	C3	H31	152.7	180.0
H41	C4	C3	H32	43.3	300.0
C3	C4	H41	C5	232.8	120.1
C3	C4	H41	H42	116.4	240.0
C5	C4	H41	H42	243.6	119.9
H41	C4	C5	C6	54.9	300.1
H41	C4	C5	H51	180.2	180.0
H41	C4	C5	H52	289.7	60.1
H42	C4	C3	H31	262.3	60.0
H42	C4	C3	H32	152.9	180.0
C3	C4	H42	C5	127.2	240.0
C3	C4	H42	H41	243.6	120.0
C5	C4	H42	H41	116.4	240.0
H42	C4	C5	C6	305.4	60.0
H42	C4	C5	H51	70.7	299.9
H42	C4	C5	H52	180.1	180.0
C6	C5	C4	H41	54.9	300.1
C6	C5	C4	H42	305.4	60.0
C4	C5	C6	H51	125.3	240.0
C4	C5	C6	H52	234.7	120.0
H51	C5	C6	H52	109.4	240.0
C7	C6	C5	H61	234.8	120.0
C7	C6	C5	H62	125.3	240.0
C5	C6	C7	C8	180.0	180.0
C5	C6	C7	H71	305.3	60.0
C5	C6	C7	H72	54.8	300.0
H61	C6	C5	H62	250.5	120.0
H51	C5	C4	H41	180.2	180.0
H51	C5	C4	H42	70.7	299.9
C4	C5	H51	C6	240.8	120.1
C4	C5	H51	H52	120.4	240.1
C6	C5	H51	H52	239.7	120.0
H51	C5	C6	C7	338.5	300.0
H51	C5	C6	H61	103.7	180.0
H51	C5	C6	H62	213.2	60.0
H52	C5	C4	H41	289.7	60.1
H52	C5	C4	H42	180.1	180.0
C4	C5	H52	C6	119.2	240.0
C4	C5	H52	H51	239.6	120.0
C6	C5	H52	H51	120.4	240.0
H52	C5	C6	C7	229.1	60.0
H52	C5	C6	H61	354.3	300.0
H52	C5	C6	H62	103.8	180.0
C7	C6	C5	H51	338.5	300.0
C7	C6	C5	H52	229.1	60.0
C5	C6	C7	H61	125.2	240.0
C5	C6	C7	H62	234.7	119.9
H61	C6	C7	H62	109.5	239.9
C8	C7	C6	H71	234.7	119.9
C8	C7	C6	H72	125.3	240.0
C6	C7	C8	C9	218.8	180.0
C6	C7	C8	H81	344.1	60.0
C6	C7	C8	H82	93.6	300.0
H71	C7	C6	H72	250.6	120.0
H61	C6	C5	H51	103.7	180.0
H61	C6	C5	H52	354.3	300.0
C5	C6	H61	C7	236.1	120.0
C5	C6	H61	H62	118.1	240.0
C7	C6	H61	H62	242.0	120.1
H61	C6	C7	C8	54.8	299.9
H61	C6	C7	H71	180.1	180.0
H61	C6	C7	H72	289.5	60.0
H62	C6	C5	H51	213.2	60.0
H62	C6	C5	H52	103.8	180.0
C5	C6	H62	C7	124.0	240.0
C5	C6	H62	H61	242.0	120.0
C7	C6	H62	H61	118.0	240.0
H62	C6	C7	C8	305.3	60.0
H62	C6	C7	H71	70.6	300.1
H62	C6	C7	H72	180.1	180.0
C8	C7	C6	H61	54.8	299.9
C8	C7	C6	H62	305.3	60.0
C6	C7	C8	H71	125.3	240.1
C6	C7	C8	H72	234.7	120.1
H71	C7	C8	H72	109.5	240.0
C9	C8	C7	H81	234.8	120.0
C9	C8	C7	H82	125.3	240.0
C7	C8	C9	C10	164.9	180.0
C7	C8	C9	H91	290.2	60.1
C7	C8	C9	H92	39.7	300.0
H81	C8	C7	H82	250.5	120.0
H71	C7	C6	H61	180.1	180.0
H71	C7	C6	H62	70.6	300.1
C6	C7	H71	C8	236.2	119.9
C6	C7	H71	H72	118.1	239.9
C8	C7	H71	H72	241.9	120.0
H71	C7	C8	C9	93.6	299.9
H71	C7	C8	H81	218.8	180.0
H71	C7	C8	H82	328.3	60.0
H72	C7	C6	H61	289.5	60.0
H72	C7	C6	H62	180.1	180.0
C6	C7	H72	C8	123.8	240.0
C6	C7	H72	H71	242.0	120.0
C8	C7	H72	H71	118.1	240.0
H72	C7	C8	C9	344.1	59.9
H72	C7	C8	H81	109.4	300.0
H72	C7	C8	H82	218.8	180.0
C9	C8	C7	H71	93.6	299.9
C9	C8	C7	H72	344.1	59.9
C7	C8	C9	H81	125.2	240.0
C7	C8	C9	H82	234.7	120.1
H81	C8	C9	H82	109.5	240.0
C10	C9	C8	H91	234.7	120.0
C10	C9	C8	H92	125.3	240.0
C8	C9	C10	C11	111.2	180.0
C8	C9	C10	H101	236.4	60.0
C8	C9	C10	H102	345.8	299.9
H91	C9	C8	H92	250.6	120.0
H81	C8	C7	H71	218.8	180.0
H81	C8	C7	H72	109.4	300.0
C7	C8	H81	C9	240.3	120.0
C7	C8	H81	H82	120.2	240.0
C9	C8	H81	H82	239.8	120.0
H81	C8	C9	C10	39.7	300.0
H81	C8	C9	H91	165.0	180.0
H81	C8	C9	H92	274.4	60.0
H82	C8	C7	H71	328.3	60.0
H82	C8	C7	H72	218.8	180.0
C7	C8	H82	C9	119.7	240.0
C7	C8	H82	H81	239.9	120.0
C9	C8	H82	H81	120.2	240.0
H82	C8	C9	C10	290.2	60.0
H82	C8	C9	H91	55.5	300.0
H82	C8	C9	H92	164.9	180.0
C10	C9	C8	H81	39.7	300.0
C10	C9	C8	H82	290.2	60.0
C8	C9	C10	H91	125.3	240.0
C8	C9	C10	H92	234.8	120.0
H91	C9	C10	H92	109.4	239.9
C11	C10	C9	H101	234.7	120.0
C11	C10	C9	H102	125.3	240.1
C9	C10	C11	C12	152.2	180.0
C9	C10	C11	H111	277.4	60.0
C9	C10	C11	H112	26.9	300.0
H101	C10	C9	H102	250.6	120.1
H91	C9	C8	H81	165.0	180.0
H91	C9	C8	H82	55.5	300.0
C8	C9	H91	C10	235.2	120.0
C8	C9	H91	H92	117.6	240.0
C10	C9	H91	H92	242.4	120.0
H91	C9	C10	C11	345.8	300.0
H91	C9	C10	H101	111.1	180.0
H91	C9	C10	H102	220.5	59.9
H92	C9	C8	H81	274.4	60.0
H92	C9	C8	H82	164.9	180.0
C8	C9	H92	C10	124.8	240.0
C8	C9	H92	H91	242.4	120.0
C10	C9	H92	H91	117.6	239.9
H92	C9	C10	C11	236.4	60.1
H92	C9	C10	H101	1.7	300.0
H92	C9	C10	H102	111.1	180.0
C11	C10	C9	H91	345.8	300.0
C11	C10	C9	H92	236.4	60.1
C9	C10	C11	H101	125.2	240.0
C9	C10	C11	H102	234.7	119.9
H101	C10	C11	H102	109.5	240.0
C12	C11	C10	H111	234.8	120.0
C12	C11	C10	H112	125.2	240.0
C10	C11	C12	H121	180.0	180.0
C10	C11	C12	H122	305.3	300.0
C10	C11	C12	H123	54.7	60.0
H111	C11	C10	H112	250.5	120.0
H101	C10	C9	H91	111.1	180.0
H101	C10	C9	H92	1.7	300.0
C9	C10	H101	C11	239.2	120.0
C9	C10	H101	H102	119.6	240.0
C11	C10	H101	H102	240.3	120.0
H101	C10	C11	C12	27.0	300.0
H101	C10	C11	H111	152.2	180.0
H101	C10	C11	H112	261.7	60.0
H102	C10	C9	H91	220.5	59.9
H102	C10	C9	H92	111.1	180.0
C9	C10	H102	C11	120.8	240.1
C9	C10	H102	H101	240.4	120.1
C11	C10	H102	H101	119.6	240.0
H102	C10	C11	C12	277.5	60.1
H102	C10	C11	H111	42.7	300.0
H102	C10	C11	H112	152.2	180.1
C12	C11	C10	H101	27.0	300.0
C12	C11	C10	H102	277.5	60.1
C10	C11	C12	H111	125.2	240.0
C10	C11	C12	H112	234.8	120.0
H111	C11	C12	H112	109.6	240.0
H121	C12	C11	H122	234.8	240.0
H121	C12	C11	H123	125.3	120.0
H122	C12	C11	H123	250.6	240.0
H111	C11	C10	H101	152.2	180.0
H111	C11	C10	H102	42.7	300.0
C10	C11	H111	C12	236.2	120.0
C10	C11	H111	H112	118.1	240.0
C12	C11	H111	H112	241.8	120.0
H111	C11	C12	H121	54.8	300.0
H111	C11	C12	H122	180.0	60.0
H111	C11	C12	H123	289.5	180.0
H112	C11	C10	H101	261.7	60.0
H112	C11	C10	H102	152.2	180.1
C10	C11	H112	C12	123.8	240.0
C10	C11	H112	H111	241.9	120.0
C12	C11	H112	H111	118.1	240.0
H112	C11	C12	H121	305.2	60.0
H112	C11	C12	H122	70.5	180.0
H112	C11	C12	H123	179.9	300.0
H121	C12	C11	H111	54.8	300.0
H121	C12	C11	H112	305.2	60.0
C11	C12	H121	H122	125.3	120.0
C11	C12	H121	H123	234.7	240.0
H122	C12	H121	H123	109.4	120.0
H122	C12	C11	H111	180.0	60.0
H122	C12	C11	H112	70.5	180.0
C11	C12	H122	H121	236.2	240.0
C11	C12	H122	H123	118.1	120.0
H121	C12	H122	H123	241.9	240.0
H123	C12	C11	H111	289.5	180.0
H123	C12	C11	H112	179.9	300.0
C11	C12	H123	H121	123.8	120.0
C11	C12	H123	H122	241.9	240.0
H121	C12	H123	H122	118.1	120.0