PDB Chemical Component LCS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LCS

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.350	1.318
N1	C6	1.340	1.319
C2	C2A	1.505	1.506
C2	C3	1.421	1.387
C3	O3	1.372	1.360
C3	C4	1.377	1.391
C4	C4A	1.427	1.508
C4	C5	1.425	1.386
C4A	N	1.267	1.465
C5	C6	1.355	1.382
C5	C5A	1.555	1.507
C5A	O4P	1.410	1.429
O4P	P	1.631	1.610
P	O1P	1.476	1.480
P	O2P	1.557	1.610
P	O3P	1.480	1.610
N	CA	1.321	1.281
CA	C	1.377	1.487
CA	CB	1.392	1.514
C	O	1.298	1.215
C	ND	1.299	1.343
ND	OG	1.428	1.410
OG	CB	1.367	1.432
C2A	H2A1	1.100	1.090
C2A	H2A2	1.100	1.090
C2A	H2A3	1.100	1.090
O3	HO3	0.950	0.968
C4A	H4A1	1.100	1.090
C4A	H4A2	1.100	1.090
C6	H6	1.080	1.079
C5A	H5A1	1.100	1.090
C5A	H5A2	1.100	1.090
O2P	HOP2	0.950	0.967
O3P	HOP3	0.950	0.967
ND	HND	1.000	0.969
CB	HB1	1.099	1.091
CB	HB2	1.100	1.090

Bond Angles for LCS

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	124.5	121.8
N1	C2	C2A	117.9	119.7
N1	C2	C3	118.6	120.7
N1	C6	C5	117.6	120.9
N1	C6	H6	121.2	119.6
C2A	C2	C3	123.5	119.7
C2	C2A	H2A1	109.5	109.5
C2	C2A	H2A2	109.4	109.5
C2	C2A	H2A3	109.5	109.5
C2	C3	O3	116.5	120.5
C2	C3	C4	119.0	119.1
O3	C3	C4	124.5	120.4
C3	O3	HO3	109.5	114.0
C3	C4	C4A	122.4	120.8
C3	C4	C5	117.9	118.4
C4A	C4	C5	119.1	120.8
C4	C4A	N	117.6	109.4
C4	C4A	H4A1	106.8	109.4
C4	C4A	H4A2	106.9	109.4
C4	C5	C6	122.1	119.2
C4	C5	C5A	119.4	120.4
C4A	N	CA	122.1	120.0
N	C4A	H4A1	106.9	109.5
N	C4A	H4A2	106.8	109.5
C6	C5	C5A	118.1	120.4
C5	C6	H6	121.2	119.6
C5	C5A	O4P	115.3	109.5
C5	C5A	H5A1	107.5	109.5
C5	C5A	H5A2	107.6	109.5
C5A	O4P	P	118.9	123.0
O4P	C5A	H5A1	107.6	109.4
O4P	C5A	H5A2	107.6	109.5
O4P	P	O1P	107.4	109.5
O4P	P	O2P	107.7	109.4
O4P	P	O3P	106.1	109.4
O1P	P	O2P	111.0	109.5
O1P	P	O3P	116.5	109.5
O2P	P	O3P	107.7	109.5
P	O2P	HOP2	109.5	114.0
P	O3P	HOP3	109.5	114.0
N	CA	C	126.6	127.4
N	CA	CB	121.6	127.5
C	CA	CB	111.8	105.1
CA	C	O	137.5	125.7
CA	C	ND	107.0	108.6
CA	CB	OG	103.4	105.3
CA	CB	HB1	111.6	110.3
CA	CB	HB2	111.5	110.3
O	C	ND	115.5	125.7
C	ND	OG	108.9	111.8
C	ND	HND	125.5	124.1
ND	OG	CB	108.9	109.2
OG	ND	HND	125.6	124.1
OG	CB	HB1	111.5	110.4
OG	CB	HB2	111.5	110.2
H2A1	C2A	H2A2	109.5	109.4
H2A1	C2A	H2A3	109.4	109.5
H2A2	C2A	H2A3	109.5	109.5
H4A1	C4A	H4A2	112.0	109.5
H5A1	C5A	H5A2	111.3	109.5
HB1	CB	HB2	107.3	110.3

Torsion Angles for LCS

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	0.2	0.1
C2	N1	C6	H6	180.2	180.0
C2A	C2	N1	C3	179.7	180.1
N1	C2	C2A	H2A1	360.0	90.0
N1	C2	C2A	H2A2	120.0	209.9
N1	C2	C2A	H2A3	240.0	330.0
N1	C2	C3	O3	181.0	180.1
N1	C2	C3	C4	2.2	0.1
C6	N1	C2	C2A	180.0	179.9
C6	N1	C2	C3	0.3	359.9
C4	C5	C6	N1	356.8	360.0
N1	C6	C5	C5A	184.1	180.0
C5	C6	N1	H6	180.0	180.1
C2A	C2	N1	C6	180.0	179.9
N1	C2	C2A	C3	180.3	179.9
C2A	C2	C3	O3	1.2	0.0
C2A	C2	C3	C4	182.4	180.0
H2A1	C2A	C2	H2A2	240.0	240.1
H2A1	C2A	C2	H2A3	120.0	120.0
H2A2	C2A	C2	H2A3	240.0	240.0
C3	C2	N1	C6	0.3	359.9
N1	C2	C3	C2A	179.7	180.1
C3	C2	C2A	H2A1	179.7	270.1
C3	C2	C2A	H2A2	299.7	30.0
C3	C2	C2A	H2A3	59.8	150.0
O3	C3	C2	C4	178.8	180.0
C2	C3	O3	HO3	180.0	90.0
C2	C3	C4	C4A	183.9	180.0
C2	C3	C4	C5	355.2	0.0
C2	C3	O3	C4	181.3	180.0
O3	C3	C4	C4A	5.2	360.0
O3	C3	C4	C5	176.5	180.0
C2	C3	C4	O3	178.7	180.0
C4	C3	O3	HO3	358.7	270.0
C4A	C4	C3	C5	188.7	180.0
C3	C4	C4A	N	351.2	264.2
C3	C4	C4A	H4A1	111.2	24.2
C3	C4	C4A	H4A2	231.2	144.2
C3	C4	C5	C6	5.5	360.0
C3	C4	C5	C5A	178.1	180.0
C3	C4	C4A	C5	171.2	180.0
C4A	C4	C5	C6	177.1	180.0
C4A	C4	C5	C5A	349.7	360.0
C4	C4A	N	CA	202.9	116.8
N	C4A	C4	H4A1	240.0	240.0
N	C4A	C4	H4A2	120.0	120.0
H4A1	C4A	C4	H4A2	240.0	240.0
N1	C6	C5	C4	356.8	360.0
C3	C4	C5	C4A	188.4	180.0
C5	C4	C4A	N	180.0	84.2
C5	C4	C4A	H4A1	300.0	204.2
C5	C4	C4A	H4A2	60.0	324.2
C6	C5	C4	C5A	187.4	180.0
C4	C5	C6	H6	176.8	180.1
C4	C5	C5A	O4P	79.5	185.2
C4	C5	C5A	H5A1	199.5	305.2
C4	C5	C5A	H5A2	319.5	65.2
N	C4A	C4	C5	180.0	84.2
C4	C4A	N	H4A1	120.0	120.0
C4	C4A	N	H4A2	240.0	240.1
C4A	N	CA	C	175.8	175.3
C4A	N	CA	CB	355.3	354.8
H4A1	C4A	N	H4A2	120.0	120.1
N1	C6	C5	H6	180.0	179.9
C4	C5	C6	C5A	172.7	180.0
C6	C5	C5A	O4P	252.4	5.2
C6	C5	C5A	H5A1	12.4	125.2
C6	C5	C5A	H5A2	132.4	245.2
C4	C5	C5A	C6	187.1	180.0
C5A	C5	C6	H6	4.1	0.1
C5	C5A	O4P	P	199.2	180.0
O4P	C5A	C5	H5A1	240.0	240.0
O4P	C5A	C5	H5A2	120.0	120.0
H5A1	C5A	C5	H5A2	240.0	239.9
C5	C5A	O4P	H5A1	120.0	120.0
C5	C5A	O4P	H5A2	240.0	240.0
C5A	O4P	P	O1P	57.5	305.0
C5A	O4P	P	O2P	177.1	65.0
C5A	O4P	P	O3P	292.3	185.0
H5A1	C5A	O4P	H5A2	120.0	120.0
P	O4P	C5A	H5A1	79.2	60.0
P	O4P	C5A	H5A2	319.2	300.0
O1P	P	O4P	O2P	240.3	240.0
O1P	P	O4P	O3P	125.2	120.0
O2P	P	O4P	O3P	244.9	240.0
O4P	P	O2P	HOP2	242.7	60.0
O4P	P	O3P	HOP3	119.4	180.0
O4P	P	O1P	O2P	117.5	120.0
O4P	P	O1P	O3P	241.3	240.0
O2P	P	O1P	O3P	123.8	120.1
O1P	P	O2P	HOP2	0.0	180.0
O1P	P	O3P	HOP3	360.0	60.0
O4P	P	O2P	O1P	242.7	240.0
O4P	P	O2P	O3P	114.0	119.9
O1P	P	O2P	O3P	231.3	239.9
O2P	P	O3P	HOP3	234.5	299.9
O4P	P	O3P	O1P	119.4	120.0
O4P	P	O3P	O2P	244.9	240.1
O1P	P	O3P	O2P	125.5	120.1
O3P	P	O2P	HOP2	128.7	300.1
CA	N	C4A	H4A1	83.0	356.9
CA	N	C4A	H4A2	323.0	236.7
C	CA	N	CB	180.5	180.4
N	CA	C	O	1.1	359.9
N	CA	C	ND	180.4	179.9
N	CA	CB	OG	181.2	180.0
N	CA	CB	HB1	301.2	299.1
N	CA	CB	HB2	61.2	61.1
N	CA	C	CB	179.5	179.6
C	CA	CB	OG	0.7	359.6
C	CA	CB	HB1	120.7	118.7
C	CA	CB	HB2	240.7	240.8
O	C	CA	ND	180.7	180.0
CA	C	ND	OG	357.9	360.0
CA	C	ND	HND	177.9	180.0
N	CA	CB	C	180.5	180.4
CB	CA	C	O	181.6	180.2
CB	CA	C	ND	0.9	0.3
ND	OG	CB	CA	358.1	0.4
OG	CB	CA	HB1	240.0	240.9
OG	CB	CA	HB2	120.0	118.8
HB1	CB	CA	HB2	240.0	237.9
O	C	CA	CB	181.6	180.2
CA	C	O	ND	179.3	180.0
O	C	ND	OG	177.4	180.0
O	C	ND	HND	357.4	360.0
ND	C	CA	CB	0.9	0.3
CA	C	ND	O	180.5	180.0
C	ND	OG	CB	2.6	359.7
OG	ND	C	HND	180.0	180.0
CA	CB	OG	ND	358.1	0.4
C	ND	OG	HND	180.0	180.0
ND	OG	CB	HB1	238.1	241.4
ND	OG	CB	HB2	118.1	119.3
CA	CB	OG	HB1	120.0	119.1
CA	CB	OG	HB2	240.0	241.1
CB	OG	ND	HND	182.6	179.8
HB1	CB	OG	HB2	120.0	122.0
H2A1	C2A	C2	C3	179.7	270.1
C2	C2A	H2A1	H2A2	120.0	120.0
C2	C2A	H2A1	H2A3	240.0	240.0
H2A2	C2A	H2A1	H2A3	120.0	120.0
H2A2	C2A	C2	C3	299.7	30.0
C2	C2A	H2A2	H2A1	240.0	240.0
C2	C2A	H2A2	H2A3	120.0	120.0
H2A1	C2A	H2A2	H2A3	240.0	240.0
H2A3	C2A	C2	C3	59.8	150.0
C2	C2A	H2A3	H2A1	120.0	120.0
C2	C2A	H2A3	H2A2	240.0	240.0
H2A1	C2A	H2A3	H2A2	120.0	119.9
HO3	O3	C3	C4	358.7	270.0
H4A1	C4A	C4	C5	300.0	204.2
C4	C4A	H4A1	N	233.3	240.0
C4	C4A	H4A1	H4A2	116.7	119.9
H4A1	C4A	N	CA	83.0	356.9
N	C4A	H4A1	H4A2	243.4	239.9
H4A2	C4A	C4	C5	60.0	324.2
C4	C4A	H4A2	N	126.7	120.0
C4	C4A	H4A2	H4A1	243.3	240.1
H4A2	C4A	N	CA	323.0	236.7
N	C4A	H4A2	H4A1	116.7	120.1
N1	C6	H6	C5	180.0	180.1
H6	C6	C5	C5A	4.1	0.1
C5	C5A	H5A1	O4P	235.2	240.0
C5	C5A	H5A1	H5A2	117.6	120.0
H5A1	C5A	O4P	P	79.2	60.0
O4P	C5A	H5A1	H5A2	242.4	240.0
C5	C5A	H5A2	O4P	124.8	120.0
C5	C5A	H5A2	H5A1	242.4	240.0
H5A2	C5A	O4P	P	319.2	300.0
O4P	C5A	H5A2	H5A1	117.6	120.0
HOP2	O2P	P	O3P	128.7	300.1
C	ND	HND	OG	180.0	180.0
HND	ND	OG	CB	182.6	179.8
CA	CB	HB1	OG	244.9	244.0
CA	CB	HB1	HB2	122.5	122.1
OG	CB	HB1	HB2	237.5	238.0
CA	CB	HB2	OG	115.0	115.8
CA	CB	HB2	HB1	237.5	237.9
OG	CB	HB2	HB1	122.5	122.1