PDB Chemical Component LCM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LCM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.400	1.384
C1	C6	1.382	1.386
C2	C3	1.460	1.391
C2	O26	1.329	1.361
C3	C4	1.469	1.400
C3	O25	1.361	1.357
C4	C5	1.392	1.398
C4	C7	1.486	1.475
C5	C6	1.394	1.377
C7	N8	1.342	1.347
C7	O9	1.223	1.216
N8	C10	1.440	1.465
C10	C11	1.538	1.530
C11	C12	1.509	1.531
C12	C13	1.520	1.530
C13	N14	1.434	1.465
N14	C15	1.329	1.347
C15	C16	1.501	1.475
C15	O17	1.197	1.216
C16	C18	1.470	1.400
C16	C22	1.408	1.398
C18	C19	1.457	1.391
C18	O23	1.400	1.358
C19	C20	1.374	1.384
C19	O24	1.325	1.361
C20	C21	1.391	1.386
C21	C22	1.381	1.377
C1	H1	1.080	1.080
C5	H5	1.080	1.080
C6	H6	1.080	1.080
N8	HN8	1.000	0.970
C10	H10	1.100	1.089
C10	H10A	1.100	1.089
C11	H11	1.100	1.090
C11	H11A	1.100	1.090
C12	H12	1.100	1.089
C12	H12A	1.100	1.090
C13	H13	1.100	1.090
C13	H13A	1.100	1.089
N14	HN14	1.000	0.970
C20	H20	1.080	1.080
C21	H21	1.080	1.080
C22	H22	1.080	1.080
O23	HO23	0.950	0.967
O24	HO24	0.950	0.966
O25	HO25	0.950	0.966
O26	HO26	0.950	0.966

Bond Angles for LCM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	119.2	120.3
C1	C2	C3	121.3	120.1
C1	C2	O26	121.6	120.0
C2	C1	H1	120.4	119.8
C1	C6	C5	122.2	120.4
C6	C1	H1	120.4	119.9
C1	C6	H6	118.9	119.8
C3	C2	O26	117.2	120.0
C2	C3	C4	116.9	119.6
C2	C3	O25	120.8	120.3
C2	O26	HO26	109.5	114.0
C4	C3	O25	122.4	120.1
C3	C4	C5	119.1	119.6
C3	C4	C7	119.8	120.2
C3	O25	HO25	109.5	114.0
C5	C4	C7	120.8	120.2
C4	C5	C6	121.3	120.0
C4	C5	H5	119.4	120.0
C4	C7	N8	112.4	120.0
C4	C7	O9	119.7	119.9
C6	C5	H5	119.4	120.0
C5	C6	H6	118.9	119.9
N8	C7	O9	125.6	120.0
C7	N8	C10	126.6	120.0
C7	N8	HN8	116.7	120.0
N8	C10	C11	102.5	109.4
C10	N8	HN8	116.7	120.0
N8	C10	H10	111.2	109.5
N8	C10	H10A	111.2	109.5
C10	C11	C12	113.9	109.5
C11	C10	H10	111.2	109.5
C11	C10	H10A	111.2	109.5
C10	C11	H11	108.4	109.5
C10	C11	H11A	108.4	109.5
C11	C12	C13	112.3	109.5
C12	C11	H11	108.4	109.5
C12	C11	H11A	108.3	109.5
C11	C12	H12	108.7	109.5
C11	C12	H12A	108.8	109.5
C12	C13	N14	112.5	109.4
C13	C12	H12	108.8	109.5
C13	C12	H12A	108.8	109.5
C12	C13	H13	108.7	109.5
C12	C13	H13A	108.7	109.5
C13	N14	C15	122.7	120.0
N14	C13	H13	108.7	109.5
N14	C13	H13A	108.7	109.5
C13	N14	HN14	118.6	120.0
N14	C15	C16	119.0	120.0
N14	C15	O17	119.8	120.0
C15	N14	HN14	118.7	120.0
C16	C15	O17	121.1	119.9
C15	C16	C18	122.0	120.2
C15	C16	C22	120.2	120.1
C18	C16	C22	117.8	119.6
C16	C18	C19	115.6	119.7
C16	C18	O23	127.4	120.1
C16	C22	C21	123.5	120.0
C16	C22	H22	118.2	120.0
C19	C18	O23	117.0	120.2
C18	C19	C20	123.7	120.0
C18	C19	O24	114.0	120.0
C18	O23	HO23	109.5	114.0
C20	C19	O24	122.3	120.0
C19	C20	C21	119.0	120.3
C19	C20	H20	120.5	119.8
C19	O24	HO24	109.5	114.0
C20	C21	C22	120.4	120.4
C21	C20	H20	120.5	119.9
C20	C21	H21	119.8	119.8
C22	C21	H21	119.8	119.9
C21	C22	H22	118.3	120.0
H10	C10	H10A	109.5	109.5
H11	C11	H11A	109.5	109.5
H12	C12	H12A	109.5	109.4
H13	C13	H13A	109.5	109.5

Torsion Angles for LCM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	C5	359.3	0.0
C6	C1	C2	H1	180.0	180.2
C2	C1	C6	H6	179.4	180.0
C3	C2	C1	O26	181.7	180.0
C1	C2	C3	C4	359.2	0.1
C1	C2	C3	O25	178.8	180.0
C1	C2	O26	HO26	180.0	90.0
C6	C1	C2	C3	0.7	359.9
C6	C1	C2	O26	179.0	180.0
C2	C1	C6	H1	180.0	179.8
C4	C5	C6	C1	0.6	360.0
C1	C6	C5	H5	180.6	180.0
C5	C6	C1	H6	180.0	180.0
C3	C2	C1	C6	0.7	359.9
C1	C2	C3	O26	178.4	180.0
C3	C2	C1	H1	180.7	179.7
C3	C2	O26	HO26	358.4	270.1
C4	C3	C2	O25	180.4	180.1
C2	C3	C4	C5	0.7	359.9
C2	C3	C4	C7	174.6	180.0
C2	C3	O25	HO25	180.0	90.0
O26	C2	C1	C6	179.0	180.0
C1	C2	O26	C3	181.6	180.0
O26	C2	C1	H1	359.0	359.8
O26	C2	C3	C4	180.9	180.0
O26	C2	C3	O25	0.5	359.9
C4	C3	C2	O26	180.9	180.0
C2	C3	C4	O25	179.6	179.9
C4	C3	O25	HO25	359.6	269.9
C5	C4	C3	C7	186.2	180.0
C3	C4	C5	C6	359.3	0.0
C3	C4	C5	H5	179.3	180.0
C3	C4	C7	N8	340.1	180.0
C3	C4	C7	O9	176.2	0.0
O25	C3	C2	O26	0.5	359.9
C2	C3	O25	C4	180.4	180.1
O25	C3	C4	C5	181.1	180.0
O25	C3	C4	C7	355.0	0.0
C1	C6	C5	C4	0.6	360.0
C5	C4	C3	O25	181.1	180.0
C3	C4	C5	C7	173.8	180.0
C5	C4	C7	N8	153.8	360.0
C5	C4	C7	O9	349.9	180.0
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	H6	180.6	180.0
C7	C4	C3	O25	355.0	0.0
C3	C4	C7	C5	186.3	180.0
C7	C4	C5	C6	185.6	180.0
C7	C4	C5	H5	5.6	360.0
N8	C7	C4	O9	163.9	180.0
C4	C7	N8	C10	217.3	180.0
C4	C7	N8	HN8	37.3	359.9
C5	C6	C1	H1	179.3	180.3
C1	C6	C5	H6	180.0	180.0
C6	C5	C4	C7	185.6	180.0
C4	C5	C6	H5	180.0	180.0
C4	C7	N8	O9	197.2	180.0
C7	N8	C10	C11	81.4	180.0
C10	N8	C7	HN8	180.0	180.1
C7	N8	C10	H10	200.3	300.0
C7	N8	C10	H10A	322.5	60.0
C4	C7	O9	N8	161.6	180.0
O9	C7	N8	C10	20.1	360.0
O9	C7	N8	HN8	200.0	179.9
C10	N8	C7	O9	20.1	360.0
C7	N8	C10	HN8	180.0	179.9
N8	C10	C11	C12	136.3	180.0
C11	C10	N8	H10	241.1	240.0
C11	C10	N8	H10A	118.9	120.0
N8	C10	C11	H11	257.0	300.0
N8	C10	C11	H11A	15.7	60.0
H10	C10	N8	H10A	237.8	240.0
C11	C10	N8	HN8	261.4	0.1
N8	C10	C11	H10	118.9	120.0
N8	C10	C11	H10A	241.1	240.0
C10	C11	C12	C13	212.0	180.0
C12	C11	C10	H11	239.3	240.0
C12	C11	C10	H11A	120.6	120.0
C10	C11	C12	H12	332.5	300.0
C10	C11	C12	H12A	91.6	60.0
H10	C10	C11	H10A	122.3	120.0
H11	C11	C10	H11A	241.3	240.0
C12	C11	C10	H10	17.4	60.0
C12	C11	C10	H10A	255.2	300.0
C10	C11	C12	H11	120.7	120.0
C10	C11	C12	H11A	239.3	240.0
C11	C12	C13	N14	71.9	180.0
C13	C12	C11	H12	239.6	240.0
C13	C12	C11	H12A	120.4	120.0
C11	C12	C13	H13	192.3	300.0
C11	C12	C13	H13A	311.4	60.0
H11	C11	C12	H11A	118.7	120.0
H12	C12	C11	H12A	240.9	240.1
C13	C12	C11	H11	91.4	60.0
C13	C12	C11	H11A	332.7	300.0
C11	C12	C13	H12	120.4	120.0
C11	C12	C13	H12A	239.6	240.0
C12	C13	N14	C15	151.2	180.0
N14	C13	C12	H13	239.6	240.0
N14	C13	C12	H13A	120.5	120.0
C12	C13	N14	HN14	331.2	0.0
H12	C12	C13	H12A	119.2	120.0
H13	C13	C12	H13A	240.9	239.9
N14	C13	C12	H12	311.5	60.0
N14	C13	C12	H12A	192.3	300.0
C12	C13	N14	H13	120.5	120.0
C12	C13	N14	H13A	239.5	240.0
C13	N14	C15	C16	177.0	180.0
C13	N14	C15	O17	355.4	0.1
C15	N14	C13	HN14	180.0	179.9
H13	C13	N14	H13A	119.1	120.0
C15	N14	C13	H13	30.7	60.0
C15	N14	C13	H13A	271.6	299.9
C13	N14	C15	HN14	180.0	180.1
C16	C15	N14	O17	181.6	179.9
N14	C15	C16	C18	1.7	180.1
N14	C15	C16	C22	183.2	359.7
N14	C15	C16	O17	178.3	180.1
C16	C15	N14	HN14	357.0	359.9
C18	C16	C15	C22	178.5	180.3
C15	C16	C18	C19	179.9	180.0
C15	C16	C18	O23	2.6	359.9
C15	C16	C22	C21	178.4	179.7
C15	C16	C22	H22	358.4	0.1
N14	C15	O17	C16	181.7	179.9
O17	C15	N14	HN14	175.4	180.0
O17	C15	C16	C18	183.4	360.0
O17	C15	C16	C22	4.8	179.7
C18	C16	C15	O17	183.4	360.0
C15	C16	C18	C22	181.4	179.7
C18	C16	C22	C21	359.8	359.4
C18	C16	C22	H22	179.8	179.8
C19	C18	C16	O23	177.3	180.1
C16	C18	C19	C20	2.3	359.9
C16	C18	C19	O24	183.4	180.0
C16	C18	O23	HO23	180.0	90.0
C22	C16	C15	O17	4.8	179.7
C15	C16	C22	C18	178.6	180.3
C22	C16	C18	C19	358.4	0.3
C22	C16	C18	O23	181.1	180.3
C20	C21	C22	C16	1.5	0.6
C16	C22	C21	H21	181.5	180.3
C21	C22	C16	H22	180.0	179.6
C19	C18	C16	C22	358.4	0.3
C16	C18	C19	O23	182.4	179.9
C19	C18	O23	HO23	2.7	270.0
C20	C19	C18	O24	178.9	180.0
C18	C19	C20	C21	358.9	0.1
C18	C19	C20	H20	178.8	180.0
C18	C19	O24	HO24	180.0	89.9
O23	C18	C16	C22	181.1	180.3
C16	C18	O23	C19	177.3	180.1
O23	C18	C19	C20	179.9	180.0
O23	C18	C19	O24	1.0	0.1
C20	C19	C18	O23	179.9	180.0
C18	C19	C20	O24	181.2	180.0
C20	C19	O24	HO24	1.1	270.0
C19	C20	C21	C22	359.2	359.7
C21	C20	C19	H20	180.0	180.1
C19	C20	C21	H21	179.2	180.0
O24	C19	C18	O23	1.0	0.1
C18	C19	O24	C20	178.9	180.0
O24	C19	C20	C21	177.6	180.0
O24	C19	C20	H20	357.6	360.0
C16	C22	C21	C20	1.5	0.6
C21	C20	C19	O24	177.6	180.0
C19	C20	C21	H20	180.0	179.9
C22	C21	C20	H21	180.0	179.7
C20	C21	C22	H22	181.4	180.2
C16	C22	C21	H22	180.0	180.4
C22	C21	C20	H20	179.2	179.7
C20	C21	C22	H21	180.0	180.3
C2	C1	H1	C6	180.0	180.2
H1	C1	C2	C3	180.7	179.7
H1	C1	C2	O26	359.0	359.8
H1	C1	C6	C5	179.3	180.3
H1	C1	C6	H6	359.4	0.2
H5	C5	C4	C7	5.6	360.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	H6	0.6	0.0
C1	C6	H6	C5	180.0	180.0
H6	C6	C1	H1	359.4	0.2
H6	C6	C5	H5	0.6	0.0
HN8	N8	C7	O9	200.0	179.9
C7	N8	HN8	C10	180.0	180.1
HN8	N8	C10	C11	261.4	0.1
HN8	N8	C10	H10	20.3	120.1
HN8	N8	C10	H10A	142.5	240.1
N8	C10	H10	C11	246.5	240.0
H10	C10	N8	HN8	20.3	120.1
N8	C10	H10	H10A	123.2	120.0
H10	C10	C11	C12	17.4	60.0
C11	C10	H10	H10A	236.7	240.0
H10	C10	C11	H11	138.1	180.0
H10	C10	C11	H11A	256.8	300.0
N8	C10	H10A	C11	113.5	120.0
H10A	C10	N8	HN8	142.5	240.1
N8	C10	H10A	H10	236.8	240.0
H10A	C10	C11	C12	255.2	300.0
C11	C10	H10A	H10	123.3	120.0
H10A	C10	C11	H11	15.9	59.9
H10A	C10	C11	H11A	134.5	180.0
C10	C11	H11	C12	235.9	240.0
H11	C11	C10	H10	138.1	180.0
H11	C11	C10	H10A	15.9	59.9
C10	C11	H11	H11A	118.0	120.0
H11	C11	C12	C13	91.4	60.0
C12	C11	H11	H11A	242.0	240.0
H11	C11	C12	H12	211.8	180.0
H11	C11	C12	H12A	330.9	300.0
C10	C11	H11A	C12	124.0	120.0
H11A	C11	C10	H10	256.8	300.0
H11A	C11	C10	H10A	134.5	180.0
C10	C11	H11A	H11	242.0	240.0
H11A	C11	C12	C13	332.7	300.0
C12	C11	H11A	H11	118.0	120.0
H11A	C11	C12	H12	93.1	60.1
H11A	C11	C12	H12A	212.3	180.0
C11	C12	H12	C13	237.4	240.0
H12	C12	C11	H11	211.8	180.0
H12	C12	C11	H11A	93.1	60.1
C11	C12	H12	H12A	118.7	120.0
H12	C12	C13	N14	311.5	60.0
C13	C12	H12	H12A	241.3	240.0
H12	C12	C13	H13	71.9	180.0
H12	C12	C13	H13A	191.0	300.0
C11	C12	H12A	C13	122.6	120.0
H12A	C12	C11	H11	330.9	300.0
H12A	C12	C11	H11A	212.3	180.0
C11	C12	H12A	H12	241.3	240.0
H12A	C12	C13	N14	192.3	300.0
C13	C12	H12A	H12	118.7	120.0
H12A	C12	C13	H13	312.8	60.0
H12A	C12	C13	H13A	71.9	180.0
C12	C13	H13	N14	237.2	240.0
H13	C13	C12	H12	71.9	180.0
H13	C13	C12	H12A	312.8	60.0
C12	C13	H13	H13A	118.6	120.0
H13	C13	N14	C15	30.7	60.0
N14	C13	H13	H13A	241.4	240.0
H13	C13	N14	HN14	210.7	240.0
C12	C13	H13A	N14	122.8	120.0
H13A	C13	C12	H12	191.0	300.0
H13A	C13	C12	H12A	71.9	180.0
C12	C13	H13A	H13	241.4	240.0
H13A	C13	N14	C15	271.6	299.9
N14	C13	H13A	H13	118.6	120.0
H13A	C13	N14	HN14	91.6	120.0
C13	N14	HN14	C15	180.0	179.9
HN14	N14	C13	H13	210.7	240.0
HN14	N14	C13	H13A	91.6	120.0
HN14	N14	C15	C16	357.0	359.9
HN14	N14	C15	O17	175.4	180.0
H20	C20	C19	O24	357.6	360.0
C19	C20	H20	C21	180.0	180.1
H20	C20	C21	C22	179.2	179.7
H20	C20	C21	H21	359.2	0.1
C20	C21	H21	C22	180.0	179.7
H21	C21	C20	H20	359.2	0.1
H21	C21	C22	H22	1.4	359.9
C16	C22	H22	C21	180.0	179.6
H22	C22	C21	H21	1.4	359.9