PDB Chemical Component LCL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LCL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL1 |
C1 |
1.792 |
1.803 |
| C1 |
CL2 |
1.789 |
1.803 |
| C1 |
C2 |
1.532 |
1.508 |
| C2 |
O2 |
1.236 |
1.213 |
| C2 |
N2 |
1.342 |
1.347 |
| N2 |
C3 |
1.474 |
1.465 |
| C4 |
C3 |
1.531 |
1.530 |
| C4 |
O4 |
1.430 |
1.429 |
| C3 |
C5 |
1.533 |
1.530 |
| C11 |
C10 |
1.392 |
1.383 |
| C11 |
C6 |
1.392 |
1.383 |
| C10 |
C9 |
1.392 |
1.382 |
| C5 |
C6 |
1.393 |
1.507 |
| C5 |
O5 |
1.433 |
1.429 |
| C6 |
C7 |
1.390 |
1.381 |
| O9B |
N9 |
1.466 |
1.218 |
| C9 |
N9 |
1.334 |
1.479 |
| C9 |
C8 |
1.388 |
1.383 |
| C7 |
C8 |
1.391 |
1.383 |
| N9 |
O9A |
1.468 |
1.218 |
| C1 |
H1 |
1.100 |
1.090 |
| N2 |
H2 |
1.000 |
0.971 |
| C3 |
H3 |
1.100 |
1.089 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H5 |
1.100 |
1.090 |
| O4 |
H6 |
0.950 |
0.967 |
| C5 |
H7 |
1.100 |
1.090 |
| O5 |
H8 |
0.950 |
0.967 |
| C7 |
H9 |
1.080 |
1.080 |
| C8 |
H10 |
1.080 |
1.079 |
| C10 |
H13 |
1.080 |
1.080 |
| C11 |
H14 |
1.080 |
1.080 |
Bond Angles for LCL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1 |
C1 |
CL2 |
109.3 |
109.5 |
| CL1 |
C1 |
C2 |
109.5 |
109.4 |
| CL1 |
C1 |
H1 |
107.7 |
109.5 |
| CL2 |
C1 |
C2 |
111.7 |
109.5 |
| CL2 |
C1 |
H1 |
107.7 |
109.5 |
| C1 |
C2 |
O2 |
120.7 |
120.0 |
| C1 |
C2 |
N2 |
115.2 |
120.0 |
| C2 |
C1 |
H1 |
110.8 |
109.4 |
| O2 |
C2 |
N2 |
124.1 |
120.0 |
| C2 |
N2 |
C3 |
121.2 |
120.0 |
| C2 |
N2 |
H2 |
119.4 |
120.0 |
| N2 |
C3 |
C5 |
115.7 |
109.5 |
| C3 |
N2 |
H2 |
119.4 |
120.0 |
| N2 |
C3 |
H3 |
107.5 |
109.5 |
| C4 |
C3 |
C5 |
109.3 |
109.5 |
| C4 |
C3 |
H3 |
106.8 |
109.5 |
| O4 |
C4 |
H4 |
109.6 |
109.4 |
| O4 |
C4 |
H5 |
109.6 |
109.5 |
| C4 |
O4 |
H6 |
109.5 |
114.0 |
| C3 |
C5 |
C6 |
117.5 |
109.5 |
| C3 |
C5 |
O5 |
109.3 |
109.5 |
| C5 |
C3 |
H3 |
106.8 |
109.5 |
| C3 |
C5 |
H7 |
105.9 |
109.5 |
| C11 |
C10 |
H13 |
119.7 |
120.0 |
| O5 |
C5 |
C6 |
109.0 |
109.4 |
| C5 |
C6 |
C7 |
117.0 |
120.0 |
| C6 |
C5 |
H7 |
107.5 |
109.5 |
| O5 |
C5 |
H7 |
107.1 |
109.4 |
| C5 |
O5 |
H8 |
109.5 |
114.1 |
| C6 |
C7 |
C8 |
120.6 |
120.0 |
| C6 |
C7 |
H9 |
119.7 |
120.0 |
| C9 |
N9 |
O9A |
109.9 |
120.0 |
| C9 |
C8 |
H10 |
119.9 |
120.0 |
| C8 |
C7 |
H9 |
119.7 |
119.9 |
| C7 |
C8 |
H10 |
120.0 |
120.1 |
| H4 |
C4 |
H5 |
109.4 |
109.5 |
Torsion Angles for LCL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL2 |
C1 |
CL1 |
C2 |
122.6 |
240.0 |
| CL2 |
C1 |
CL1 |
H1 |
243.2 |
120.1 |
| CL1 |
C1 |
C2 |
O2 |
197.9 |
235.0 |
| CL1 |
C1 |
C2 |
N2 |
16.0 |
55.0 |
| C2 |
C1 |
CL1 |
H1 |
120.6 |
240.0 |
| CL1 |
C1 |
CL2 |
C2 |
238.7 |
120.0 |
| CL1 |
C1 |
CL2 |
H1 |
116.8 |
239.9 |
| CL2 |
C1 |
C2 |
O2 |
76.7 |
355.0 |
| CL2 |
C1 |
C2 |
N2 |
254.8 |
175.0 |
| C2 |
C1 |
CL2 |
H1 |
238.1 |
120.0 |
| CL1 |
C1 |
C2 |
CL2 |
121.2 |
240.0 |
| CL1 |
C1 |
C2 |
H1 |
241.3 |
120.0 |
| CL2 |
C1 |
C2 |
H1 |
120.1 |
240.0 |
| O2 |
C2 |
C1 |
N2 |
181.9 |
180.0 |
| C1 |
C2 |
N2 |
C3 |
182.1 |
180.0 |
| C1 |
C2 |
N2 |
H2 |
2.1 |
360.0 |
| C1 |
C2 |
O2 |
N2 |
177.9 |
180.0 |
| O2 |
C2 |
C1 |
H1 |
316.6 |
115.0 |
| O2 |
C2 |
N2 |
C3 |
0.1 |
0.0 |
| O2 |
C2 |
N2 |
H2 |
180.2 |
180.0 |
| C1 |
C2 |
N2 |
O2 |
182.0 |
180.0 |
| N2 |
C2 |
C1 |
H1 |
134.6 |
295.0 |
| C2 |
N2 |
C3 |
C5 |
255.0 |
205.0 |
| C3 |
N2 |
C2 |
H2 |
180.0 |
180.0 |
| C2 |
N2 |
C3 |
H3 |
14.3 |
325.0 |
| C2 |
N2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
N2 |
C5 |
235.3 |
240.0 |
| C4 |
C3 |
N2 |
H3 |
116.1 |
120.0 |
| N2 |
C3 |
C5 |
C6 |
349.8 |
60.0 |
| N2 |
C3 |
C5 |
O5 |
224.9 |
300.1 |
| C5 |
C3 |
N2 |
H3 |
240.7 |
240.0 |
| N2 |
C3 |
C5 |
H7 |
109.9 |
180.1 |
| N2 |
C3 |
C4 |
C5 |
128.3 |
120.0 |
| C4 |
C3 |
N2 |
H2 |
310.3 |
265.0 |
| N2 |
C3 |
C4 |
H3 |
243.5 |
240.0 |
| C4 |
C3 |
C5 |
C6 |
114.9 |
180.0 |
| C4 |
C3 |
C5 |
O5 |
350.0 |
60.0 |
| C5 |
C3 |
C4 |
H3 |
115.2 |
120.0 |
| C4 |
C3 |
C5 |
H7 |
235.0 |
300.0 |
| O4 |
C4 |
C3 |
C5 |
303.7 |
305.0 |
| O4 |
C4 |
C3 |
H3 |
188.4 |
185.0 |
| H4 |
C4 |
O4 |
H5 |
120.1 |
120.0 |
| C5 |
C3 |
N2 |
H2 |
75.0 |
25.0 |
| N2 |
C3 |
C5 |
H3 |
119.7 |
120.1 |
| C4 |
C3 |
C5 |
H3 |
244.8 |
240.0 |
| O5 |
C5 |
C3 |
C6 |
235.1 |
240.0 |
| C3 |
C5 |
C6 |
C7 |
166.7 |
100.0 |
| C6 |
C5 |
C3 |
H7 |
239.9 |
240.0 |
| O5 |
C5 |
C3 |
H7 |
115.0 |
120.0 |
| C3 |
C5 |
O5 |
H8 |
180.0 |
59.9 |
| C11 |
C6 |
C5 |
H7 |
224.0 |
159.7 |
| C11 |
C6 |
C7 |
H9 |
180.9 |
180.2 |
| C10 |
C9 |
C8 |
H10 |
179.7 |
180.0 |
| C3 |
C5 |
C6 |
O5 |
235.0 |
240.0 |
| C6 |
C5 |
C3 |
H3 |
230.2 |
300.0 |
| C3 |
C5 |
C6 |
H7 |
119.2 |
120.0 |
| O5 |
C5 |
C6 |
H7 |
244.3 |
240.0 |
| C6 |
C5 |
O5 |
H8 |
50.3 |
300.0 |
| C5 |
C6 |
C7 |
C8 |
177.6 |
180.0 |
| C5 |
C6 |
C7 |
H9 |
357.6 |
360.0 |
| C3 |
C5 |
O5 |
C6 |
129.7 |
120.0 |
| O5 |
C5 |
C3 |
H3 |
105.3 |
180.0 |
| C3 |
C5 |
O5 |
H7 |
245.7 |
239.9 |
| O5 |
C5 |
C6 |
C7 |
291.8 |
220.0 |
| C6 |
C5 |
O5 |
H7 |
116.0 |
120.0 |
| C7 |
C6 |
C5 |
H7 |
47.5 |
340.0 |
| C8 |
C7 |
C6 |
H9 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
H10 |
179.4 |
180.0 |
| N9 |
C9 |
C8 |
H10 |
8.7 |
0.0 |
| C9 |
C8 |
C7 |
H9 |
179.4 |
180.0 |
| C7 |
C8 |
C9 |
H10 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
H9 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H10 |
180.0 |
180.0 |
| CL1 |
C1 |
H1 |
CL2 |
242.2 |
120.1 |
| CL1 |
C1 |
H1 |
C2 |
119.7 |
240.0 |
| CL2 |
C1 |
H1 |
C2 |
237.6 |
120.0 |
| H1 |
C1 |
C2 |
O2 |
316.6 |
115.0 |
| H1 |
C1 |
C2 |
N2 |
134.6 |
295.0 |
| C2 |
N2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
N2 |
C3 |
C5 |
75.0 |
25.0 |
| H2 |
N2 |
C3 |
H3 |
194.3 |
145.0 |
| N2 |
C3 |
H3 |
C5 |
235.2 |
240.0 |
| H3 |
C3 |
N2 |
H2 |
194.3 |
145.0 |
| C4 |
C3 |
H3 |
C5 |
116.9 |
120.0 |
| H3 |
C3 |
C5 |
C6 |
230.2 |
300.0 |
| H3 |
C3 |
C5 |
O5 |
105.3 |
180.0 |
| H3 |
C3 |
C5 |
H7 |
350.2 |
60.0 |
| H4 |
C4 |
C3 |
C5 |
63.6 |
65.0 |
| H4 |
C4 |
C3 |
H3 |
308.4 |
305.0 |
| O4 |
C4 |
H4 |
H5 |
239.8 |
240.0 |
| H4 |
C4 |
O4 |
H6 |
60.0 |
60.0 |
| H5 |
C4 |
C3 |
C5 |
183.7 |
185.0 |
| H5 |
C4 |
C3 |
H3 |
68.5 |
65.0 |
| O4 |
C4 |
H5 |
H4 |
120.2 |
120.0 |
| H5 |
C4 |
O4 |
H6 |
299.9 |
300.1 |
| H6 |
O4 |
C4 |
H4 |
60.0 |
60.0 |
| H6 |
O4 |
C4 |
H5 |
299.9 |
300.1 |
| C3 |
C5 |
H7 |
C6 |
233.6 |
240.0 |
| C3 |
C5 |
H7 |
O5 |
116.6 |
120.0 |
| H7 |
C5 |
C3 |
H3 |
350.2 |
60.0 |
| O5 |
C5 |
H7 |
C6 |
117.0 |
119.9 |
| H7 |
C5 |
C6 |
C7 |
47.5 |
340.0 |
| H7 |
C5 |
O5 |
H8 |
294.3 |
180.0 |
| H8 |
O5 |
C5 |
C6 |
50.3 |
300.0 |
| H8 |
O5 |
C5 |
H7 |
294.3 |
180.0 |
| C6 |
C7 |
H9 |
C8 |
180.0 |
180.0 |
| H9 |
C7 |
C8 |
H10 |
359.4 |
360.0 |
| H10 |
C8 |
C7 |
H9 |
359.4 |
360.0 |
| H14 |
C11 |
C10 |
H13 |
359.4 |
359.8 |