PDB Chemical Component LCG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LCG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.479 1.480
P O5' 1.613 1.610
P OP2 1.479 1.610
P OP3 1.612 1.609
O5' C5' 1.416 1.428
C5' C4' 1.534 1.530
C5' H5' 1.090 1.089
C5' H5'' 1.090 1.090
C3' C2' 1.524 1.573
C3' C4' 1.525 1.572
C3' O3' 1.422 1.430
C3' H3' 1.092 1.091
C6' C4' 1.541 1.561
C6' O2' 1.427 1.441
C6' H6'1 1.095 1.089
C6' H6'2 1.090 1.090
N9 C8 1.378 1.364
N9 C4 1.376 1.369
N9 C1' 1.487 1.464
C8 N7 1.303 1.301
C8 H8 1.082 1.080
C4 C5 1.377 1.398
C4 N3 1.365 1.338
N7 C5 1.391 1.356
C5 C6 1.433 1.415
C6 O6 1.229 1.219
C6 N1 1.394 1.351
C2' C1' 1.534 1.560
C2' O2' 1.430 1.455
C2' H2' 1.089 1.091
C4' O4' 1.431 1.456
C1' O4' 1.422 1.441
C1' H1' 1.092 1.090
C2 N1 1.380 1.362
C2 N2 1.331 1.372
C2 N3 1.344 1.314
N1 H1 1.009 0.969
OP2 HOP2 0.950 0.968
N2 H21 1.014 0.970
N2 H22 1.008 0.970
O3' HO3' 0.950 0.967
OP3 HOP3 0.950 0.967

Bond Angles for LCG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P O5' 108.5 109.4
OP1 P OP2 119.8 109.4
OP1 P OP3 107.9 109.5
O5' P OP2 107.8 109.5
O5' P OP3 103.9 109.5
P O5' C5' 122.4 106.8
OP2 P OP3 107.8 109.5
P OP2 HOP2 119.8 106.8
P OP3 HOP3 107.9 106.8
O5' C5' C4' 108.4 109.5
O5' C5' H5' 110.1 109.5
O5' C5' H5'' 109.7 109.5
C4' C5' H5' 109.7 109.5
C4' C5' H5'' 109.5 109.5
C5' C4' C3' 114.9 117.4
C5' C4' C6' 115.6 116.4
C5' C4' O4' 111.9 116.3
H5' C5' H5'' 109.5 109.4
C2' C3' C4' 88.3 93.2
C2' C3' O3' 114.2 112.6
C2' C3' H3' 113.3 112.6
C3' C2' C1' 101.0 99.0
C3' C2' O2' 105.3 101.1
C3' C2' H2' 114.6 116.7
C4' C3' O3' 115.2 112.6
C4' C3' H3' 111.9 112.5
C3' C4' C6' 100.1 99.0
C3' C4' O4' 104.3 101.2
O3' C3' H3' 112.0 112.1
C3' O3' HO3' 115.2 106.8
C4' C6' O2' 101.4 105.3
C4' C6' H6'1 114.2 110.3
C4' C6' H6'2 110.0 110.2
C6' C4' O4' 109.0 103.9
O2' C6' H6'1 113.2 110.3
O2' C6' H6'2 109.3 110.3
C6' O2' C2' 105.4 107.0
H6'1 C6' H6'2 108.6 110.3
C8 N9 C4 105.0 107.5
C8 N9 C1' 130.3 126.3
N9 C8 N7 114.0 109.9
N9 C8 H8 124.9 125.1
C4 N9 C1' 124.6 126.3
N9 C4 C5 106.6 106.1
N9 C4 N3 126.5 134.2
N9 C1' C2' 112.7 110.3
N9 C1' O4' 112.9 110.3
N9 C1' H1' 107.9 110.3
N7 C8 H8 121.1 125.0
C8 N7 C5 104.2 109.3
C5 C4 N3 126.9 119.7
C4 C5 N7 110.1 107.3
C4 C5 C6 119.5 118.6
C4 N3 C2 113.2 121.1
N7 C5 C6 130.4 134.1
C5 C6 O6 128.4 120.8
C5 C6 N1 112.6 118.4
O6 C6 N1 118.9 120.8
C6 N1 C2 124.1 120.3
C6 N1 H1 117.0 119.8
C1' C2' O2' 107.7 103.9
C1' C2' H2' 113.3 117.2
C2' C1' O4' 101.2 105.4
C2' C1' H1' 110.7 110.3
O2' C2' H2' 113.8 116.3
C4' O4' C1' 106.2 107.0
O4' C1' H1' 111.5 110.2
N1 C2 N2 116.7 119.0
N1 C2 N3 123.7 121.9
C2 N1 H1 118.9 119.9
N2 C2 N3 119.6 119.0
C2 N2 H21 120.2 120.0
C2 N2 H22 119.0 120.0
H21 N2 H22 120.8 119.9

Torsion Angles for LCG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5' P OP1 OP2 124.2 119.9
O5' P OP1 OP3 248.0 239.9
OP1 P O5' C5' 41.6 60.0
OP2 P OP1 OP3 123.8 120.0
OP1 P OP2 HOP2 180.0 300.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' OP2 228.9 240.1
OP1 P O5' OP3 114.6 120.1
OP2 P O5' OP3 245.7 240.0
O5' P OP2 HOP2 55.4 180.0
O5' P OP3 HOP3 295.1 300.0
P O5' C5' C4' 179.0 180.0
P O5' C5' H5' 59.1 300.0
P O5' C5' H5'' 298.5 60.0
OP1 P OP2 O5' 124.6 119.9
OP1 P OP2 OP3 236.2 240.0
O5' P OP2 OP3 111.6 120.1
OP2 P O5' C5' 172.7 180.0
OP2 P OP3 HOP3 49.3 60.1
OP1 P OP3 O5' 245.0 240.0
OP1 P OP3 OP2 130.7 120.0
O5' P OP3 OP2 245.8 240.0
OP3 P O5' C5' 287.0 300.0
OP3 P OP2 HOP2 303.7 60.0
C5' O5' P OP2 172.7 180.0
C5' O5' P OP3 287.0 300.0
C4' C5' O5' H5' 119.9 240.0
C4' C5' O5' H5'' 240.5 120.0
O5' C5' C4' C3' 59.7 181.0
O5' C5' C4' C6' 175.6 298.1
O5' C5' C4' O4' 301.1 61.1
H5' C5' O5' H5'' 120.6 240.0
O5' C5' C4' H5' 239.8 120.0
O5' C5' C4' H5'' 119.6 240.0
H5' C5' C4' H5'' 239.8 119.9
C2' C3' C4' C5' 181.4 177.2
C5' C4' C3' O3' 65.4 61.1
C5' C4' C3' H3' 295.9 293.3
C3' C4' C5' C6' 244.1 243.0
C3' C4' C5' O4' 118.6 120.0
C5' C4' C6' O2' 192.9 201.1
C5' C4' C6' H6'1 70.9 320.1
C5' C4' C6' H6'2 308.6 82.1
C6' C4' C5' O4' 234.5 237.0
C5' C4' O4' C1' 159.3 166.2
O5' C5' H5' C4' 119.1 240.0
O5' C5' H5' H5'' 239.3 120.0
C4' C5' H5' H5'' 120.2 240.0
H5' C5' C4' C3' 179.9 61.0
H5' C5' C4' C6' 295.8 178.0
H5' C5' C4' O4' 61.3 301.0
O5' C5' H5'' C4' 241.2 120.0
O5' C5' H5'' H5' 120.9 240.0
C4' C5' H5'' H5' 239.7 120.0
H5'' C5' C4' C3' 300.1 301.0
H5'' C5' C4' C6' 56.0 58.1
H5'' C5' C4' O4' 181.5 181.1
C5' C4' C3' C2' 181.4 177.2
C4' C3' C2' O3' 243.0 243.9
C4' C3' C2' H3' 113.1 116.0
C2' C3' C4' C6' 57.0 51.1
C2' C3' C4' O4' 304.3 304.9
O3' C3' C2' H3' 230.1 232.1
C2' C3' O3' HO3' 80.0 61.5
C6' O2' C2' C3' 32.4 37.8
N9 C1' C2' C3' 79.9 86.9
C1' C2' C3' O2' 112.0 106.2
C1' C2' C3' H2' 237.8 233.3
C3' C2' C1' O4' 319.0 327.8
C3' C2' C1' H1' 200.8 208.9
O2' C2' C3' H2' 125.9 127.2
C3' C4' C5' H5' 179.9 61.0
C3' C4' C5' H5'' 300.1 301.0
C5' C4' C3' C6' 124.5 126.1
C5' C4' C3' O4' 237.2 232.3
C2' C3' C4' O3' 116.0 116.1
C2' C3' C4' H3' 245.5 243.9
C4' C3' C2' C1' 56.5 51.1
C4' C3' C2' O2' 304.6 304.9
C4' C3' C2' H2' 178.7 177.7
O3' C3' C4' H3' 129.5 127.8
C4' C3' O3' HO3' 180.0 165.3
C3' C4' C6' O2' 317.0 327.9
C3' C4' C6' H6'1 194.9 86.9
C3' C4' C6' H6'2 72.6 208.9
C6' C4' C3' O4' 112.7 106.2
C3' C4' O4' C1' 34.5 37.8
C2' C3' O3' C4' 259.9 256.2
C2' C3' O3' H3' 130.5 128.2
O3' C3' C2' C1' 173.5 167.2
O3' C3' C2' O2' 61.6 61.0
O3' C3' C2' H2' 295.7 293.8
C4' C3' O3' H3' 230.6 231.9
O3' C3' C4' C6' 300.9 295.0
O3' C3' C4' O4' 188.2 188.8
C2' C3' H3' C4' 97.9 103.7
C2' C3' H3' O3' 229.0 231.9
H3' C3' C2' C1' 303.4 295.1
H3' C3' C2' O2' 191.5 188.9
H3' C3' C2' H2' 65.6 61.7
C4' C3' H3' O3' 131.1 128.1
H3' C3' C4' C6' 171.4 167.2
H3' C3' C4' O4' 58.7 61.0
H3' C3' O3' HO3' 309.4 293.3
C6' C4' C5' H5' 295.8 178.0
C6' C4' C5' H5'' 56.0 58.1
C5' C4' C6' C3' 236.0 233.2
C5' C4' C6' O4' 127.0 129.3
C6' C4' C3' O3' 300.9 295.0
C6' C4' C3' H3' 171.4 167.2
C3' C4' C6' O4' 251.0 256.1
O2' C6' C4' H6'1 122.0 241.0
O2' C6' C4' H6'2 244.4 118.9
C4' C6' O2' C2' 6.7 356.7
H6'1 C6' C4' H6'2 122.3 238.0
C6' C4' O4' C1' 288.3 295.5
C3' C2' O2' C6' 32.4 37.8
C4' C6' O2' H6'1 237.3 119.1
C4' C6' O2' H6'2 116.1 241.1
O2' C6' C4' O4' 66.0 71.8
H6'1 C6' O2' H6'2 238.8 122.0
C1' C2' O2' C6' 285.2 295.5
C6' O2' C2' H2' 158.7 165.3
C4' C6' H6'1 O2' 115.3 244.0
C4' C6' H6'1 H6'2 236.9 122.0
H6'1 C6' C4' O4' 304.0 190.8
O2' C6' H6'1 H6'2 121.6 238.0
H6'1 C6' O2' C2' 129.4 237.6
C4' C6' H6'2 O2' 249.5 115.9
C4' C6' H6'2 H6'1 125.6 237.9
H6'2 C6' C4' O4' 181.6 312.9
O2' C6' H6'2 H6'1 236.1 122.0
H6'2 C6' O2' C2' 250.5 115.6
C4 N9 C8 C1' 176.9 180.0
C8 N9 C4 C5 357.9 359.9
C8 N9 C4 N3 179.1 180.0
C8 N9 C1' C2' 256.8 271.3
C8 N9 C1' O4' 10.7 27.3
C8 N9 C1' H1' 134.4 149.3
N7 C8 N9 H8 181.0 180.0
N9 C8 N7 C5 359.9 0.0
C8 N9 C4 C1' 182.9 180.0
C4 N9 C8 N7 1.4 0.0
C4 N9 C8 H8 180.4 180.0
C4 N9 C1' C2' 80.5 91.3
C4 N9 C1' O4' 194.4 207.3
C4 N9 C1' H1' 318.0 329.3
C5 C4 N9 N3 178.8 179.9
N9 C4 C5 N7 2.1 0.1
N9 C4 C5 C6 182.2 180.0
N9 C4 N3 C2 178.2 180.0
C3' C2' C1' N9 79.9 86.9
C8 N9 C1' C4 176.4 180.0
C1' N9 C8 N7 184.5 180.0
C1' N9 C8 H8 3.5 360.0
C1' N9 C4 C5 175.1 179.9
C1' N9 C4 N3 356.3 0.0
N9 C1' C2' O2' 190.1 190.8
N9 C1' C2' H2' 316.8 320.5
C2' C1' N9 O4' 246.1 244.0
C2' C1' N9 H1' 122.5 122.0
C4' O4' C1' N9 243.3 237.7
O4' C1' N9 H1' 236.4 238.0
N7 C8 N9 C4 1.4 0.0
N7 C8 N9 C1' 184.5 180.0
N9 C8 N7 H8 179.0 180.0
C4 C5 N7 C8 358.8 360.0
C8 N7 C5 C6 178.7 180.0
H8 C8 N9 C4 180.4 180.0
H8 C8 N9 C1' 3.5 360.0
N9 C8 H8 N7 181.1 180.1
H8 C8 N7 C5 180.8 180.0
C5 C4 N9 C1' 175.1 179.9
N9 C4 C5 N3 181.2 180.1
C8 N7 C5 C4 358.8 360.0
C5 C4 N3 C2 359.7 0.1
N7 C5 C4 C6 180.0 180.1
C4 C5 C6 O6 179.1 180.1
C4 C5 C6 N1 359.5 359.7
N3 C4 N9 C1' 356.3 0.0
N9 C4 N3 C5 178.6 179.9
N3 C4 C5 N7 180.9 180.0
N3 C4 C5 C6 1.0 359.9
N1 C2 N3 C4 359.3 0.3
N2 C2 N3 C4 179.1 180.0
C5 N7 C8 H8 180.8 180.0
N7 C5 C4 N3 180.9 180.0
C4 C5 N7 C6 180.0 179.9
N7 C5 C6 O6 359.2 360.0
N7 C5 C6 N1 179.5 179.6
C6 C5 C4 N3 1.0 359.9
C4 C5 C6 N7 180.0 180.1
O6 C6 C5 N1 179.6 180.3
C5 C6 N1 C2 359.5 0.6
C5 C6 N1 H1 179.5 179.9
C5 C6 O6 N1 180.4 179.7
O6 C6 N1 C2 179.9 180.3
O6 C6 N1 H1 359.9 359.6
C5 C6 N1 O6 179.7 180.3
C6 N1 C2 N2 181.3 179.6
C6 N1 C2 N3 1.1 359.3
C2 N1 C6 H1 180.0 180.7
C1' C2' C3' C4' 56.5 51.1
C1' C2' C3' O3' 173.5 167.2
C1' C2' C3' H3' 303.4 295.1
C3' C2' C1' O2' 249.9 256.1
C3' C2' C1' H2' 123.1 126.4
C6' O2' C2' C1' 285.2 295.5
N9 C1' C2' O4' 120.9 119.0
N9 C1' C2' H1' 239.1 238.0
O2' C2' C1' H2' 233.3 230.3
C4' O4' C1' C2' 4.0 356.7
O4' C1' C2' H1' 118.3 119.0
O2' C2' C3' C4' 304.6 304.9
O2' C2' C3' O3' 61.6 61.0
O2' C2' C3' H3' 191.5 188.9
C3' C2' O2' C1' 107.2 102.3
C3' C2' O2' H2' 233.6 232.5
C2' O2' C6' H6'1 129.4 237.6
C2' O2' C6' H6'2 250.5 115.6
C1' C2' O2' H2' 126.4 130.3
O2' C2' C1' O4' 69.2 71.7
O2' C2' C1' H1' 310.9 312.8
H2' C2' C3' C4' 178.7 177.7
H2' C2' C3' O3' 295.7 293.8
H2' C2' C3' H3' 65.6 61.7
C3' C2' H2' C1' 244.7 242.9
C3' C2' H2' O2' 121.3 119.3
C1' C2' H2' O2' 236.6 236.4
H2' C2' C1' O4' 195.9 201.5
H2' C2' C1' H1' 77.7 82.5
O4' C4' C5' H5' 61.3 301.0
O4' C4' C5' H5'' 181.5 181.1
C5' C4' O4' C3' 124.8 128.4
C5' C4' O4' C6' 231.0 230.7
O4' C4' C3' O3' 188.2 188.8
O4' C4' C3' H3' 58.7 61.0
C3' C4' O4' C6' 106.2 102.3
O4' C4' C6' O2' 66.0 71.8
O4' C4' C6' H6'1 304.0 190.8
O4' C4' C6' H6'2 181.6 312.9
N9 C1' O4' C4' 243.3 237.7
C2' C1' O4' C4' 4.0 356.7
C4' O4' C1' H1' 121.6 115.7
N9 C1' O4' C2' 239.3 241.0
N9 C1' O4' H1' 121.6 122.0
O4' C1' C2' O2' 69.2 71.7
O4' C1' C2' H2' 195.9 201.5
C2' C1' O4' H1' 242.3 241.0
N9 C1' H1' C2' 123.7 122.1
N9 C1' H1' O4' 235.5 238.0
H1' C1' C2' O2' 310.9 312.8
H1' C1' C2' H2' 77.7 82.5
C2' C1' H1' O4' 111.8 116.0
C4 N3 C2 N1 359.3 0.3
C6 N1 C2 H1 180.0 179.3
N2 C2 N1 N3 180.2 180.3
N1 C2 N2 H21 0.6 179.6
N1 C2 N2 H22 180.8 359.4
C4 N3 C2 N2 179.1 180.0
N1 C2 N2 N3 179.8 179.7
N2 C2 N1 H1 1.3 0.3
H21 N2 C2 H22 179.9 180.2
N1 C2 N3 N2 180.2 180.3
N3 C2 N1 H1 181.1 180.0
N3 C2 N2 H21 180.8 360.0
N3 C2 N2 H22 0.9 179.8
C6 N1 H1 C2 180.0 180.7
H1 N1 C2 N2 1.3 0.3
H1 N1 C2 N3 181.1 180.0
HOP2 OP2 P OP3 303.7 60.0
H21 N2 C2 N3 180.8 360.0
C2 N2 H21 H22 180.1 179.8
H22 N2 C2 N3 0.9 179.8
C2 N2 H22 H21 179.9 180.2
HO3' O3' C3' H3' 309.4 293.3