PDB Chemical Component LBV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LBV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1A N_A 1.343 1.341
C1A C2A 1.499 1.512
C1B C2B 1.388 1.399
C1B CHB 1.398 1.408
O1B CGB 1.254 1.208
C1C CHC 1.407 1.409
C1D CHD 1.391 1.380
C2A CMA 1.532 1.530
C2A C3A 1.513 1.517
C2B CMB 1.533 1.507
C2C C1C 1.404 1.415
O2C CGC 1.249 1.208
C2D C1D 1.395 1.404
C2D CMD 1.539 1.507
C3A CAA 1.381 1.333
C3B C2B 1.384 1.366
C3B CAB 1.544 1.506
C3C C2C 1.377 1.360
C3C C4C 1.391 1.414
C3D C2D 1.382 1.386
C4A C3A 1.396 1.471
C4A CHB 1.403 1.376
C4B C3B 1.394 1.404
C4B N_B 1.343 1.386
C4C N_C 1.327 1.333
C4D C3D 1.377 1.465
C4D N_D 1.332 1.347
CAA CBA 1.392 1.508
CAC C2C 1.528 1.506
CAC CBC 1.531 1.530
CAD C3D 1.402 1.474
CBB CAB 1.532 1.529
CBB CGB 1.521 1.507
CBD CAD 1.394 1.330
CGB O2B 1.261 1.341
CGC O1C 1.252 1.342
CGC CBC 1.527 1.506
CHC C4B 1.413 1.387
CHD C4C 1.392 1.415
CMC C3C 1.542 1.508
N_A C4A 1.347 1.379
O_A C1A 1.234 1.213
N_B C1B 1.344 1.371
N_C C1C 1.329 1.337
N_D C1D 1.345 1.391
O_D C4D 1.218 1.219
O1C HO1C 0.950 0.967
C2A H2A 1.100 1.089
O2B HO2B 0.950 0.967
CAA HAA1 1.080 1.080
CAB HAB1 1.100 1.090
CAB HAB2 1.100 1.090
CAC HAC1 1.100 1.091
CAC HAC2 1.100 1.091
CAD HAD1 1.080 1.080
CBA HBA1 1.100 1.090
CBA HBA2 1.100 1.090
CBA HBA3 1.099 1.090
CBB HBB1 1.100 1.090
CBB HBB2 1.100 1.090
CBC HBC1 1.100 1.091
CBC HBC2 1.100 1.090
CBD HBD1 1.080 1.080
CBD HBD2 1.080 1.080
CHB HHB1 1.080 1.080
CHC HHC1 1.080 1.080
CHD HHD1 1.080 1.080
CMA HMA1 1.100 1.090
CMA HMA2 1.100 1.089
CMA HMA3 1.100 1.090
CMB HMB1 1.100 1.090
CMB HMB2 1.100 1.090
CMB HMB3 1.100 1.090
CMC HMC1 1.100 1.089
CMC HMC2 1.100 1.090
CMC HMC3 1.100 1.090
CMD HMD1 1.100 1.090
CMD HMD2 1.100 1.090
CMD HMD3 1.100 1.090
N_A HAD 1.000 0.970
N_B HAE 1.000 0.969
N_C HAF 1.000 0.970
N_D HAG 1.000 0.969

Bond Angles for LBV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2A C1A N_A 110.9 108.7
C1A N_A C4A 112.4 112.8
C1A N_A HAD 123.8 123.6
C1A C2A CMA 109.2 110.5
C1A C2A C3A 98.3 104.4
C1A C2A H2A 116.9 110.5
C2B C1B CHB 120.5 125.9
C1B C2B CMB 126.7 125.9
C1B CHB C4A 124.8 120.0
C1B CHB HHB1 117.6 120.0
O1B CGB CBB 116.5 120.0
O1B CGB O2B 126.4 120.0
C2C C1C CHC 122.9 125.9
C1C CHC C4B 123.6 120.1
C1C CHC HHC1 118.2 120.0
C2D C1D CHD 118.0 125.6
C1D CHD C4C 129.1 120.0
C1D CHD HHD1 115.5 120.0
C3A C2A CMA 110.4 110.4
CMA C2A H2A 106.1 110.4
C2A CMA HMA1 109.5 109.5
C2A CMA HMA2 109.4 109.5
C2A CMA HMA3 109.5 109.4
C2A C3A CAA 122.3 127.7
C3A C2A H2A 115.7 110.5
C3B C2B CMB 125.0 125.9
C2B CMB HMB1 109.5 109.5
C2B CMB HMB2 109.5 109.5
C2B CMB HMB3 109.5 109.5
O2C CGC CBC 117.0 120.0
C3D C2D CMD 125.5 126.3
C2D CMD HMD1 109.5 109.5
C2D CMD HMD2 109.5 109.5
C2D CMD HMD3 109.4 109.4
C4A C3A CAA 126.9 127.7
C3A CAA CBA 124.8 120.0
C3A CAA HAA1 117.6 120.0
C4B C3B CAB 127.5 126.1
C3B CAB HAB1 108.6 109.5
C3B CAB HAB2 108.6 109.5
C3C C4C N_C 106.8 108.5
C4A CHB HHB1 117.6 120.0
CHC C4B N_B 132.9 126.1
C4B N_B HAE 124.1 126.0
CHD C4C N_C 127.5 125.8
C4C N_C HAF 124.1 125.2
C4D N_D HAG 125.8 125.4
CBA CAA HAA1 117.6 120.0
CAA CBA HBA1 109.5 109.5
CAA CBA HBA2 109.5 109.4
CAA CBA HBA3 109.5 109.5
CBC CAC HAC1 107.9 109.4
CBC CAC HAC2 107.9 109.4
CAC CBC HBC1 108.7 109.4
CAC CBC HBC2 108.7 109.5
CBB CAB HAB1 108.5 109.4
CBB CAB HAB2 108.5 109.5
CGB CBB HBB1 108.9 109.4
CGB CBB HBB2 108.9 109.5
CBD CAD HAD1 117.2 120.0
CGB O2B HO2B 109.5 117.0
CGC O1C HO1C 109.5 117.0
CGC CBC HBC1 108.7 109.5
CGC CBC HBC2 108.7 109.5
HAB1 CAB HAB2 110.4 109.4
HAC1 CAC HAC2 111.0 109.4
HBA1 CBA HBA2 109.4 109.5
HBA1 CBA HBA3 109.5 109.5
HBA2 CBA HBA3 109.5 109.5
HBB1 CBB HBB2 110.0 109.5
HBC1 CBC HBC2 110.3 109.4
HBD1 CBD HBD2 120.0 120.0
HMA1 CMA HMA2 109.5 109.5
HMA1 CMA HMA3 109.5 109.5
HMA2 CMA HMA3 109.5 109.5
HMB1 CMB HMB2 109.4 109.4
HMB1 CMB HMB3 109.4 109.4
HMB2 CMB HMB3 109.5 109.5
HMC1 CMC HMC2 109.5 109.5
HMC1 CMC HMC3 109.5 109.5
HMC2 CMC HMC3 109.5 109.5
HMD1 CMD HMD2 109.5 109.5
HMD1 CMD HMD3 109.5 109.5
HMD2 CMD HMD3 109.5 109.5

Torsion Angles for LBV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N_A C1A C2A CMA 243.9 241.3
N_A C1A C2A C3A 359.0 360.0
N_A C1A C2A H2A 123.5 118.8
C2A C1A N_A C4A 0.8 0.0
C2A C1A N_A HAD 180.8 179.9
C3A C2A C1A CMA 115.1 118.7
CMA C2A C1A H2A 120.4 122.5
C1A C2A CMA HMA1 180.0 58.3
C1A C2A CMA HMA2 300.0 178.4
C1A C2A CMA HMA3 60.0 298.4
C1A C2A C3A CAA 180.5 180.0
C3A C2A C1A H2A 235.5 241.2
C2B C1B CHB C4A 186.9 195.2
C2B C1B CHB HHB1 6.9 15.3
C3B C2B C1B CMB 179.0 180.0
C1B C2B CMB HMB1 89.4 90.1
C1B C2B CMB HMB2 209.4 210.0
C1B C2B CMB HMB3 329.4 330.1
CHB C1B C2B CMB 2.4 359.9
C4A CHB C1B HHB1 180.0 179.9
O1B CGB CBB HBB1 167.6 240.0
O1B CGB CBB HBB2 47.6 120.0
O1B CGB O2B HO2B 0.0 0.1
C1C CHC C4B N_B 5.0 17.5
C1D CHD C4C N_C 217.5 8.4
CMA C2A C1A N_A 243.9 241.3
C1A C2A CMA C3A 107.1 115.0
C1A C2A CMA H2A 233.2 237.5
CMA C2A C3A CAA 294.7 298.7
C3A C2A CMA H2A 126.1 122.5
HMA1 CMA C2A HMA2 240.0 240.0
HMA1 CMA C2A HMA3 120.0 120.0
HMA2 CMA C2A HMA3 240.0 240.0
C3A C2A C1A N_A 359.0 360.0
C1A C2A C3A CMA 245.9 241.2
C1A C2A C3A H2A 125.3 118.8
CMA C2A C3A H2A 239.5 237.5
C3A C2A CMA HMA1 73.0 303.4
C3A C2A CMA HMA2 193.0 63.4
C3A C2A CMA HMA3 312.9 183.4
C4A C3A C2A CAA 180.4 180.0
C2A C3A CAA CBA 0.5 4.1
C2A C3A CAA HAA1 180.5 184.1
CMB C2B C1B CHB 2.4 359.9
HMB1 CMB C2B HMB2 240.0 240.1
HMB1 CMB C2B HMB3 120.0 120.0
HMB2 CMB C2B HMB3 240.0 239.9
C2C C1C CHC C4B 177.0 187.5
C2C C1C CHC HHC1 357.0 7.6
O2C CGC O1C HO1C 0.0 0.0
O2C CGC CBC HBC1 289.6 240.0
O2C CGC CBC HBC2 169.6 120.0
C2D C1D CHD C4C 190.8 189.3
C2D C1D CHD HHD1 10.8 9.3
CMD C2D C1D CHD 0.7 0.0
HMD1 CMD C2D HMD2 240.0 240.0
HMD1 CMD C2D HMD3 120.0 120.0
HMD2 CMD C2D HMD3 240.0 240.0
CAA C3A C2A CMA 294.7 298.7
CAA C3A C2A H2A 55.2 61.2
CBA CAA C3A HAA1 180.0 180.0
C3A CAA CBA HBA1 180.0 66.9
C3A CAA CBA HBA2 300.0 186.9
C3A CAA CBA HBA3 60.0 306.8
C3B C2B C1B CHB 181.4 180.0
C1B C2B C3B CMB 181.0 180.0
C3B C2B CMB HMB1 270.5 270.0
C3B C2B CMB HMB2 30.5 29.9
C3B C2B CMB HMB3 150.6 150.0
CAB C3B C2B CMB 0.1 0.0
CBB CAB C3B HAB1 240.0 240.0
CBB CAB C3B HAB2 120.0 120.0
HAB1 CAB C3B HAB2 240.0 240.0
C3C C2C C1C CHC 180.1 180.0
C1D CHD C4C C3C 41.7 188.6
CHD C4C C3C N_C 176.5 179.8
C3C C4C N_C HAF 178.8 180.0
C3D C2D C1D CHD 180.2 180.0
C3D C2D CMD HMD1 0.6 270.0
C3D C2D CMD HMD2 120.6 30.0
C3D C2D CMD HMD3 240.6 150.0
C1A N_A C4A C3A 359.9 0.0
C1B CHB C4A C3A 182.8 194.5
C4A C3A C2A CMA 115.1 118.8
C2A C3A C4A CAA 179.6 180.0
C4A C3A C2A H2A 235.6 241.2
C4A C3A CAA CBA 180.0 184.1
C4A C3A CAA HAA1 0.0 4.1
C1A N_A C4A CHB 179.0 179.9
C1B CHB C4A HHB1 180.0 180.1
CHB C4A C3A CAA 0.6 0.1
C1C CHC C4B C3B 184.2 197.8
C4B C3B C2B CMB 179.7 180.0
C4B C3B CAB HAB1 50.0 29.9
C4B C3B CAB HAB2 170.0 149.9
N_B C4B C3B CAB 179.4 180.3
C4D C3D C2D CMD 180.0 180.0
C3A CAA CBA HAA1 180.0 180.0
HBA1 CBA CAA HBA2 240.0 240.0
HBA1 CBA CAA HBA3 120.0 120.1
HBA2 CBA CAA HBA3 240.0 240.0
CAC C2C C1C CHC 359.3 0.0
O2C CGC CBC CAC 49.6 360.0
CGC CBC CAC HBC1 240.0 240.0
CGC CBC CAC HBC2 120.0 120.1
HAC1 CAC CBC HAC2 120.0 119.9
HBC1 CBC CAC HBC2 240.0 240.1
CAD C3D C2D CMD 359.4 360.0
O1B CGB CBB CAB 287.6 359.9
C3B CAB CBB HAB1 120.0 120.0
C3B CAB CBB HAB2 240.0 240.0
HAB1 CAB CBB HAB2 120.0 120.0
O1B CGB CBB O2B 179.3 179.9
CGB CBB CAB HAB1 68.2 60.0
CGB CBB CAB HAB2 308.2 300.1
CBB CGB O2B HO2B 179.2 180.0
HBB1 CBB CGB HBB2 120.0 120.0
O1B CGB O2B CBB 180.8 180.1
CGC CBC CAC HAC1 329.2 60.0
CGC CBC CAC HAC2 209.3 300.1
CAC CBC CGC HBC1 120.0 120.0
CAC CBC CGC HBC2 240.0 240.0
CBC CGC O1C HO1C 179.6 180.0
HBC1 CBC CGC HBC2 120.0 120.0
C1C CHC C4B HHC1 180.0 180.1
CHC C4B N_B HAE 358.9 0.2
C1D CHD C4C HHD1 180.0 180.0
C3C C4C CHD N_C 184.3 180.2
CHD C4C N_C HAF 2.5 0.2
CMC C3C C4C N_C 180.6 180.2
C1A N_A C4A HAD 180.0 179.9
N_A C4A CHB HHB1 183.8 194.6
O_A C1A N_A HAD 0.1 0.2
O_A C1A C2A H2A 304.2 298.5
N_B C1B CHB HHB1 190.0 195.5
N_C C1C CHC HHC1 176.7 187.9
N_D C1D CHD HHD1 191.4 189.7
O_D C4D N_D HAG 359.9 0.2
H2A C2A C1A N_A 123.5 118.8
C1A C2A H2A CMA 122.0 122.5
C1A C2A H2A C3A 244.8 245.0
C3A C2A H2A CMA 237.2 237.5
H2A C2A CMA HMA1 306.8 180.8
H2A C2A CMA HMA2 66.8 300.9
H2A C2A CMA HMA3 186.8 60.9
H2A C2A C3A CAA 55.2 61.2
C3A CAA HAA1 CBA 180.0 180.0
HAA1 CAA CBA HBA1 360.0 246.9
HAA1 CAA CBA HBA2 120.0 6.9
HAA1 CAA CBA HBA3 240.0 126.9
C3B CAB HAB1 HAB2 118.9 120.0
CBB CAB HAB1 HAB2 241.2 240.0
C3B CAB HAB2 HAB1 241.1 240.0
CBB CAB HAB2 HAB1 118.8 119.9
CBC CAC HAC1 HAC2 242.0 240.1
HAC1 CAC CBC HBC1 89.2 180.0
HAC1 CAC CBC HBC2 209.2 299.9
CBC CAC HAC2 HAC1 118.0 119.9
HAC2 CAC CBC HBC1 329.2 60.1
HAC2 CAC CBC HBC2 89.2 180.0
HBA1 CBA CAA HAA1 360.0 246.9
CAA CBA HBA1 HBA2 120.0 119.9
CAA CBA HBA1 HBA3 240.0 240.0
HBA2 CBA HBA1 HBA3 120.0 120.0
HBA2 CBA CAA HAA1 120.0 6.9
CAA CBA HBA2 HBA1 240.0 240.1
CAA CBA HBA2 HBA3 120.0 120.0
HBA1 CBA HBA2 HBA3 240.0 239.9
HBA3 CBA CAA HAA1 240.0 126.9
CAA CBA HBA3 HBA1 120.1 120.0
CAA CBA HBA3 HBA2 240.0 240.1
HBA1 CBA HBA3 HBA2 120.0 120.0
HBB1 CBB CAB HAB1 188.3 180.0
HBB1 CBB CAB HAB2 68.2 60.0
CGB CBB HBB1 HBB2 240.7 240.0
HBB2 CBB CAB HAB1 308.2 300.0
HBB2 CBB CAB HAB2 188.2 180.0
CGB CBB HBB2 HBB1 119.3 119.9
HBC1 CBC CAC HAC1 89.2 180.0
HBC1 CBC CAC HAC2 329.2 60.1
CAC CBC HBC1 HBC2 119.0 120.0
CGC CBC HBC1 HBC2 240.9 240.0
HBC2 CBC CAC HAC1 209.2 299.9
HBC2 CBC CAC HAC2 89.2 180.0
CAC CBC HBC2 HBC1 241.0 240.1
CGC CBC HBC2 HBC1 119.1 120.0
HBD1 CBD CAD HAD1 0.0 5.7
HBD2 CBD CAD HAD1 180.0 185.7
C1B CHB HHB1 C4A 180.0 179.9
C1C CHC HHC1 C4B 180.0 179.9
HHC1 CHC C4B N_B 184.9 197.4
C1D CHD HHD1 C4C 180.0 180.0
HHD1 CHD C4C N_C 37.5 188.4
HMA1 CMA C2A H2A 306.8 180.8
C2A CMA HMA1 HMA2 120.0 120.0
C2A CMA HMA1 HMA3 240.0 240.1
HMA2 CMA HMA1 HMA3 120.0 120.0
HMA2 CMA C2A H2A 66.8 300.9
C2A CMA HMA2 HMA1 240.0 240.0
C2A CMA HMA2 HMA3 120.0 120.0
HMA1 CMA HMA2 HMA3 240.0 240.0
HMA3 CMA C2A H2A 186.8 60.9
C2A CMA HMA3 HMA1 120.0 120.0
C2A CMA HMA3 HMA2 240.0 240.0
HMA1 CMA HMA3 HMA2 120.0 120.0
C2B CMB HMB1 HMB2 120.0 119.9
C2B CMB HMB1 HMB3 240.0 239.9
HMB2 CMB HMB1 HMB3 120.0 120.0
C2B CMB HMB2 HMB1 240.0 240.1
C2B CMB HMB2 HMB3 120.0 120.1
HMB1 CMB HMB2 HMB3 240.0 240.0
C2B CMB HMB3 HMB1 120.0 120.0
C2B CMB HMB3 HMB2 240.0 239.9
HMB1 CMB HMB3 HMB2 120.0 119.9
HMC2 CMC HMC1 HMC3 120.0 120.1
HMC1 CMC HMC2 HMC3 240.0 239.9
HMC1 CMC HMC3 HMC2 120.0 120.1
C2D CMD HMD1 HMD2 120.0 120.0
C2D CMD HMD1 HMD3 240.0 240.0
HMD2 CMD HMD1 HMD3 120.0 120.0
C2D CMD HMD2 HMD1 240.0 240.0
C2D CMD HMD2 HMD3 120.0 120.0
HMD1 CMD HMD2 HMD3 240.0 239.9
C2D CMD HMD3 HMD1 120.0 120.0
C2D CMD HMD3 HMD2 240.0 240.0
HMD1 CMD HMD3 HMD2 120.0 120.0
C1A N_A HAD C4A 180.0 180.1