PDB Chemical Component LBT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LBT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3 |
C3 |
1.459 |
1.429 |
| C3 |
C4 |
1.486 |
1.531 |
| C3 |
C2 |
1.488 |
1.532 |
| C4 |
O4 |
1.419 |
1.429 |
| C4 |
C5 |
1.511 |
1.531 |
| C5 |
C6 |
1.501 |
1.530 |
| C5 |
O5 |
1.412 |
1.429 |
| O2 |
C2 |
1.441 |
1.429 |
| C6 |
O6 |
1.413 |
1.429 |
| C2 |
C1 |
1.526 |
1.530 |
| C1 |
O5 |
1.450 |
1.429 |
| C1 |
O1 |
1.379 |
1.429 |
| O6' |
C6' |
1.404 |
1.429 |
| C6' |
C5' |
1.516 |
1.530 |
| O1 |
C4' |
1.443 |
1.429 |
| C4' |
C5' |
1.512 |
1.531 |
| C4' |
C3' |
1.507 |
1.533 |
| C5' |
O5' |
1.441 |
1.428 |
| O5' |
C1' |
1.467 |
1.429 |
| O3' |
C3' |
1.463 |
1.429 |
| C3' |
C2' |
1.479 |
1.531 |
| C2' |
C1' |
1.506 |
1.532 |
| C2' |
O2' |
1.437 |
1.429 |
| C1' |
O1' |
1.380 |
1.428 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.089 |
| C5 |
H5 |
1.100 |
1.090 |
| C6 |
H6C2 |
1.100 |
1.090 |
| C6 |
H6C1 |
1.100 |
1.090 |
| O2 |
HA |
0.951 |
0.967 |
| O3 |
HB |
0.950 |
0.967 |
| O4 |
HC |
0.950 |
0.967 |
| O6 |
H6 |
0.950 |
0.966 |
| C1' |
H1' |
1.100 |
1.090 |
| C2' |
H2' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.089 |
| C4' |
H4' |
1.101 |
1.090 |
| C5' |
H5' |
1.100 |
1.091 |
| C6' |
H6'2 |
1.100 |
1.090 |
| C6' |
H6'1 |
1.100 |
1.090 |
| O1' |
HD |
0.950 |
0.967 |
| O2' |
HE |
0.950 |
0.967 |
| O3' |
HF |
0.950 |
0.967 |
| O6' |
H6' |
0.950 |
0.968 |
Bond Angles for LBT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C3 |
H3 |
108.8 |
109.6 |
| C3 |
C4 |
O4 |
109.4 |
109.5 |
| C3 |
C4 |
C5 |
111.4 |
109.2 |
| C4 |
C3 |
H3 |
108.5 |
109.5 |
| C3 |
C4 |
H4 |
110.3 |
109.5 |
| C3 |
C2 |
H2 |
108.4 |
109.5 |
| C5 |
C4 |
O4 |
104.4 |
109.5 |
| O4 |
C4 |
H4 |
111.3 |
109.5 |
| C4 |
O4 |
HC |
109.5 |
114.0 |
| C4 |
C5 |
C6 |
118.4 |
109.5 |
| C4 |
C5 |
O5 |
114.6 |
109.4 |
| C5 |
C4 |
H4 |
109.9 |
109.6 |
| C4 |
C5 |
H5 |
101.2 |
109.5 |
| C6 |
C5 |
O5 |
115.4 |
109.5 |
| C5 |
C6 |
O6 |
112.5 |
109.5 |
| C6 |
C5 |
H5 |
101.3 |
109.5 |
| C5 |
C6 |
H6C2 |
108.7 |
109.5 |
| C5 |
C6 |
H6C1 |
108.7 |
109.5 |
| C1 |
O5 |
C5 |
115.2 |
114.1 |
| O5 |
C5 |
H5 |
102.0 |
109.5 |
| O2 |
C2 |
H2 |
109.0 |
109.5 |
| O6 |
C6 |
H6C2 |
108.7 |
109.5 |
| O6 |
C6 |
H6C1 |
108.7 |
109.4 |
| C6 |
O6 |
H6 |
109.5 |
114.0 |
| C2 |
C1 |
O5 |
110.8 |
109.4 |
| C2 |
C1 |
H1 |
109.0 |
109.5 |
| O5 |
C1 |
H1 |
110.1 |
109.5 |
| O6' |
C6' |
H6'2 |
109.5 |
109.5 |
| O6' |
C6' |
H6'1 |
109.5 |
109.4 |
| C6' |
C5' |
O5' |
107.3 |
109.5 |
| C6' |
C5' |
H5' |
108.3 |
109.4 |
| O1 |
C4' |
H4' |
110.3 |
109.5 |
| C4' |
C5' |
O5' |
110.1 |
109.5 |
| C5' |
C4' |
H4' |
109.4 |
109.5 |
| C4' |
C5' |
H5' |
108.3 |
109.4 |
| C4' |
C3' |
H3' |
107.6 |
109.5 |
| O5' |
C5' |
H5' |
109.3 |
109.5 |
| O5' |
C1' |
H1' |
107.4 |
109.5 |
| O3' |
C3' |
H3' |
108.2 |
109.6 |
| C3' |
C2' |
O2' |
110.2 |
109.5 |
| C3' |
C2' |
H2' |
108.4 |
109.6 |
| C2' |
C1' |
O1' |
113.3 |
109.5 |
| C2' |
C1' |
H1' |
106.9 |
109.4 |
| O2' |
C2' |
H2' |
109.0 |
109.5 |
| C2' |
O2' |
HE |
109.5 |
114.0 |
| O1' |
C1' |
H1' |
108.5 |
109.5 |
| C1' |
O1' |
HD |
109.5 |
114.0 |
| H6C1 |
C6 |
H6C2 |
109.5 |
109.4 |
| H6'1 |
C6' |
H6'2 |
109.5 |
109.5 |
Torsion Angles for LBT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C3 |
C4 |
O4 |
55.2 |
56.9 |
| C4 |
C3 |
O3 |
H3 |
118.7 |
120.2 |
| O3 |
C3 |
C4 |
H4 |
292.5 |
296.8 |
| O3 |
C3 |
C2 |
H2 |
304.5 |
303.0 |
| O3 |
C3 |
C4 |
H3 |
241.1 |
239.7 |
| C4 |
C3 |
C2 |
H2 |
66.5 |
63.0 |
| C5 |
C4 |
C3 |
O4 |
114.9 |
119.9 |
| O4 |
C4 |
C3 |
H4 |
122.8 |
120.1 |
| C3 |
C4 |
O4 |
HC |
180.0 |
300.0 |
| C3 |
C4 |
C5 |
C6 |
170.2 |
182.4 |
| C3 |
C4 |
C5 |
O5 |
311.8 |
302.4 |
| C5 |
C4 |
C3 |
H4 |
237.7 |
240.0 |
| C3 |
C4 |
C5 |
H5 |
60.7 |
62.4 |
| O2 |
C2 |
C3 |
H2 |
119.9 |
120.1 |
| C3 |
C2 |
C1 |
O5 |
52.4 |
57.6 |
| C3 |
C2 |
C1 |
H1 |
291.1 |
297.6 |
| C3 |
C4 |
O4 |
C5 |
119.3 |
119.7 |
| O4 |
C4 |
C3 |
H3 |
174.1 |
177.2 |
| C3 |
C4 |
O4 |
H4 |
237.9 |
239.9 |
| O4 |
C4 |
C5 |
C6 |
288.2 |
302.3 |
| O4 |
C4 |
C5 |
O5 |
69.8 |
62.3 |
| C5 |
C4 |
O4 |
H4 |
118.6 |
120.2 |
| O4 |
C4 |
C5 |
H5 |
178.7 |
182.3 |
| C3 |
C4 |
C5 |
O4 |
242.0 |
240.1 |
| C5 |
C4 |
C3 |
H3 |
289.0 |
297.1 |
| C3 |
C4 |
C5 |
H4 |
122.5 |
119.9 |
| O4 |
C4 |
C5 |
H4 |
240.5 |
239.8 |
| C5 |
C4 |
O4 |
HC |
60.7 |
180.3 |
| C6 |
C5 |
C4 |
O5 |
218.4 |
240.0 |
| C4 |
C5 |
C6 |
O6 |
185.9 |
185.0 |
| C6 |
C5 |
C4 |
H5 |
109.5 |
120.0 |
| C4 |
C5 |
C6 |
H6C2 |
306.4 |
305.0 |
| C4 |
C5 |
C6 |
H6C1 |
65.5 |
65.0 |
| C1 |
O5 |
C5 |
C4 |
51.2 |
61.2 |
| O5 |
C5 |
C4 |
H5 |
251.1 |
240.0 |
| C6 |
C5 |
C4 |
O4 |
288.2 |
302.3 |
| C4 |
C5 |
C6 |
O5 |
141.2 |
119.9 |
| C6 |
C5 |
C4 |
H4 |
47.7 |
62.5 |
| C4 |
C5 |
C6 |
H5 |
250.5 |
240.0 |
| C1 |
O5 |
C5 |
C6 |
194.0 |
181.1 |
| O5 |
C5 |
C6 |
H5 |
109.3 |
120.1 |
| O6 |
C6 |
C5 |
H6C2 |
239.6 |
240.0 |
| O6 |
C6 |
C5 |
H6C1 |
120.5 |
120.0 |
| C5 |
C6 |
O6 |
H6 |
180.0 |
180.0 |
| H6C1 |
C6 |
C5 |
H6C2 |
119.1 |
120.0 |
| O5 |
C5 |
C4 |
O4 |
69.8 |
62.3 |
| C4 |
C5 |
O5 |
C6 |
217.3 |
240.1 |
| O5 |
C5 |
C4 |
H4 |
189.3 |
182.4 |
| C4 |
C5 |
O5 |
H5 |
108.4 |
120.0 |
| O5 |
C5 |
C6 |
O6 |
44.7 |
65.1 |
| C6 |
C5 |
O5 |
H5 |
251.2 |
239.9 |
| O5 |
C5 |
C6 |
H6C2 |
165.1 |
185.1 |
| O5 |
C5 |
C6 |
H6C1 |
284.2 |
305.1 |
| C2 |
C1 |
O5 |
C5 |
307.6 |
298.8 |
| C5 |
O5 |
C1 |
H1 |
68.2 |
58.8 |
| C3 |
C2 |
O2 |
H2 |
240.4 |
239.9 |
| O2 |
C2 |
C1 |
O5 |
175.3 |
177.6 |
| O2 |
C2 |
C1 |
H1 |
54.1 |
57.6 |
| O6 |
C6 |
C5 |
O5 |
44.7 |
65.1 |
| O6 |
C6 |
C5 |
H5 |
295.4 |
305.0 |
| C5 |
C6 |
O6 |
H6C2 |
120.5 |
120.0 |
| C5 |
C6 |
O6 |
H6C1 |
239.5 |
240.0 |
| H6C1 |
C6 |
O6 |
H6C2 |
240.9 |
240.0 |
| O5 |
C1 |
C2 |
H1 |
121.2 |
120.0 |
| C4 |
C5 |
O5 |
C1 |
51.2 |
61.2 |
| C6 |
C5 |
O5 |
C1 |
194.0 |
181.1 |
| C1 |
O5 |
C5 |
H5 |
302.8 |
301.2 |
| C2 |
C1 |
O5 |
H1 |
239.4 |
240.0 |
| C1 |
O1 |
C4' |
H4' |
14.6 |
330.1 |
| O6' |
C6' |
C5' |
H5' |
178.1 |
304.9 |
| H6'1 |
C6' |
O6' |
H6'2 |
120.0 |
240.0 |
| C4' |
C5' |
C6' |
O5' |
121.8 |
120.0 |
| C6' |
C5' |
C4' |
H4' |
301.7 |
302.3 |
| C4' |
C5' |
C6' |
H5' |
239.7 |
240.1 |
| O5' |
C5' |
C6' |
H5' |
117.9 |
120.1 |
| O1 |
C4' |
C5' |
O5' |
182.6 |
182.5 |
| C5' |
C4' |
O1 |
H4' |
239.9 |
239.9 |
| O1 |
C4' |
C5' |
H5' |
302.1 |
302.6 |
| O1 |
C4' |
C3' |
H3' |
56.7 |
57.0 |
| C6' |
C5' |
C4' |
O5' |
239.7 |
240.0 |
| C6' |
C5' |
C4' |
H5' |
120.3 |
119.9 |
| O1 |
C4' |
C5' |
H4' |
120.7 |
120.2 |
| C5' |
C4' |
C3' |
H3' |
297.4 |
297.1 |
| O5' |
C5' |
C4' |
H5' |
240.6 |
240.0 |
| O3' |
C3' |
C4' |
H3' |
241.8 |
239.8 |
| C4' |
C3' |
C2' |
O2' |
186.4 |
183.1 |
| C4' |
C3' |
C2' |
H2' |
67.2 |
62.9 |
| C6' |
C5' |
O5' |
H5' |
242.8 |
240.0 |
| O5' |
C5' |
C4' |
H4' |
61.9 |
62.3 |
| C4' |
C5' |
O5' |
H5' |
118.8 |
120.0 |
| C5' |
O5' |
C1' |
H1' |
189.3 |
178.9 |
| C2' |
C1' |
O5' |
H1' |
116.7 |
119.9 |
| O1' |
C1' |
O5' |
H1' |
242.6 |
239.9 |
| O5' |
C1' |
O1' |
HD |
180.0 |
60.0 |
| C4' |
C3' |
O3' |
H3' |
117.8 |
120.2 |
| O3' |
C3' |
C2' |
H2' |
303.3 |
303.0 |
| C3' |
C2' |
C1' |
O1' |
286.5 |
297.6 |
| C3' |
C2' |
C1' |
H1' |
167.1 |
177.6 |
| O2' |
C2' |
C3' |
H2' |
119.2 |
120.2 |
| C3' |
C2' |
O2' |
HE |
180.0 |
179.7 |
| O5' |
C1' |
C2' |
H1' |
243.0 |
240.0 |
| O1' |
C1' |
C2' |
H1' |
119.4 |
120.0 |
| C2' |
C1' |
O1' |
HD |
304.8 |
180.0 |
| C3' |
C2' |
O2' |
H2' |
241.1 |
239.8 |
| O2' |
C2' |
C1' |
O1' |
48.8 |
57.5 |
| O2' |
C2' |
C1' |
H1' |
289.4 |
297.5 |
| O5' |
C1' |
O1' |
H1' |
116.6 |
120.1 |
| C2' |
C1' |
O1' |
H1' |
241.5 |
240.0 |
| H1 |
C1 |
O5 |
C5 |
68.2 |
58.8 |
| C2 |
C1 |
H1 |
O5 |
121.7 |
119.9 |
| H2 |
C2 |
C1 |
O5 |
293.3 |
297.7 |
| H2 |
C2 |
C1 |
H1 |
172.1 |
177.7 |
| H3 |
C3 |
C4 |
O4 |
174.1 |
177.2 |
| H3 |
C3 |
C4 |
C5 |
289.0 |
297.1 |
| H3 |
C3 |
C4 |
H4 |
51.4 |
57.1 |
| H3 |
C3 |
C2 |
H2 |
186.6 |
182.8 |
| C3 |
C4 |
H4 |
O4 |
121.6 |
120.1 |
| C3 |
C4 |
H4 |
C5 |
236.8 |
240.3 |
| H4 |
C4 |
C3 |
H3 |
51.4 |
57.1 |
| C5 |
C4 |
H4 |
O4 |
244.8 |
239.8 |
| H4 |
C4 |
O4 |
HC |
302.2 |
60.1 |
| H4 |
C4 |
C5 |
C6 |
47.7 |
62.5 |
| H4 |
C4 |
C5 |
O5 |
189.3 |
182.4 |
| H4 |
C4 |
C5 |
H5 |
298.2 |
302.4 |
| H5 |
C5 |
C4 |
O4 |
178.7 |
182.3 |
| C4 |
C5 |
H5 |
C6 |
122.3 |
120.0 |
| C4 |
C5 |
H5 |
O5 |
241.6 |
240.1 |
| H5 |
C5 |
C4 |
H4 |
298.2 |
302.4 |
| C6 |
C5 |
H5 |
O5 |
119.3 |
120.1 |
| H5 |
C5 |
C6 |
O6 |
295.4 |
305.0 |
| H5 |
C5 |
C6 |
H6C2 |
55.8 |
65.0 |
| H5 |
C5 |
C6 |
H6C1 |
174.9 |
185.0 |
| H6C2 |
C6 |
C5 |
O5 |
165.1 |
185.1 |
| C5 |
C6 |
H6C2 |
O6 |
237.2 |
240.0 |
| H6C2 |
C6 |
C5 |
H5 |
55.8 |
65.0 |
| C5 |
C6 |
H6C2 |
H6C1 |
118.6 |
120.0 |
| O6 |
C6 |
H6C2 |
H6C1 |
241.4 |
240.0 |
| H6C2 |
C6 |
O6 |
H6 |
59.5 |
60.0 |
| H6C1 |
C6 |
C5 |
O5 |
284.2 |
305.1 |
| C5 |
C6 |
H6C1 |
O6 |
122.8 |
120.0 |
| H6C1 |
C6 |
C5 |
H5 |
174.9 |
185.0 |
| C5 |
C6 |
H6C1 |
H6C2 |
241.4 |
240.0 |
| O6 |
C6 |
H6C1 |
H6C2 |
118.6 |
120.0 |
| H6C1 |
C6 |
O6 |
H6 |
300.5 |
300.0 |
| HA |
O2 |
C2 |
H2 |
299.5 |
299.9 |
| HB |
O3 |
C3 |
H3 |
61.3 |
59.8 |
| HC |
O4 |
C4 |
H4 |
302.2 |
60.1 |
| H6 |
O6 |
C6 |
H6C2 |
59.5 |
60.0 |
| H6 |
O6 |
C6 |
H6C1 |
300.5 |
300.0 |
| C2' |
C1' |
H1' |
O1' |
122.5 |
120.0 |
| H1' |
C1' |
O1' |
HD |
63.3 |
299.9 |
| C3' |
C2' |
H2' |
O2' |
120.0 |
120.2 |
| H2' |
C2' |
C1' |
O1' |
167.0 |
177.7 |
| H2' |
C2' |
C1' |
H1' |
47.6 |
57.7 |
| H2' |
C2' |
O2' |
HE |
298.9 |
299.9 |
| H3' |
C3' |
C2' |
O2' |
304.5 |
303.0 |
| H3' |
C3' |
C2' |
H2' |
185.3 |
182.8 |
| H4' |
C4' |
C5' |
O5' |
61.9 |
62.3 |
| H4' |
C4' |
C5' |
H5' |
181.4 |
182.4 |
| H4' |
C4' |
C3' |
H3' |
177.4 |
177.2 |
| C6' |
C5' |
H5' |
O5' |
116.6 |
120.1 |
| C4' |
C5' |
H5' |
O5' |
240.1 |
240.0 |
| H5' |
C5' |
C4' |
H4' |
181.4 |
182.4 |
| O6' |
C6' |
H6'2 |
H6'1 |
120.0 |
240.0 |
| H6'2 |
C6' |
C5' |
O5' |
176.0 |
185.0 |
| H6'2 |
C6' |
C5' |
H5' |
58.1 |
65.0 |
| O6' |
C6' |
H6'1 |
H6'2 |
240.0 |
120.0 |
| H6'1 |
C6' |
C5' |
O5' |
55.9 |
305.1 |
| H6'1 |
C6' |
C5' |
H5' |
298.1 |
185.0 |
| HD |
O1' |
C1' |
H1' |
63.3 |
299.9 |
| HE |
O2' |
C2' |
H2' |
298.9 |
299.9 |
| HF |
O3' |
C3' |
H3' |
62.2 |
60.2 |
| H6' |
O6' |
C6' |
H6'2 |
300.0 |
60.0 |
| H6' |
O6' |
C6' |
H6'1 |
60.0 |
300.0 |