PDB Chemical Component LAT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LAT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1' |
C1' |
1.368 |
1.429 |
| C1' |
O5' |
1.387 |
1.429 |
| C1' |
C2' |
1.502 |
1.531 |
| O5' |
C5' |
1.416 |
1.429 |
| O2' |
C2' |
1.369 |
1.429 |
| C2' |
C3' |
1.506 |
1.532 |
| O6 |
C6 |
1.398 |
1.429 |
| O6' |
C6' |
1.398 |
1.429 |
| C5' |
C6' |
1.496 |
1.530 |
| C5' |
C4' |
1.513 |
1.531 |
| C3' |
O3' |
1.430 |
1.429 |
| C3' |
C4' |
1.487 |
1.532 |
| C4' |
O1 |
1.395 |
1.428 |
| C6 |
C5 |
1.512 |
1.530 |
| O5 |
C5 |
1.407 |
1.429 |
| O5 |
C1 |
1.405 |
1.429 |
| C5 |
C4 |
1.511 |
1.531 |
| O1 |
C1 |
1.395 |
1.428 |
| C1 |
C2 |
1.496 |
1.531 |
| C4 |
O4 |
1.391 |
1.429 |
| C4 |
C3 |
1.510 |
1.532 |
| C2 |
C3 |
1.526 |
1.531 |
| C2 |
O2 |
1.399 |
1.430 |
| C3 |
O3 |
1.408 |
1.429 |
| C1 |
H1 |
1.100 |
1.091 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.089 |
| C6 |
H62 |
1.099 |
1.090 |
| C6 |
H61 |
1.100 |
1.090 |
| O2 |
HO2 |
0.950 |
0.967 |
| O3 |
HO3 |
0.950 |
0.968 |
| O4 |
HO4 |
0.950 |
0.968 |
| O6 |
HO6 |
0.950 |
0.967 |
| C1' |
H1' |
1.099 |
1.090 |
| C2' |
H2' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C5' |
H5' |
1.100 |
1.090 |
| C6' |
H6'2 |
1.100 |
1.090 |
| C6' |
H6'1 |
1.100 |
1.091 |
| O1' |
HO1' |
0.950 |
0.967 |
| O2' |
HO2' |
0.950 |
0.967 |
| O3' |
HO3' |
0.950 |
0.966 |
| O6' |
HO6' |
0.950 |
0.967 |
Bond Angles for LAT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1' |
C1' |
O5' |
106.0 |
109.4 |
| O1' |
C1' |
H1' |
113.1 |
109.5 |
| O5' |
C1' |
H1' |
112.8 |
109.5 |
| C1' |
C2' |
H2' |
109.4 |
109.5 |
| O5' |
C5' |
H5' |
109.6 |
109.5 |
| O2' |
C2' |
H2' |
111.4 |
109.6 |
| C2' |
C3' |
O3' |
110.2 |
109.6 |
| C2' |
C3' |
C4' |
113.3 |
109.1 |
| C3' |
C2' |
H2' |
109.3 |
109.5 |
| C2' |
C3' |
H3' |
107.6 |
109.6 |
| O6 |
C6 |
H62 |
109.3 |
109.4 |
| O6 |
C6 |
H61 |
109.3 |
109.5 |
| O6' |
C6' |
H6'2 |
109.1 |
109.5 |
| O6' |
C6' |
H6'1 |
109.1 |
109.5 |
| C6' |
C5' |
H5' |
108.5 |
109.5 |
| C5' |
C6' |
H6'2 |
109.1 |
109.5 |
| C5' |
C6' |
H6'1 |
109.1 |
109.5 |
| C5' |
C4' |
O1 |
111.5 |
109.6 |
| C5' |
C4' |
H4' |
109.1 |
109.6 |
| C4' |
C3' |
O3' |
109.2 |
109.5 |
| O3' |
C3' |
H3' |
108.5 |
109.5 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C3' |
C4' |
O1 |
107.8 |
109.6 |
| C4' |
C3' |
H3' |
107.8 |
109.6 |
| C3' |
C4' |
H4' |
109.5 |
109.5 |
| C4' |
O1 |
C1 |
114.3 |
114.0 |
| O1 |
C4' |
H4' |
110.8 |
109.5 |
| C6 |
C5 |
H5 |
108.3 |
109.5 |
| O5 |
C5 |
H5 |
109.7 |
109.5 |
| O5 |
C1 |
H1 |
110.5 |
109.5 |
| C5 |
C4 |
O4 |
110.6 |
109.5 |
| C5 |
C4 |
H4 |
108.5 |
109.6 |
| O1 |
C1 |
C2 |
108.4 |
109.5 |
| O1 |
C1 |
H1 |
110.6 |
109.5 |
| C1 |
C2 |
C3 |
109.6 |
109.2 |
| C1 |
C2 |
O2 |
107.1 |
109.5 |
| C2 |
C1 |
H1 |
109.2 |
109.5 |
| C1 |
C2 |
H2 |
109.6 |
109.5 |
| O4 |
C4 |
H4 |
110.2 |
109.5 |
| C4 |
O4 |
HO4 |
109.5 |
114.0 |
| C4 |
C3 |
O3 |
110.1 |
109.5 |
| C4 |
C3 |
H3 |
108.2 |
109.6 |
| C3 |
C2 |
O2 |
110.2 |
109.5 |
| C2 |
C3 |
O3 |
109.3 |
109.6 |
| C3 |
C2 |
H2 |
109.2 |
109.5 |
| C2 |
C3 |
H3 |
108.0 |
109.6 |
| O2 |
C2 |
H2 |
111.0 |
109.5 |
| C2 |
O2 |
HO2 |
109.5 |
114.0 |
| O3 |
C3 |
H3 |
109.5 |
109.5 |
| C3 |
O3 |
HO3 |
109.5 |
114.0 |
| H61 |
C6 |
H62 |
109.5 |
109.4 |
| H6'1 |
C6' |
H6'2 |
109.5 |
109.4 |
Torsion Angles for LAT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
C1' |
O1' |
H1' |
235.9 |
240.0 |
| O1' |
C1' |
C2' |
H2' |
49.0 |
57.7 |
| O1' |
C1' |
O5' |
H1' |
124.3 |
120.0 |
| O5' |
C1' |
C2' |
H2' |
296.2 |
297.8 |
| C1' |
O5' |
C5' |
H5' |
307.1 |
301.1 |
| O2' |
C2' |
C1' |
H2' |
237.3 |
239.7 |
| C1' |
C2' |
C3' |
O3' |
185.7 |
183.1 |
| C3' |
C2' |
C1' |
H2' |
119.3 |
119.9 |
| C1' |
C2' |
C3' |
H3' |
67.5 |
62.9 |
| C6' |
C5' |
O5' |
H5' |
241.6 |
240.0 |
| O5' |
C5' |
C6' |
H6'2 |
177.7 |
185.1 |
| O5' |
C5' |
C6' |
H6'1 |
58.2 |
305.0 |
| O5' |
C5' |
C4' |
H4' |
62.1 |
62.3 |
| C1' |
C2' |
O2' |
H2' |
121.5 |
120.2 |
| O2' |
C2' |
C3' |
O3' |
66.4 |
63.3 |
| C3' |
C2' |
O2' |
H2' |
240.0 |
239.8 |
| O2' |
C2' |
C3' |
H3' |
308.2 |
303.1 |
| C1' |
C2' |
C3' |
H2' |
240.6 |
240.1 |
| O2' |
C2' |
C3' |
H2' |
121.3 |
120.2 |
| C4' |
C3' |
C2' |
O3' |
122.7 |
119.9 |
| O3' |
C3' |
C2' |
H3' |
118.2 |
120.2 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
300.1 |
| C2' |
C3' |
C4' |
O1 |
173.1 |
176.9 |
| C4' |
C3' |
C2' |
H3' |
240.9 |
240.1 |
| C2' |
C3' |
C4' |
H4' |
293.7 |
297.0 |
| O6 |
C6 |
C5 |
H5 |
300.7 |
305.0 |
| H61 |
C6 |
O6 |
H62 |
119.8 |
240.1 |
| O6' |
C6' |
C5' |
H5' |
178.9 |
305.0 |
| C5' |
C6' |
O6' |
H6'2 |
239.8 |
120.0 |
| C5' |
C6' |
O6' |
H6'1 |
120.2 |
240.0 |
| H6'1 |
C6' |
O6' |
H6'2 |
119.5 |
240.0 |
| O5' |
C5' |
C6' |
H5' |
119.1 |
120.0 |
| O6' |
C6' |
C5' |
H6'2 |
120.2 |
240.0 |
| O6' |
C6' |
C5' |
H6'1 |
239.7 |
120.0 |
| C6' |
C5' |
C4' |
O1 |
63.8 |
62.5 |
| C6' |
C5' |
C4' |
H4' |
301.1 |
302.3 |
| H6'1 |
C6' |
C5' |
H6'2 |
240.5 |
120.0 |
| C5' |
C4' |
C3' |
O3' |
175.7 |
176.9 |
| C3' |
C4' |
C5' |
O1 |
118.3 |
120.0 |
| C5' |
C4' |
C3' |
H3' |
293.5 |
297.0 |
| C3' |
C4' |
C5' |
H4' |
241.0 |
240.1 |
| C5' |
C4' |
O1 |
C1 |
257.2 |
209.7 |
| O1 |
C4' |
C5' |
H4' |
122.7 |
120.2 |
| C2' |
C3' |
O3' |
C4' |
125.1 |
119.6 |
| O3' |
C3' |
C2' |
H2' |
305.1 |
303.0 |
| C2' |
C3' |
O3' |
H3' |
242.4 |
239.8 |
| O3' |
C3' |
C4' |
O1 |
296.3 |
296.8 |
| C4' |
C3' |
O3' |
H3' |
117.3 |
120.2 |
| O3' |
C3' |
C4' |
H4' |
57.0 |
56.9 |
| C2' |
C3' |
C4' |
O3' |
236.8 |
240.1 |
| C4' |
C3' |
C2' |
H2' |
67.8 |
62.9 |
| C2' |
C3' |
C4' |
H3' |
119.0 |
119.9 |
| C5' |
C4' |
C3' |
O1 |
239.4 |
240.0 |
| C5' |
C4' |
C3' |
H4' |
118.7 |
119.9 |
| O3' |
C3' |
C4' |
H3' |
242.2 |
239.8 |
| C4' |
C3' |
O3' |
HO3' |
54.9 |
180.5 |
| C3' |
C4' |
O1 |
C1 |
138.7 |
89.9 |
| O1 |
C4' |
C3' |
H4' |
239.4 |
239.9 |
| C5' |
C4' |
O1 |
H4' |
238.3 |
239.8 |
| O1 |
C4' |
C3' |
O3' |
296.3 |
296.8 |
| O1 |
C4' |
C3' |
H3' |
54.1 |
57.0 |
| C3' |
C4' |
O1 |
H4' |
119.8 |
120.1 |
| C4' |
O1 |
C1 |
C2 |
176.4 |
175.0 |
| C4' |
O1 |
C1 |
H1 |
56.8 |
55.0 |
| O5 |
C5 |
C6 |
H5 |
119.1 |
120.1 |
| C6 |
C5 |
C4 |
O4 |
302.8 |
302.3 |
| C6 |
C5 |
C4 |
H4 |
63.8 |
62.4 |
| C6 |
C5 |
O5 |
H5 |
241.8 |
240.0 |
| C5 |
O5 |
C1 |
H1 |
58.6 |
58.8 |
| O5 |
C5 |
C4 |
H4 |
184.5 |
182.4 |
| O1 |
C1 |
O5 |
H1 |
120.7 |
120.0 |
| C2 |
C1 |
O5 |
H1 |
238.9 |
240.1 |
| O5 |
C1 |
C2 |
H2 |
294.0 |
297.6 |
| O4 |
C4 |
C5 |
H4 |
239.0 |
239.9 |
| C5 |
C4 |
O4 |
HO4 |
180.0 |
180.3 |
| C5 |
C4 |
C3 |
O3 |
174.4 |
176.9 |
| C5 |
C4 |
C3 |
H3 |
294.1 |
297.1 |
| C1 |
O1 |
C4' |
H4' |
18.9 |
329.9 |
| O5 |
C1 |
O1 |
H1 |
239.4 |
240.0 |
| O1 |
C1 |
C2 |
C3 |
171.5 |
177.6 |
| O1 |
C1 |
C2 |
O2 |
291.1 |
297.6 |
| C2 |
C1 |
O1 |
H1 |
119.6 |
120.0 |
| O1 |
C1 |
C2 |
H2 |
51.6 |
57.7 |
| O5 |
C1 |
C2 |
H1 |
121.8 |
119.9 |
| O1 |
C1 |
C2 |
H1 |
239.5 |
240.0 |
| C3 |
C2 |
C1 |
O2 |
240.4 |
240.1 |
| C1 |
C2 |
C3 |
O3 |
186.9 |
183.2 |
| C3 |
C2 |
C1 |
H2 |
119.9 |
120.0 |
| C1 |
C2 |
C3 |
H3 |
67.8 |
63.0 |
| O2 |
C2 |
C1 |
H2 |
239.5 |
239.9 |
| C1 |
C2 |
O2 |
HO2 |
180.0 |
60.0 |
| C5 |
C4 |
O4 |
H4 |
120.0 |
120.2 |
| O4 |
C4 |
C3 |
O3 |
53.0 |
57.0 |
| O4 |
C4 |
C3 |
H3 |
172.7 |
177.2 |
| C4 |
C3 |
C2 |
O2 |
191.3 |
183.1 |
| C2 |
C3 |
C4 |
O3 |
238.4 |
240.1 |
| C4 |
C3 |
C2 |
H2 |
69.0 |
63.0 |
| C2 |
C3 |
C4 |
H3 |
118.8 |
119.9 |
| O3 |
C3 |
C4 |
H3 |
240.4 |
239.8 |
| C4 |
C3 |
O3 |
HO3 |
180.0 |
180.5 |
| C1 |
C2 |
C3 |
O2 |
117.7 |
119.9 |
| C3 |
C2 |
C1 |
H1 |
292.0 |
297.7 |
| C1 |
C2 |
C3 |
H2 |
239.9 |
240.1 |
| C4 |
C3 |
C2 |
O3 |
122.1 |
119.9 |
| C4 |
C3 |
C2 |
H3 |
241.1 |
240.1 |
| O2 |
C2 |
C3 |
H2 |
122.3 |
120.2 |
| C3 |
C2 |
O2 |
HO2 |
299.2 |
179.7 |
| O3 |
C3 |
C2 |
H3 |
119.1 |
120.2 |
| C2 |
C3 |
O3 |
HO3 |
303.0 |
300.0 |
| C1 |
C2 |
O2 |
C3 |
240.8 |
240.3 |
| O2 |
C2 |
C1 |
H1 |
51.6 |
57.6 |
| C1 |
C2 |
O2 |
H2 |
119.6 |
120.1 |
| O2 |
C2 |
C3 |
O3 |
69.2 |
63.3 |
| C3 |
C2 |
O2 |
H2 |
238.8 |
239.8 |
| O2 |
C2 |
C3 |
H3 |
310.2 |
303.0 |
| C4 |
C3 |
O3 |
H3 |
118.8 |
120.2 |
| O3 |
C3 |
C2 |
O2 |
69.2 |
63.3 |
| O3 |
C3 |
C2 |
H2 |
307.0 |
303.1 |
| C2 |
C3 |
O3 |
H3 |
241.9 |
239.8 |
| O1 |
C1 |
H1 |
C2 |
119.1 |
120.1 |
| H1 |
C1 |
C2 |
C3 |
292.0 |
297.7 |
| H1 |
C1 |
C2 |
O2 |
51.6 |
57.6 |
| H1 |
C1 |
C2 |
H2 |
172.1 |
177.7 |
| C1 |
C2 |
H2 |
C3 |
120.1 |
119.8 |
| C1 |
C2 |
H2 |
O2 |
241.9 |
239.9 |
| H2 |
C2 |
C1 |
H1 |
172.1 |
177.7 |
| C3 |
C2 |
H2 |
O2 |
121.8 |
120.2 |
| H2 |
C2 |
C3 |
O3 |
307.0 |
303.1 |
| H2 |
C2 |
C3 |
H3 |
187.9 |
182.9 |
| H2 |
C2 |
O2 |
HO2 |
60.4 |
299.9 |
| C4 |
C3 |
H3 |
O3 |
240.0 |
239.8 |
| H3 |
C3 |
C2 |
O2 |
310.2 |
303.0 |
| C2 |
C3 |
H3 |
O3 |
118.9 |
120.2 |
| H3 |
C3 |
C2 |
H2 |
187.9 |
182.9 |
| H3 |
C3 |
O3 |
HO3 |
61.2 |
60.3 |
| C5 |
C4 |
H4 |
O4 |
238.7 |
239.8 |
| H4 |
C4 |
O4 |
HO4 |
60.0 |
60.1 |
| H4 |
C4 |
C3 |
O3 |
292.3 |
296.9 |
| H4 |
C4 |
C3 |
H3 |
51.9 |
57.1 |
| H5 |
C5 |
C4 |
O4 |
183.0 |
182.3 |
| H5 |
C5 |
C4 |
H4 |
304.1 |
302.4 |
| O6 |
C6 |
H62 |
H61 |
119.7 |
240.1 |
| H62 |
C6 |
C5 |
H5 |
180.6 |
65.0 |
| O6 |
C6 |
H61 |
H62 |
240.3 |
119.9 |
| H61 |
C6 |
C5 |
H5 |
60.8 |
185.0 |
| HO2 |
O2 |
C2 |
H2 |
60.4 |
299.9 |
| HO3 |
O3 |
C3 |
H3 |
61.2 |
60.3 |
| HO4 |
O4 |
C4 |
H4 |
60.0 |
60.1 |
| HO6 |
O6 |
C6 |
H62 |
300.1 |
60.0 |
| HO6 |
O6 |
C6 |
H61 |
59.9 |
300.0 |
| O1' |
C1' |
H1' |
O5' |
239.7 |
240.0 |
| H1' |
C1' |
C2' |
H2' |
170.6 |
177.8 |
| H2' |
C2' |
C3' |
O3' |
305.1 |
303.0 |
| H2' |
C2' |
C3' |
C4' |
67.8 |
62.9 |
| H2' |
C2' |
C3' |
H3' |
186.9 |
182.8 |
| C2' |
C3' |
H3' |
O3' |
119.2 |
120.2 |
| C2' |
C3' |
H3' |
C4' |
237.5 |
240.4 |
| H3' |
C3' |
C2' |
H2' |
186.9 |
182.8 |
| C4' |
C3' |
H3' |
O3' |
241.8 |
239.8 |
| H3' |
C3' |
O3' |
HO3' |
297.6 |
60.3 |
| H3' |
C3' |
C4' |
O1 |
54.1 |
57.0 |
| H3' |
C3' |
C4' |
H4' |
174.7 |
177.1 |
| C5' |
C4' |
H4' |
O1 |
123.1 |
120.2 |
| H4' |
C4' |
C3' |
O3' |
57.0 |
56.9 |
| C3' |
C4' |
H4' |
O1 |
241.2 |
239.9 |
| H4' |
C4' |
C3' |
H3' |
174.7 |
177.1 |
| H4' |
C4' |
O1 |
C1 |
18.9 |
329.9 |
| H5' |
C5' |
C6' |
H6'2 |
58.6 |
65.1 |
| H5' |
C5' |
C6' |
H6'1 |
299.1 |
185.0 |
| H5' |
C5' |
C4' |
O1 |
303.9 |
302.5 |
| H5' |
C5' |
C4' |
H4' |
181.2 |
182.3 |
| O6' |
C6' |
H6'2 |
H6'1 |
119.3 |
240.0 |
| H6'2 |
C6' |
C5' |
H5' |
58.6 |
65.1 |
| C5' |
C6' |
H6'2 |
H6'1 |
240.8 |
120.0 |
| O6' |
C6' |
H6'1 |
H6'2 |
240.7 |
120.0 |
| H6'1 |
C6' |
C5' |
H5' |
299.1 |
185.0 |
| C5' |
C6' |
H6'1 |
H6'2 |
119.2 |
240.0 |
| HO1' |
O1' |
C1' |
O5' |
180.0 |
300.0 |
| HO1' |
O1' |
C1' |
H1' |
304.1 |
60.0 |
| HO2' |
O2' |
C2' |
H2' |
58.5 |
299.8 |
| HO3' |
O3' |
C3' |
H3' |
297.6 |
60.3 |
| HO6' |
O6' |
C6' |
H6'2 |
300.3 |
60.0 |
| HO6' |
O6' |
C6' |
H6'1 |
59.8 |
300.1 |