PDB Chemical Component LAK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LAK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O6 |
C6 |
1.429 |
1.430 |
| C6 |
C5 |
1.548 |
1.530 |
| C5 |
C4 |
1.579 |
1.531 |
| C5 |
O5 |
1.441 |
1.428 |
| C4 |
O4 |
1.502 |
1.429 |
| C4 |
C3 |
1.522 |
1.532 |
| O5 |
C1 |
1.427 |
1.429 |
| C6' |
O1 |
1.443 |
1.429 |
| C6' |
C5' |
1.456 |
1.530 |
| C1 |
O1 |
1.394 |
1.429 |
| C1 |
C2 |
1.488 |
1.531 |
| O4' |
C4' |
1.444 |
1.429 |
| C3 |
C2 |
1.542 |
1.532 |
| C3 |
O3 |
1.469 |
1.429 |
| C4' |
C5' |
1.519 |
1.531 |
| C4' |
C3' |
1.547 |
1.531 |
| O3' |
C3' |
1.435 |
1.429 |
| C2 |
O2 |
1.475 |
1.429 |
| C5' |
O5' |
1.445 |
1.429 |
| C3' |
C2' |
1.533 |
1.532 |
| O5' |
C1' |
1.388 |
1.429 |
| C2' |
C1' |
1.515 |
1.531 |
| C2' |
O2' |
1.431 |
1.429 |
| C1' |
O1' |
1.399 |
1.428 |
| C1 |
H1 |
1.100 |
1.089 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H7 |
1.100 |
1.090 |
| O2 |
H8 |
0.950 |
0.967 |
| O3 |
H9 |
0.950 |
0.966 |
| O4 |
H10 |
0.950 |
0.967 |
| O6 |
H11 |
0.950 |
0.966 |
| C1' |
H12 |
1.100 |
1.090 |
| C2' |
H13 |
1.100 |
1.090 |
| C3' |
H14 |
1.100 |
1.090 |
| C4' |
H15 |
1.100 |
1.090 |
| C5' |
H16 |
1.100 |
1.090 |
| C6' |
H17 |
1.100 |
1.091 |
| C6' |
H18 |
1.100 |
1.090 |
| O1' |
H19 |
0.951 |
0.967 |
| O2' |
H20 |
0.950 |
0.966 |
| O3' |
H21 |
0.950 |
0.967 |
| O4' |
H22 |
0.950 |
0.966 |
Bond Angles for LAK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
H6 |
109.7 |
109.4 |
| O6 |
C6 |
H7 |
109.7 |
109.4 |
| C6 |
C5 |
O5 |
106.3 |
109.5 |
| C6 |
C5 |
H5 |
107.6 |
109.4 |
| C5 |
C4 |
O4 |
104.2 |
109.5 |
| C5 |
C4 |
H4 |
111.4 |
109.6 |
| O5 |
C5 |
H5 |
108.9 |
109.5 |
| O4 |
C4 |
H4 |
112.6 |
109.5 |
| C4 |
O4 |
H10 |
109.5 |
114.0 |
| C4 |
C3 |
O3 |
107.8 |
109.5 |
| C4 |
C3 |
H3 |
111.7 |
109.6 |
| O5 |
C1 |
H1 |
110.7 |
109.5 |
| O1 |
C6' |
H17 |
110.2 |
109.5 |
| O1 |
C6' |
H18 |
110.1 |
109.5 |
| C6' |
C5' |
O5' |
106.4 |
109.5 |
| C6' |
C5' |
H16 |
109.6 |
109.5 |
| C1 |
C2 |
O2 |
104.8 |
109.6 |
| C2 |
C1 |
H1 |
109.8 |
109.5 |
| C1 |
C2 |
H2 |
110.9 |
109.5 |
| O4' |
C4' |
H15 |
110.0 |
109.6 |
| C3 |
C2 |
O2 |
107.4 |
109.5 |
| C3 |
C2 |
H2 |
110.1 |
109.5 |
| O3 |
C3 |
H3 |
112.6 |
109.6 |
| C3 |
O3 |
H9 |
109.5 |
114.0 |
| C4' |
C5' |
O5' |
110.6 |
109.4 |
| C5' |
C4' |
H15 |
109.0 |
109.5 |
| C4' |
C5' |
H16 |
108.7 |
109.4 |
| C4' |
C3' |
H14 |
106.6 |
109.6 |
| O3' |
C3' |
H14 |
108.0 |
109.6 |
| O2 |
C2 |
H2 |
111.0 |
109.5 |
| C2 |
O2 |
H8 |
109.5 |
114.0 |
| C5' |
O5' |
C1' |
109.4 |
114.1 |
| O5' |
C5' |
H16 |
109.7 |
109.5 |
| C3' |
C2' |
C1' |
112.0 |
109.2 |
| C3' |
C2' |
O2' |
110.7 |
109.6 |
| C3' |
C2' |
H13 |
108.1 |
109.6 |
| O5' |
C1' |
H12 |
111.6 |
109.5 |
| C1' |
C2' |
O2' |
108.2 |
109.5 |
| C2' |
C1' |
O1' |
110.4 |
109.5 |
| C2' |
C1' |
H12 |
109.7 |
109.4 |
| C1' |
C2' |
H13 |
108.4 |
109.5 |
| O2' |
C2' |
H13 |
109.5 |
109.4 |
| C2' |
O2' |
H20 |
109.5 |
114.1 |
| O1' |
C1' |
H12 |
111.4 |
109.5 |
| C1' |
O1' |
H19 |
109.5 |
114.0 |
| H6 |
C6 |
H7 |
109.5 |
109.5 |
| H17 |
C6' |
H18 |
109.5 |
109.4 |
Torsion Angles for LAK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
C5 |
H5 |
63.7 |
305.0 |
| H6 |
C6 |
O6 |
H7 |
239.8 |
119.9 |
| C6 |
C5 |
C4 |
O4 |
297.3 |
302.3 |
| C6 |
C5 |
C4 |
H4 |
59.0 |
62.5 |
| O5 |
C5 |
C6 |
H5 |
116.6 |
120.0 |
| O4 |
C4 |
C5 |
H4 |
238.3 |
239.8 |
| C5 |
C4 |
O4 |
H10 |
180.0 |
180.4 |
| C5 |
C4 |
C3 |
O3 |
162.0 |
176.8 |
| C5 |
C4 |
C3 |
H3 |
286.1 |
297.1 |
| C6 |
C5 |
O5 |
H5 |
244.3 |
240.0 |
| O5 |
C5 |
C4 |
O4 |
58.5 |
62.3 |
| O5 |
C5 |
C4 |
H4 |
180.2 |
182.5 |
| C5 |
O5 |
C1 |
H1 |
57.9 |
58.9 |
| C5 |
C4 |
O4 |
H4 |
120.9 |
120.3 |
| O4 |
C4 |
C3 |
O3 |
49.9 |
56.9 |
| O4 |
C4 |
C3 |
H3 |
174.1 |
177.2 |
| C4 |
C3 |
C2 |
O2 |
191.5 |
183.1 |
| C4 |
C3 |
C2 |
H2 |
70.5 |
62.9 |
| O3 |
C3 |
C4 |
H3 |
235.9 |
239.8 |
| C4 |
C3 |
O3 |
H9 |
180.0 |
180.4 |
| C2 |
C1 |
O5 |
H1 |
238.7 |
240.0 |
| O5 |
C1 |
C2 |
H2 |
295.6 |
297.7 |
| O1 |
C6' |
C5' |
O5' |
69.4 |
65.1 |
| O1 |
C6' |
C5' |
H16 |
310.9 |
305.0 |
| H17 |
C6' |
O1 |
H18 |
239.1 |
240.0 |
| C4' |
C5' |
C6' |
O5' |
120.9 |
119.9 |
| C6' |
C5' |
C4' |
H15 |
318.1 |
302.3 |
| C4' |
C5' |
C6' |
H16 |
239.3 |
240.0 |
| C6' |
C5' |
O5' |
C1' |
190.0 |
181.1 |
| O5' |
C5' |
C6' |
H16 |
118.5 |
120.0 |
| C1 |
O1 |
C6' |
H17 |
321.2 |
300.0 |
| C1 |
O1 |
C6' |
H18 |
82.0 |
60.0 |
| O5 |
C1 |
C2 |
H1 |
121.8 |
120.0 |
| C3 |
C2 |
C1 |
O2 |
243.6 |
240.1 |
| C3 |
C2 |
C1 |
H2 |
123.7 |
119.9 |
| O2 |
C2 |
C1 |
H2 |
240.1 |
239.8 |
| C1 |
C2 |
O2 |
H8 |
180.0 |
60.0 |
| O4' |
C4' |
C5' |
O5' |
195.6 |
182.5 |
| C5' |
C4' |
O4' |
H15 |
241.5 |
239.9 |
| O4' |
C4' |
C5' |
H16 |
316.1 |
302.4 |
| O4' |
C4' |
C3' |
H14 |
32.7 |
57.1 |
| C1 |
C2 |
C3 |
O2 |
114.8 |
120.0 |
| C3 |
C2 |
C1 |
H1 |
297.5 |
297.6 |
| C1 |
C2 |
C3 |
H2 |
235.9 |
240.1 |
| O2 |
C2 |
C3 |
H2 |
121.0 |
120.2 |
| C3 |
C2 |
O2 |
H8 |
299.8 |
179.7 |
| C4 |
C3 |
O3 |
H3 |
123.6 |
120.3 |
| O3 |
C3 |
C2 |
O2 |
76.8 |
63.2 |
| O3 |
C3 |
C2 |
H2 |
315.8 |
303.0 |
| C6' |
C5' |
C4' |
O5' |
241.6 |
240.0 |
| C6' |
C5' |
C4' |
H16 |
121.2 |
120.1 |
| O4' |
C4' |
C5' |
H15 |
119.2 |
120.2 |
| C5' |
C4' |
C3' |
H14 |
273.3 |
297.2 |
| C4' |
C5' |
O5' |
C1' |
68.3 |
61.1 |
| O5' |
C5' |
C4' |
H16 |
239.5 |
240.1 |
| O3' |
C3' |
C4' |
H14 |
242.5 |
239.7 |
| C4' |
C3' |
C2' |
C1' |
322.6 |
303.0 |
| C4' |
C3' |
C2' |
O2' |
201.8 |
183.1 |
| C4' |
C3' |
C2' |
H13 |
81.9 |
63.0 |
| C4' |
C3' |
O3' |
H14 |
116.7 |
120.3 |
| O3' |
C3' |
C2' |
H13 |
316.2 |
303.0 |
| O2 |
C2 |
C1 |
H1 |
54.0 |
57.5 |
| C1 |
C2 |
O2 |
H2 |
119.8 |
120.1 |
| C3 |
C2 |
O2 |
H2 |
239.6 |
239.9 |
| C6' |
C5' |
O5' |
H16 |
241.6 |
239.9 |
| O5' |
C5' |
C4' |
H15 |
76.4 |
62.3 |
| C4' |
C5' |
O5' |
H16 |
119.9 |
119.9 |
| C5' |
O5' |
C1' |
H12 |
45.6 |
58.8 |
| C1' |
C2' |
C3' |
O2' |
120.8 |
119.9 |
| C3' |
C2' |
C1' |
O1' |
173.7 |
177.6 |
| C3' |
C2' |
C1' |
H12 |
296.8 |
297.6 |
| C1' |
C2' |
C3' |
H13 |
240.7 |
240.1 |
| O2' |
C2' |
C3' |
H13 |
119.9 |
120.1 |
| C3' |
C2' |
O2' |
H20 |
180.0 |
179.7 |
| C1' |
O5' |
C5' |
H16 |
308.4 |
301.2 |
| C2' |
C1' |
O5' |
H12 |
240.0 |
240.1 |
| O5' |
C1' |
C2' |
H13 |
298.8 |
297.5 |
| O1' |
C1' |
O5' |
H12 |
121.8 |
120.1 |
| O5' |
C1' |
O1' |
H19 |
180.0 |
300.0 |
| C5' |
O5' |
C1' |
C2' |
285.7 |
298.9 |
| C3' |
C2' |
C1' |
O2' |
237.8 |
240.0 |
| C3' |
C2' |
C1' |
H13 |
119.2 |
120.0 |
| O5' |
C1' |
C2' |
H12 |
121.2 |
119.9 |
| O2' |
C2' |
C1' |
H13 |
241.4 |
240.0 |
| C1' |
C2' |
O2' |
H20 |
57.0 |
59.9 |
| O1' |
C1' |
C2' |
H12 |
236.9 |
240.0 |
| C2' |
C1' |
O1' |
H19 |
64.1 |
180.0 |
| C3' |
C2' |
O2' |
C1' |
123.0 |
119.8 |
| C3' |
C2' |
O2' |
H13 |
240.9 |
239.8 |
| O2' |
C2' |
C1' |
O1' |
296.0 |
297.6 |
| O2' |
C2' |
C1' |
H12 |
59.0 |
57.6 |
| C1' |
C2' |
O2' |
H13 |
117.9 |
120.0 |
| C5' |
O5' |
C1' |
O1' |
167.5 |
178.9 |
| O5' |
C1' |
O1' |
H12 |
238.0 |
239.9 |
| O1' |
C1' |
C2' |
O2' |
296.0 |
297.6 |
| C2' |
C1' |
O1' |
H12 |
122.1 |
120.0 |
| O1' |
C1' |
C2' |
H13 |
54.6 |
57.6 |
| H1 |
C1 |
C2 |
O2 |
54.0 |
57.5 |
| H1 |
C1 |
C2 |
H2 |
173.8 |
177.7 |
| C1 |
C2 |
H2 |
O2 |
243.9 |
239.8 |
| H2 |
C2 |
C1 |
H1 |
173.8 |
177.7 |
| C3 |
C2 |
H2 |
O2 |
118.8 |
120.2 |
| H2 |
C2 |
O2 |
H8 |
60.2 |
299.8 |
| C4 |
C3 |
H3 |
O3 |
238.6 |
239.8 |
| H3 |
C3 |
C2 |
O2 |
315.4 |
303.0 |
| H3 |
C3 |
C2 |
H2 |
194.4 |
182.9 |
| H3 |
C3 |
O3 |
H9 |
56.4 |
60.1 |
| C5 |
C4 |
H4 |
O4 |
243.3 |
239.8 |
| H4 |
C4 |
O4 |
H10 |
59.1 |
60.1 |
| H4 |
C4 |
C3 |
O3 |
286.6 |
296.8 |
| H4 |
C4 |
C3 |
H3 |
50.8 |
57.1 |
| C6 |
C5 |
H5 |
O5 |
114.8 |
120.0 |
| H5 |
C5 |
C4 |
O4 |
177.2 |
182.3 |
| H5 |
C5 |
C4 |
H4 |
298.8 |
302.5 |
| O6 |
C6 |
H6 |
H7 |
120.4 |
240.1 |
| H6 |
C6 |
C5 |
O5 |
60.4 |
185.0 |
| H6 |
C6 |
C5 |
H5 |
303.9 |
65.0 |
| O6 |
C6 |
H7 |
H6 |
239.6 |
119.9 |
| H7 |
C6 |
C5 |
O5 |
300.2 |
305.1 |
| H7 |
C6 |
C5 |
H5 |
183.6 |
185.0 |
| H8 |
O2 |
C2 |
H2 |
60.2 |
299.8 |
| H9 |
O3 |
C3 |
H3 |
56.4 |
60.1 |
| H10 |
O4 |
C4 |
H4 |
59.1 |
60.1 |
| H11 |
O6 |
C6 |
H6 |
299.9 |
59.9 |
| H11 |
O6 |
C6 |
H7 |
60.1 |
300.0 |
| H12 |
C1' |
C2' |
O2' |
59.0 |
57.6 |
| C2' |
C1' |
H12 |
O1' |
237.5 |
240.0 |
| H12 |
C1' |
C2' |
H13 |
177.6 |
177.6 |
| H12 |
C1' |
O1' |
H19 |
302.0 |
60.1 |
| C3' |
C2' |
H13 |
C1' |
238.4 |
240.2 |
| C3' |
C2' |
H13 |
O2' |
120.6 |
120.2 |
| C1' |
C2' |
H13 |
O2' |
242.2 |
239.9 |
| H13 |
C2' |
C1' |
O1' |
54.6 |
57.6 |
| H13 |
C2' |
C1' |
H12 |
177.6 |
177.6 |
| H13 |
C2' |
O2' |
H20 |
299.1 |
299.9 |
| H14 |
C3' |
C2' |
C1' |
80.2 |
62.9 |
| H14 |
C3' |
C2' |
O2' |
319.4 |
303.0 |
| H14 |
C3' |
C2' |
H13 |
199.5 |
182.9 |
| H15 |
C4' |
C5' |
O5' |
76.4 |
62.3 |
| H15 |
C4' |
C5' |
H16 |
196.9 |
182.3 |
| H15 |
C4' |
C3' |
H14 |
152.4 |
177.3 |
| C6' |
C5' |
H16 |
O5' |
116.4 |
120.1 |
| C4' |
C5' |
H16 |
O5' |
239.0 |
240.1 |
| H16 |
C5' |
C4' |
H15 |
196.9 |
182.3 |
| H16 |
C5' |
O5' |
C1' |
308.4 |
301.2 |
| O1 |
C6' |
H17 |
H18 |
121.3 |
120.0 |
| H17 |
C6' |
C5' |
O5' |
309.8 |
305.0 |
| H17 |
C6' |
C5' |
H16 |
191.4 |
185.0 |
| O1 |
C6' |
H18 |
H17 |
238.7 |
240.0 |
| H18 |
C6' |
C5' |
O5' |
189.0 |
185.1 |
| H18 |
C6' |
C5' |
H16 |
70.5 |
65.0 |
| H19 |
O1' |
C1' |
H12 |
302.0 |
60.1 |
| H20 |
O2' |
C2' |
H13 |
299.1 |
299.9 |
| H21 |
O3' |
C3' |
H14 |
63.3 |
60.1 |
| H22 |
O4' |
C4' |
H15 |
298.5 |
300.2 |