PDB Chemical Component L9M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for L9M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.445 1.383
C1 C6 1.455 1.382
N1 N4 1.335 1.399
N1 C9 1.322 1.302
S1 C12 1.776 1.765
S1 C19 1.762 1.765
C2 C3 1.456 1.382
N2 N5 1.243 1.261
N2 C12 1.343 1.303
C3 C4 1.456 1.383
C3 CL1 1.755 1.507
N3 C10 1.493 1.469
C4 C5 1.433 1.382
N4 C14 1.374 1.371
C5 C6 1.452 1.382
N5 C19 1.349 1.303
C6 C8 1.538 1.507
N6 C7 1.491 1.464
N6 C12 1.404 1.386
C7 C10 1.535 1.530
C8 C10 1.537 1.530
C9 C15 1.458 1.460
C9 C18 1.473 1.507
C11 C13 1.447 1.362
C11 C17 1.464 1.403
C13 C14 1.464 1.394
C14 C15 1.484 1.409
C15 C16 1.451 1.398
C16 C17 1.476 1.387
C17 C19 1.460 1.479
C1 H1 1.080 1.081
C2 H2 1.080 1.080
N3 HN3 1.001 1.009
N3 HN3A 1.000 1.010
C4 H4 1.080 1.080
N4 HN4 1.000 0.969
C5 H5 1.080 1.080
N6 HN6 1.000 0.970
C7 H7 1.100 1.090
C7 H7A 1.100 1.090
C8 H8 1.100 1.090
C8 H8A 1.100 1.090
C10 H10 1.100 1.090
C11 H11 1.080 1.081
C13 H13 1.080 1.079
C16 H16 1.080 1.079
C18 H18 1.100 1.091
C18 H18A 1.100 1.089
C18 H18B 1.100 1.090
CL1 HL1 1.100 1.089
CL1 HL1A 1.100 1.089
CL1 HL1B 1.100 1.091

Bond Angles for L9M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 117.8 120.0
C1 C2 C3 117.5 119.9
C2 C1 H1 121.1 120.0
C1 C2 H2 121.2 120.0
C1 C6 C5 123.9 120.0
C1 C6 C8 118.7 120.0
C6 C1 H1 121.1 120.0
N4 N1 C9 112.7 110.1
N1 N4 C14 112.6 109.1
N1 N4 HN4 123.7 125.5
N1 C9 C15 105.0 107.8
N1 C9 C18 124.6 126.1
C12 S1 C19 89.4 88.9
S1 C12 N2 106.7 107.8
S1 C12 N6 130.4 126.1
S1 C19 N5 108.6 107.8
S1 C19 C17 124.8 126.1
C2 C3 C4 124.7 120.0
C2 C3 CL1 116.3 120.0
C3 C2 H2 121.2 120.1
N5 N2 C12 119.1 117.7
N2 N5 C19 115.9 117.7
N2 C12 N6 123.0 126.1
C4 C3 CL1 118.9 119.9
C3 C4 C5 117.2 120.0
C3 C4 H4 121.4 120.0
C3 CL1 HL1 109.5 109.5
C3 CL1 HL1A 109.5 109.5
C3 CL1 HL1B 109.5 109.4
N3 C10 C7 109.0 109.5
N3 C10 C8 111.6 109.5
C10 N3 HN3 109.5 111.0
C10 N3 HN3A 109.5 111.0
N3 C10 H10 109.8 109.5
C4 C5 C6 118.8 120.0
C5 C4 H4 121.4 120.0
C4 C5 H5 120.6 120.0
N4 C14 C13 134.6 133.6
N4 C14 C15 102.1 106.7
C14 N4 HN4 123.7 125.4
C5 C6 C8 117.3 120.0
C6 C5 H5 120.6 120.0
N5 C19 C17 126.6 126.1
C6 C8 C10 114.5 109.5
C6 C8 H8 107.8 109.5
C6 C8 H8A 107.8 109.5
C7 N6 C12 113.0 120.0
N6 C7 C10 111.3 109.5
C7 N6 HN6 108.3 120.0
N6 C7 H7 108.9 109.5
N6 C7 H7A 108.9 109.5
C12 N6 HN6 108.3 120.0
C7 C10 C8 113.3 109.5
C10 C7 H7 108.9 109.4
C10 C7 H7A 108.9 109.5
C7 C10 H10 107.9 109.5
C10 C8 H8 107.9 109.5
C10 C8 H8A 107.8 109.5
C8 C10 H10 105.1 109.4
C15 C9 C18 130.4 126.1
C9 C15 C14 107.6 106.3
C9 C15 C16 135.4 133.9
C9 C18 H18 109.5 109.4
C9 C18 H18A 109.4 109.5
C9 C18 H18B 109.5 109.5
C13 C11 C17 118.7 120.7
C11 C13 C14 118.9 120.2
C13 C11 H11 120.6 119.6
C11 C13 H13 120.6 119.9
C11 C17 C16 122.4 120.2
C11 C17 C19 117.0 119.9
C17 C11 H11 120.7 119.7
C13 C14 C15 123.4 119.8
C14 C13 H13 120.6 119.9
C14 C15 C16 117.0 119.8
C15 C16 C17 119.7 119.4
C15 C16 H16 120.2 120.3
C16 C17 C19 120.7 119.9
C17 C16 H16 120.1 120.3
HN3 N3 HN3A 109.4 111.1
H7 C7 H7A 110.1 109.5
H8 C8 H8A 111.1 109.4
H18 C18 H18A 109.5 109.5
H18 C18 H18B 109.5 109.5
H18A C18 H18B 109.5 109.5
HL1 CL1 HL1A 109.5 109.5
HL1 CL1 HL1B 109.4 109.5
HL1A CL1 HL1B 109.5 109.5

Torsion Angles for L9M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 C5 0.3 0.1
C2 C1 C6 C8 180.8 180.0
C6 C1 C2 H1 180.0 180.3
C1 C2 C3 C4 359.9 0.0
C1 C2 C3 CL1 179.6 180.0
C3 C2 C1 H2 180.0 180.0
C6 C1 C2 C3 359.8 360.0
C2 C1 C6 H1 180.0 179.7
C6 C1 C2 H2 179.8 180.0
C4 C5 C6 C1 359.8 359.9
C5 C6 C1 C8 179.4 180.1
C1 C6 C5 H5 179.8 180.0
C1 C6 C8 C10 79.5 90.0
C1 C6 C8 H8 199.5 210.0
C1 C6 C8 H8A 319.5 330.0
N4 N1 C9 C15 359.8 0.0
N4 N1 C9 C18 178.7 179.9
N1 N4 C14 C13 180.2 180.1
N1 N4 C14 C15 0.2 359.9
C14 N4 N1 HN4 180.0 180.1
C9 N1 N4 C14 360.0 0.0
C9 N1 N4 HN4 180.0 180.0
C15 C9 N1 C18 181.1 180.1
N1 C9 C15 C14 0.3 359.9
N1 C9 C15 C16 180.2 180.0
N1 C9 C18 H18 0.0 90.0
N1 C9 C18 H18A 120.0 210.1
N1 C9 C18 H18B 240.0 330.1
C12 S1 C19 N5 358.6 0.0
C12 S1 C19 C17 179.1 180.0
N5 N2 C12 S1 352.9 360.0
N2 C12 S1 N6 179.5 180.0
C7 N6 C12 S1 1.7 180.0
S1 C12 N6 HN6 241.7 359.9
C19 S1 C12 N2 4.4 0.0
C19 S1 C12 N6 184.9 180.0
N2 N5 C19 S1 357.7 360.0
N5 C19 S1 C17 179.4 180.0
C11 C17 C19 S1 180.0 0.0
C16 C17 C19 S1 0.1 180.0
C3 C2 C1 C6 359.8 360.0
C3 C2 C1 H1 179.8 179.7
C1 C2 C3 H2 180.0 180.0
C4 C3 C2 CL1 180.4 180.1
C2 C3 C4 C5 0.2 359.9
C2 C3 C4 H4 180.2 179.9
C2 C3 CL1 HL1 90.2 90.0
C2 C3 CL1 HL1A 210.2 210.0
C2 C3 CL1 HL1B 330.2 330.0
S1 C12 N2 N5 352.9 360.0
S1 C19 N5 N2 357.7 360.0
N5 N2 C12 N6 172.4 180.0
N2 N5 C19 C17 177.1 180.0
N2 C12 S1 C19 4.4 0.0
S1 C12 N2 N6 180.5 180.0
C12 N2 N5 C19 6.5 0.0
C7 N6 C12 N2 182.3 0.0
N2 C12 N6 HN6 62.3 179.9
C2 C3 C4 CL1 179.6 179.9
C4 C3 C2 H2 179.9 180.1
C4 C3 CL1 HL1 269.8 269.9
C4 C3 CL1 HL1A 29.8 30.0
C4 C3 CL1 HL1B 149.8 149.9
C3 C4 C5 C6 359.9 0.2
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 H5 179.9 180.0
C2 C3 CL1 C4 180.4 180.1
CL1 C3 C2 H2 359.5 360.0
CL1 C3 C4 C5 180.6 180.0
CL1 C3 C4 H4 0.6 360.0
HL1 CL1 C3 HL1A 240.0 239.9
HL1 CL1 C3 HL1B 120.0 120.0
HL1A CL1 C3 HL1B 240.0 240.0
C6 C8 C10 N3 184.0 295.0
N6 C7 C10 N3 75.2 55.0
C7 C10 N3 C8 125.9 120.0
N3 C10 C7 H7 315.2 295.0
N3 C10 C7 H7A 195.2 175.0
C7 C10 N3 H10 242.1 240.0
N3 C10 C8 H8 64.0 175.0
N3 C10 C8 H8A 304.0 55.0
C8 C10 N3 H10 116.1 120.0
HN3 N3 C10 HN3A 240.0 236.0
C1 C6 C5 C4 359.8 359.9
C5 C4 C3 CL1 180.6 180.0
C3 C4 C5 H4 180.0 180.0
C4 C5 C6 C8 179.3 179.9
C6 C5 C4 H5 180.0 180.1
C14 N4 N1 C9 360.0 0.0
N1 N4 C14 HN4 180.0 179.9
C9 C15 C14 N4 359.7 0.1
C11 C13 C14 N4 180.2 179.9
C13 C14 N4 C15 180.0 180.1
N4 C14 C13 H13 0.2 359.9
N4 C14 C15 C16 179.7 180.1
C1 C6 C5 C8 180.6 179.9
C5 C6 C1 H1 180.3 180.3
C6 C5 C4 H4 179.9 180.1
C4 C5 C6 H5 180.0 179.9
C5 C6 C8 C10 260.0 269.9
C5 C6 C8 H8 20.0 29.9
C5 C6 C8 H8A 140.0 149.9
S1 C19 N5 C17 180.6 180.0
C19 N5 N2 C12 6.5 0.0
C11 C17 C19 N5 0.7 180.0
C16 C17 C19 N5 180.8 360.0
C1 C6 C8 C5 179.5 180.1
C8 C6 C1 H1 0.9 0.3
N3 C10 C8 C6 184.0 295.0
C8 C6 C5 H5 359.3 0.1
C7 C10 C8 C6 60.4 175.0
C10 C8 C6 H8 240.0 240.0
C10 C8 C6 H8A 120.0 120.0
C6 C8 C10 H10 302.9 55.0
H8 C8 C6 H8A 240.0 240.1
S1 C12 N6 C7 1.7 180.0
N2 C12 N6 C7 182.3 0.0
N3 C10 C7 N6 75.2 55.0
C12 N6 C7 HN6 240.0 179.9
N6 C7 C10 C8 200.2 175.0
C10 C7 N6 H7 240.0 240.0
C10 C7 N6 H7A 120.0 120.0
N6 C7 C10 H10 316.1 294.9
H7 C7 N6 H7A 240.0 240.0
N6 C12 S1 C19 184.9 180.0
S1 C12 N6 N2 179.4 180.0
C12 N6 C7 C10 81.6 180.0
C7 N6 C12 HN6 120.0 180.1
C12 N6 C7 H7 201.6 300.0
C12 N6 C7 H7A 321.6 59.9
N3 C10 C7 C8 235.1 240.0
C7 C10 N3 HN3 180.0 60.0
C7 C10 N3 HN3A 300.0 184.0
N3 C10 C7 H10 119.1 120.0
C6 C8 C10 C7 60.4 175.0
C10 C7 N6 C12 81.6 180.0
C10 C7 N6 HN6 201.6 0.1
N6 C7 C10 H7 120.0 120.0
N6 C7 C10 H7A 240.0 240.0
C7 C10 C8 H8 300.4 55.0
C7 C10 C8 H8A 180.4 295.0
C8 C10 C7 H10 244.1 240.0
H7 C7 C10 H7A 120.0 119.9
N3 C10 C8 C7 123.5 120.0
C8 C10 N3 HN3 54.0 300.0
C8 C10 N3 HN3A 174.0 64.0
N3 C10 C8 H10 241.1 240.0
C6 C8 C10 H8 120.0 120.0
C6 C8 C10 H8A 240.0 240.0
C8 C10 C7 H7 80.2 55.0
C8 C10 C7 H7A 320.2 295.0
C7 C10 C8 H10 117.5 120.0
H8 C8 C10 H8A 120.0 119.9
N1 C9 C15 C18 178.8 179.9
N4 C14 C15 C9 359.7 0.1
C15 C9 C18 H18 178.6 269.9
C15 C9 C18 H18A 298.6 29.9
C15 C9 C18 H18B 58.5 149.9
C13 C14 C15 C9 179.7 180.0
C14 C15 C9 C16 180.1 180.0
C9 C15 C16 C17 180.2 180.0
C9 C15 C16 H16 0.2 360.0
N1 C9 C18 C15 181.4 180.1
C18 C9 C15 C14 181.6 180.1
C18 C9 C15 C16 1.5 0.1
H18 C18 C9 H18A 240.0 240.0
H18 C18 C9 H18B 120.0 120.0
H18A C18 C9 H18B 240.0 240.0
N4 C14 C13 C11 180.2 179.9
C13 C11 C17 C16 359.8 0.0
C13 C11 C17 C19 179.9 180.0
C17 C11 C13 H11 180.0 180.0
C11 C13 C14 C15 0.2 0.0
C14 C13 C11 H13 180.0 180.0
S1 C19 C17 C11 180.0 0.0
N5 C19 C17 C11 0.7 180.0
C17 C11 C13 C14 0.0 360.0
C13 C11 C17 H11 180.0 180.0
C17 C11 C13 H13 180.0 180.0
C15 C16 C17 C11 0.2 360.0
C16 C17 C11 C19 179.9 180.0
C11 C17 C16 H16 180.2 180.0
N4 C14 C13 C15 180.0 179.9
C13 C14 N4 HN4 0.2 0.1
C9 C15 C14 C13 179.7 180.0
C14 C13 C11 C17 0.0 360.0
C14 C13 C11 H11 180.1 179.9
C11 C13 C14 H13 180.0 180.0
C13 C14 C15 C16 359.7 360.0
N4 C14 C15 C13 180.0 180.1
C15 C14 N4 HN4 180.2 180.0
C14 C15 C9 C18 181.6 180.1
C9 C15 C14 C16 179.9 180.0
C15 C14 C13 H13 180.2 180.1
C14 C15 C16 C17 0.1 0.0
C14 C15 C16 H16 180.1 180.0
C16 C15 C9 C18 1.5 0.1
C9 C15 C16 C14 180.1 180.0
C11 C17 C16 C15 0.2 360.0
C15 C16 C17 C19 180.1 180.0
C17 C16 C15 H16 180.0 180.0
S1 C19 C17 C16 0.1 180.0
N5 C19 C17 C16 180.8 360.0
C11 C17 C16 C19 180.1 180.0
C16 C17 C11 H11 179.8 180.0
C15 C16 C17 H16 180.0 180.0
S1 C19 C17 N5 179.3 180.0
C11 C17 C19 C16 179.9 180.0
C19 C17 C11 H11 359.9 0.0
C19 C17 C16 H16 0.1 0.0
C2 C1 H1 C6 180.0 180.3
H1 C1 C2 C3 179.8 179.7
H1 C1 C2 H2 359.8 359.7
H1 C1 C6 C5 180.3 180.3
H1 C1 C6 C8 0.9 0.3
H2 C2 C1 C6 179.8 180.0
C1 C2 H2 C3 180.0 180.0
H2 C2 C1 H1 359.8 359.7
H2 C2 C3 C4 179.9 180.1
H2 C2 C3 CL1 359.5 360.0
HN3 N3 C10 C7 180.0 60.0
HN3 N3 C10 C8 54.0 300.0
C10 N3 HN3 HN3A 120.0 124.0
HN3 N3 C10 H10 297.9 180.0
HN3A N3 C10 C7 300.0 184.0
HN3A N3 C10 C8 174.0 64.0
C10 N3 HN3A HN3 240.0 236.0
HN3A N3 C10 H10 57.9 304.0
H4 C4 C3 CL1 0.6 360.0
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 179.9 180.1
H4 C4 C5 H5 359.9 0.0
HN4 N4 N1 C9 180.0 180.0
N1 N4 HN4 C14 180.0 180.1
HN4 N4 C14 C13 0.2 0.1
HN4 N4 C14 C15 180.2 180.0
C4 C5 H5 C6 180.0 180.1
H5 C5 C4 H4 359.9 0.0
H5 C5 C6 C8 359.3 0.1
C7 N6 HN6 C12 237.1 179.9
HN6 N6 C7 C10 201.6 0.1
HN6 N6 C7 H7 321.6 120.0
HN6 N6 C7 H7A 81.6 240.0
H7 C7 N6 C12 201.6 300.0
N6 C7 H7 C10 238.5 240.0
H7 C7 N6 HN6 321.6 120.0
N6 C7 H7 H7A 119.3 120.0
H7 C7 C10 C8 80.2 55.0
C10 C7 H7 H7A 240.8 240.0
H7 C7 C10 H10 196.1 174.9
H7A C7 N6 C12 321.6 59.9
N6 C7 H7A C10 121.5 120.1
H7A C7 N6 HN6 81.6 240.0
N6 C7 H7A H7 240.7 240.0
H7A C7 C10 C8 320.2 295.0
C10 C7 H7A H7 119.3 119.9
H7A C7 C10 H10 76.1 55.0
C6 C8 H8 C10 235.9 240.0
C6 C8 H8 H8A 117.9 120.0
C10 C8 H8 H8A 242.0 240.0
H8 C8 C10 H10 182.9 295.0
C6 C8 H8A C10 124.1 120.0
C6 C8 H8A H8 242.1 240.0
C10 C8 H8A H8 118.0 120.0
H8A C8 C10 H10 62.9 175.1
N3 C10 H10 C7 241.3 240.0
N3 C10 H10 C8 120.1 120.0
H10 C10 N3 HN3 297.9 180.0
H10 C10 N3 HN3A 57.9 304.0
C7 C10 H10 C8 238.8 240.0
H10 C10 C7 H7 196.1 174.9
H10 C10 C7 H7A 76.1 55.0
H10 C10 C8 H8 182.9 295.0
H10 C10 C8 H8A 62.9 175.1
C13 C11 H11 C17 180.0 180.0
H11 C11 C13 C14 180.1 179.9
H11 C11 C13 H13 0.0 359.9
H11 C11 C17 C16 179.8 180.0
H11 C11 C17 C19 359.9 0.0
H13 C13 C11 C17 180.0 180.0
C11 C13 H13 C14 180.0 180.0
H13 C13 C11 H11 0.0 359.9
H13 C13 C14 C15 180.2 180.1
C15 C16 H16 C17 180.0 180.0
H16 C16 C17 C19 0.1 0.0
C9 C18 H18 H18A 120.0 120.0
C9 C18 H18 H18B 240.0 240.0
H18A C18 H18 H18B 120.0 120.0
C9 C18 H18A H18 240.0 240.0
C9 C18 H18A H18B 120.0 120.0
H18 C18 H18A H18B 240.0 240.0
C9 C18 H18B H18 120.0 119.9
C9 C18 H18B H18A 240.1 240.0
H18 C18 H18B H18A 120.0 120.0
C3 CL1 HL1 HL1A 120.0 120.0
C3 CL1 HL1 HL1B 240.0 240.1
HL1A CL1 HL1 HL1B 120.0 120.0
C3 CL1 HL1A HL1 240.0 240.0
C3 CL1 HL1A HL1B 120.0 119.9
HL1 CL1 HL1A HL1B 240.0 240.0
C3 CL1 HL1B HL1 120.0 120.0
C3 CL1 HL1B HL1A 240.0 240.0
HL1 CL1 HL1B HL1A 120.0 120.1