Atom Nomenclature for L8B

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L8B

Atom Name (V3) Atom Name (V2)
CAA CAA
CAW CAW
CAK CAK
NAQ NAQ
OAT OAT
CAZ CAZ
CAM CAM
CAU CAU
OAB OAB
N N
CD2 CD2
CG CG
OD1 OD1
CB CB
CA CA
C C
O O
NAR NAR
CAL CAL
CAX CAX
CAF CAF
CAH CAH
CAE CAE
CAG CAG
CAY CAY
CBA CBA
CAJ CAJ
NAP NAP
CAI CAI
OAS OAS
HAA1 HAA1
HAA2 HAA2
HAA3 HAA3
HAK HAK
HAM1 HAM1
HAM2 HAM2
HD21 HD21
HD22 HD22
HA HA
HG HG
HD1 HD1
HB1C HB1C
HB2C HB2C
HAR HAR
HAL1 HAL1
HAL2 HAL2
HAF HAF
HAE HAE
HAH HAH
HAG HAG
HAJ HAJ
HAI HAI