Atom Nomenclature for L88

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L88

Atom Name (V3) Atom Name (V2)
O2 O2
C11 C11
C12 C12
C13 C13
C27 C27
C14 C14
C17 C17
C16 C16
C18 C18
S7 S7
C29 C29
C20 C20
C21 C21
C26 C26
C25 C25
C24 C24
C23 C23
C22 C22
C19 C19
C15 C15
C28 C28
N2 N2
C7 C7
C8 C8
C9 C9
C10 C10
O4 O4
O4E O4E
C6 C6
O1 O1
N1 N1
C53 C53
C54 C54
C55 C55
O56 O56
C57 C57
C58 C58
O67 O67
C68 C68
C69 C69
O70 O70
C71 C71
C72 C72
C73 C73
N74 N74
C75 C75
O77 O77
C76 C76
C78 C78
C83 C83
C79 C79
O80 O80
O81 O81
N82 N82
C84 C84
O85 O85
C86 C86
C5 C5
C87 C87
C88 C88
C89 C89
C90 C90
C91 C91
C92 C92
C93 C93
C94 C94
C95 C95
C96 C96
S97 S97
C98 C98
C99 C99
C1 C1
C2 C2
C3 C3
C4 C4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65
H66 H66