PDB Chemical Component L87
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L87
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7 |
C8 |
1.528 |
1.531 |
| C7 |
C6 |
1.530 |
1.530 |
| C9 |
C8 |
1.515 |
1.530 |
| C6 |
N3 |
1.466 |
1.465 |
| C14 |
C15 |
1.391 |
1.379 |
| C14 |
C13 |
1.394 |
1.384 |
| C18 |
N5 |
1.471 |
1.465 |
| N1 |
C1 |
1.397 |
1.325 |
| N1 |
C2 |
1.383 |
1.330 |
| N3 |
C1 |
1.373 |
1.371 |
| N3 |
C5 |
1.364 |
1.388 |
| C15 |
C10 |
1.393 |
1.396 |
| C13 |
C12 |
1.393 |
1.384 |
| C1 |
N2 |
1.335 |
1.360 |
| C10 |
C5 |
1.497 |
1.481 |
| C10 |
C11 |
1.396 |
1.395 |
| C12 |
C11 |
1.395 |
1.379 |
| C5 |
C4 |
1.433 |
1.344 |
| C2 |
N5 |
1.334 |
1.387 |
| C2 |
C3 |
1.398 |
1.394 |
| N5 |
C17 |
1.342 |
1.346 |
| C11 |
C26 |
1.513 |
1.507 |
| N2 |
C3 |
1.379 |
1.387 |
| N2 |
C4 |
1.396 |
1.380 |
| C3 |
C16 |
1.397 |
1.405 |
| C17 |
O2 |
1.258 |
1.215 |
| C17 |
N4 |
1.364 |
1.344 |
| C16 |
N4 |
1.360 |
1.349 |
| C16 |
O3 |
1.242 |
1.219 |
| N4 |
H1 |
1.000 |
0.969 |
| C18 |
H2 |
1.100 |
1.091 |
| C18 |
H3 |
1.100 |
1.090 |
| C18 |
H4 |
1.100 |
1.091 |
| C6 |
H5 |
1.100 |
1.091 |
| C6 |
H6 |
1.100 |
1.089 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H8 |
1.100 |
1.090 |
| C8 |
H9 |
1.100 |
1.091 |
| C8 |
H10 |
1.100 |
1.089 |
| C9 |
H11 |
1.100 |
1.090 |
| C9 |
H12 |
1.100 |
1.090 |
| C9 |
H13 |
1.099 |
1.091 |
| C4 |
H14 |
1.080 |
1.079 |
| C26 |
H15 |
1.100 |
1.089 |
| C26 |
H16 |
1.101 |
1.090 |
| C26 |
H17 |
1.100 |
1.090 |
| C12 |
H18 |
1.080 |
1.080 |
| C13 |
H19 |
1.080 |
1.080 |
| C14 |
H20 |
1.079 |
1.080 |
| C15 |
H21 |
1.080 |
1.080 |
Bond Angles for L87
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C7 |
H7 |
108.7 |
109.5 |
| C8 |
C7 |
H8 |
108.7 |
109.5 |
| C7 |
C8 |
H9 |
109.3 |
109.4 |
| C7 |
C8 |
H10 |
109.3 |
109.5 |
| C7 |
C6 |
H5 |
109.2 |
109.5 |
| C7 |
C6 |
H6 |
109.2 |
109.5 |
| C9 |
C8 |
H9 |
109.2 |
109.4 |
| C9 |
C8 |
H10 |
109.2 |
109.5 |
| C6 |
N3 |
C5 |
135.3 |
126.2 |
| C15 |
C14 |
H20 |
119.9 |
120.0 |
| C14 |
C15 |
H21 |
119.9 |
120.1 |
| C14 |
C13 |
H19 |
120.0 |
119.9 |
| N1 |
C1 |
N2 |
115.1 |
109.2 |
| N3 |
C5 |
C4 |
110.4 |
108.0 |
| C13 |
C12 |
H18 |
120.0 |
119.9 |
| C1 |
N2 |
C4 |
111.5 |
108.4 |
| C10 |
C11 |
C26 |
121.4 |
120.1 |
| N2 |
C4 |
C5 |
102.3 |
108.2 |
| C5 |
C4 |
H14 |
128.9 |
125.9 |
| C2 |
C3 |
C16 |
118.7 |
119.2 |
| C11 |
C26 |
H15 |
109.5 |
109.5 |
| C11 |
C26 |
H16 |
109.5 |
109.5 |
| C11 |
C26 |
H17 |
109.4 |
109.5 |
| N2 |
C4 |
H14 |
128.9 |
125.9 |
| C3 |
C16 |
O3 |
123.3 |
120.3 |
| C17 |
N4 |
H1 |
119.0 |
119.5 |
| C16 |
N4 |
H1 |
119.0 |
119.5 |
| H2 |
C18 |
H3 |
109.4 |
109.5 |
| H2 |
C18 |
H4 |
109.4 |
109.5 |
| H3 |
C18 |
H4 |
109.5 |
109.5 |
| H5 |
C6 |
H6 |
109.4 |
109.4 |
| H7 |
C7 |
H8 |
109.5 |
109.5 |
| H9 |
C8 |
H10 |
109.4 |
109.5 |
| H11 |
C9 |
H12 |
109.5 |
109.5 |
| H11 |
C9 |
H13 |
109.5 |
109.5 |
| H12 |
C9 |
H13 |
109.4 |
109.4 |
| H15 |
C26 |
H16 |
109.5 |
109.5 |
| H15 |
C26 |
H17 |
109.5 |
109.4 |
| H16 |
C26 |
H17 |
109.5 |
109.4 |
Torsion Angles for L87
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C7 |
C6 |
H5 |
175.0 |
60.0 |
| C8 |
C7 |
C6 |
H6 |
294.6 |
300.0 |
| C9 |
C8 |
C7 |
H9 |
239.9 |
240.1 |
| C9 |
C8 |
C7 |
H10 |
120.2 |
120.0 |
| H7 |
C7 |
C8 |
H8 |
240.9 |
120.0 |
| H9 |
C8 |
C7 |
H10 |
240.3 |
240.0 |
| C7 |
C6 |
N3 |
C5 |
244.4 |
269.9 |
| H5 |
C6 |
C7 |
H6 |
240.4 |
120.0 |
| C9 |
C8 |
C7 |
H7 |
304.4 |
60.0 |
| C9 |
C8 |
C7 |
H8 |
63.5 |
300.0 |
| C7 |
C8 |
C9 |
H9 |
120.1 |
119.9 |
| C7 |
C8 |
C9 |
H10 |
239.8 |
240.0 |
| H9 |
C8 |
C9 |
H10 |
119.7 |
120.0 |
| C6 |
N3 |
C5 |
C4 |
181.2 |
180.0 |
| C15 |
C14 |
C13 |
H19 |
180.5 |
179.7 |
| C14 |
C13 |
C12 |
H18 |
179.6 |
180.0 |
| N1 |
C1 |
N2 |
C4 |
181.1 |
179.9 |
| N3 |
C1 |
N2 |
C4 |
359.8 |
360.0 |
| N2 |
C4 |
C5 |
N3 |
1.7 |
359.9 |
| N3 |
C5 |
C4 |
H14 |
181.8 |
180.0 |
| C1 |
N2 |
C4 |
C5 |
359.1 |
0.1 |
| C1 |
N2 |
C4 |
H14 |
179.0 |
179.9 |
| C10 |
C5 |
C4 |
H14 |
1.1 |
0.2 |
| C10 |
C11 |
C26 |
H15 |
90.5 |
84.7 |
| C10 |
C11 |
C26 |
H16 |
210.5 |
204.7 |
| C10 |
C11 |
C26 |
H17 |
330.4 |
324.7 |
| C12 |
C11 |
C26 |
H15 |
269.6 |
264.8 |
| C12 |
C11 |
C26 |
H16 |
29.6 |
24.8 |
| C12 |
C11 |
C26 |
H17 |
149.6 |
144.8 |
| N2 |
C4 |
C5 |
H14 |
180.0 |
179.8 |
| C2 |
C3 |
C16 |
O3 |
180.2 |
180.1 |
| N5 |
C17 |
N4 |
H1 |
180.2 |
180.3 |
| H15 |
C26 |
C11 |
H16 |
240.0 |
240.0 |
| H15 |
C26 |
C11 |
H17 |
120.0 |
120.0 |
| H16 |
C26 |
C11 |
H17 |
240.0 |
240.0 |
| N3 |
C5 |
C4 |
N2 |
1.7 |
359.9 |
| C5 |
C4 |
N2 |
H14 |
180.0 |
180.2 |
| C3 |
C16 |
N4 |
H1 |
179.7 |
179.9 |
| C16 |
N4 |
C17 |
H1 |
180.0 |
180.1 |
| C17 |
N4 |
C16 |
H1 |
180.0 |
179.9 |
| O3 |
C16 |
N4 |
H1 |
359.7 |
359.8 |
| H3 |
C18 |
H2 |
H4 |
120.0 |
120.0 |
| H2 |
C18 |
H3 |
H4 |
240.1 |
240.0 |
| H2 |
C18 |
H4 |
H3 |
119.9 |
120.0 |
| C7 |
C6 |
H5 |
H6 |
119.5 |
240.0 |
| H5 |
C6 |
N3 |
C5 |
124.2 |
29.9 |
| C7 |
C6 |
H6 |
H5 |
240.5 |
120.0 |
| H6 |
C6 |
N3 |
C5 |
4.6 |
149.9 |
| C8 |
C7 |
H7 |
H8 |
118.6 |
240.0 |
| H7 |
C7 |
C8 |
H9 |
64.6 |
180.0 |
| H7 |
C7 |
C8 |
H10 |
184.3 |
300.0 |
| H7 |
C7 |
C6 |
H5 |
54.5 |
180.0 |
| H7 |
C7 |
C6 |
H6 |
174.1 |
60.0 |
| C8 |
C7 |
H8 |
H7 |
241.4 |
120.0 |
| H8 |
C7 |
C8 |
H9 |
183.7 |
59.9 |
| H8 |
C7 |
C8 |
H10 |
303.4 |
180.0 |
| H8 |
C7 |
C6 |
H5 |
295.5 |
300.0 |
| H8 |
C7 |
C6 |
H6 |
55.1 |
180.0 |
| H9 |
C8 |
C7 |
H7 |
64.6 |
180.0 |
| H9 |
C8 |
C7 |
H8 |
183.7 |
59.9 |
| C7 |
C8 |
H9 |
H10 |
119.6 |
120.0 |
| C9 |
C8 |
H9 |
H10 |
240.4 |
240.0 |
| H10 |
C8 |
C7 |
H7 |
184.3 |
300.0 |
| H10 |
C8 |
C7 |
H8 |
303.4 |
180.0 |
| C7 |
C8 |
H10 |
H9 |
240.4 |
240.0 |
| C9 |
C8 |
H10 |
H9 |
119.5 |
120.0 |
| H11 |
C9 |
C8 |
H9 |
59.9 |
60.0 |
| H11 |
C9 |
C8 |
H10 |
300.2 |
300.0 |
| H12 |
C9 |
H11 |
H13 |
120.0 |
119.9 |
| H12 |
C9 |
C8 |
H9 |
179.9 |
180.1 |
| H12 |
C9 |
C8 |
H10 |
60.2 |
60.0 |
| H11 |
C9 |
H12 |
H13 |
240.0 |
240.0 |
| H13 |
C9 |
C8 |
H9 |
299.8 |
300.0 |
| H13 |
C9 |
C8 |
H10 |
180.2 |
180.0 |
| H11 |
C9 |
H13 |
H12 |
120.0 |
120.0 |
| N2 |
C4 |
H14 |
C5 |
180.0 |
180.2 |
| C11 |
C26 |
H15 |
H16 |
120.0 |
120.0 |
| C11 |
C26 |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
C26 |
H15 |
H17 |
120.0 |
120.0 |
| C11 |
C26 |
H16 |
H15 |
240.0 |
240.0 |
| C11 |
C26 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
C26 |
H16 |
H17 |
240.0 |
240.0 |
| C11 |
C26 |
H17 |
H15 |
120.0 |
120.0 |
| C11 |
C26 |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
C26 |
H17 |
H16 |
120.0 |
120.0 |
| H19 |
C13 |
C12 |
H18 |
359.6 |
359.9 |
| H20 |
C14 |
C15 |
H21 |
0.3 |
359.5 |
| H20 |
C14 |
C13 |
H19 |
0.4 |
0.3 |
| H21 |
C15 |
C14 |
H20 |
0.3 |
359.5 |