Atom Nomenclature for L76

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L76

Atom Name (V3) Atom Name (V2)
F7 F1
C11 C1
C10 C2
C9 C3
C12 C4
C13 C5
C8 C6
C1 C7
N1 N1
C5 C8
C6 C9
C7 C10
C24 C11
N5 N2
C26 C12
C25 C13
N4 N3
N3 N4
N2 N5
C4 C14
C3 C15
O1 O1
C2 C16
O2 O2
C14 C17
C21 C18
C15 C19
C20 C20
C19 C21
C23 C22
F6 F2
F5 F3
F4 F4
C18 C23
C17 C24
C16 C25
C22 C26
F1 F5
F2 F6
F3 F7
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H7 H7
H8 H8
H9 H9
H10 H10
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30