PDB Chemical Component L6E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L6E
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C02 |
C03 |
1.520 |
1.534 |
C02 |
C01 |
1.521 |
1.526 |
C03 |
C04 |
1.524 |
1.526 |
C01 |
C06 |
1.510 |
1.506 |
C04 |
C05 |
1.514 |
1.509 |
C06 |
C05 |
1.488 |
1.353 |
C06 |
C10 |
1.388 |
1.402 |
C05 |
N07 |
1.339 |
1.363 |
C10 |
C09 |
1.387 |
1.389 |
N07 |
C08 |
1.341 |
1.342 |
C09 |
C08 |
1.488 |
1.419 |
C09 |
C11 |
1.502 |
1.471 |
C08 |
O22 |
1.248 |
1.219 |
O23 |
C11 |
1.222 |
1.217 |
C11 |
N12 |
1.331 |
1.347 |
O17 |
C18 |
1.427 |
1.452 |
O17 |
C16 |
1.454 |
1.348 |
N12 |
C13 |
1.453 |
1.465 |
O25 |
C19 |
1.221 |
1.214 |
C18 |
C19 |
1.513 |
1.507 |
C15 |
C16 |
1.509 |
1.470 |
C15 |
C14 |
1.525 |
1.330 |
C19 |
N20 |
1.331 |
1.348 |
C16 |
O24 |
1.220 |
1.215 |
C13 |
C14 |
1.526 |
1.507 |
C21 |
N20 |
1.451 |
1.464 |
C10 |
H1 |
1.080 |
1.080 |
N12 |
H2 |
1.000 |
0.970 |
C13 |
H3 |
1.100 |
1.090 |
C13 |
H4 |
1.100 |
1.090 |
C15 |
H5 |
1.080 |
1.080 |
C21 |
H7 |
1.100 |
1.090 |
C21 |
H8 |
1.100 |
1.090 |
C21 |
H9 |
1.100 |
1.090 |
C01 |
H10 |
1.101 |
1.091 |
C01 |
H11 |
1.101 |
1.090 |
C02 |
H12 |
1.100 |
1.090 |
C02 |
H13 |
1.100 |
1.090 |
C03 |
H14 |
1.100 |
1.090 |
C03 |
H15 |
1.100 |
1.090 |
C04 |
H16 |
1.100 |
1.090 |
C04 |
H17 |
1.100 |
1.091 |
C14 |
H19 |
1.080 |
1.080 |
C18 |
H21 |
1.100 |
1.090 |
C18 |
H22 |
1.100 |
1.091 |
N20 |
H23 |
1.000 |
0.970 |
N07 |
H6 |
0.999 |
0.970 |
Bond Angles for L6E
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C02 |
C03 |
C04 |
111.1 |
108.3 |
C03 |
C02 |
H12 |
109.4 |
109.7 |
C03 |
C02 |
H13 |
109.4 |
109.7 |
C02 |
C03 |
H14 |
109.1 |
109.7 |
C02 |
C03 |
H15 |
109.0 |
109.7 |
C02 |
C01 |
C06 |
110.2 |
110.8 |
C02 |
C01 |
H10 |
109.3 |
109.3 |
C02 |
C01 |
H11 |
109.3 |
109.2 |
C03 |
C04 |
C05 |
111.7 |
110.7 |
C04 |
C03 |
H14 |
109.1 |
109.7 |
C04 |
C03 |
H15 |
109.1 |
109.7 |
C03 |
C04 |
H16 |
108.9 |
109.3 |
C03 |
C04 |
H17 |
108.9 |
109.2 |
C01 |
C06 |
C05 |
121.2 |
122.9 |
C06 |
C01 |
H10 |
109.3 |
109.2 |
C06 |
C01 |
H11 |
109.3 |
109.2 |
C04 |
C05 |
N07 |
119.2 |
116.9 |
C05 |
C04 |
H16 |
108.9 |
109.2 |
C05 |
C04 |
H17 |
108.9 |
109.2 |
C06 |
C05 |
N07 |
119.8 |
120.5 |
C06 |
C10 |
C09 |
119.3 |
119.7 |
C06 |
C10 |
H1 |
120.3 |
120.1 |
C05 |
N07 |
C08 |
121.8 |
121.9 |
C05 |
N07 |
H6 |
119.1 |
119.0 |
C10 |
C09 |
C08 |
118.9 |
118.5 |
C10 |
C09 |
C11 |
119.4 |
120.8 |
C09 |
C10 |
H1 |
120.3 |
120.2 |
N07 |
C08 |
O22 |
119.5 |
120.2 |
C09 |
C08 |
O22 |
120.0 |
120.2 |
C11 |
N12 |
H2 |
119.5 |
120.0 |
O17 |
C18 |
H21 |
109.4 |
109.5 |
O17 |
C18 |
H22 |
109.4 |
109.4 |
O17 |
C16 |
O24 |
119.7 |
120.0 |
N12 |
C13 |
C14 |
112.3 |
109.5 |
C13 |
N12 |
H2 |
119.5 |
120.0 |
N12 |
C13 |
H3 |
108.8 |
109.5 |
N12 |
C13 |
H4 |
108.7 |
109.5 |
C18 |
C19 |
N20 |
116.8 |
120.0 |
C19 |
C18 |
H21 |
109.4 |
109.5 |
C19 |
C18 |
H22 |
109.4 |
109.5 |
C14 |
C15 |
C16 |
112.4 |
120.0 |
C15 |
C16 |
O24 |
121.6 |
120.0 |
C16 |
C15 |
H5 |
123.8 |
120.0 |
C13 |
C14 |
C15 |
109.6 |
120.0 |
C14 |
C15 |
H5 |
123.8 |
120.0 |
C15 |
C14 |
H19 |
125.2 |
120.0 |
C21 |
N20 |
C19 |
121.8 |
120.0 |
C19 |
N20 |
H23 |
119.1 |
120.0 |
C14 |
C13 |
H3 |
108.8 |
109.5 |
C14 |
C13 |
H4 |
108.8 |
109.4 |
C13 |
C14 |
H19 |
125.2 |
120.0 |
N20 |
C21 |
H7 |
109.5 |
109.5 |
N20 |
C21 |
H8 |
109.5 |
109.5 |
N20 |
C21 |
H9 |
109.5 |
109.5 |
C21 |
N20 |
H23 |
119.1 |
120.0 |
H3 |
C13 |
H4 |
109.5 |
109.5 |
H7 |
C21 |
H8 |
109.5 |
109.4 |
H7 |
C21 |
H9 |
109.5 |
109.4 |
H8 |
C21 |
H9 |
109.4 |
109.5 |
H10 |
C01 |
H11 |
109.5 |
109.2 |
H12 |
C02 |
H13 |
109.5 |
109.7 |
H14 |
C03 |
H15 |
109.5 |
109.7 |
H16 |
C04 |
H17 |
109.5 |
109.2 |
H21 |
C18 |
H22 |
109.5 |
109.5 |
Torsion Angles for L6E
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C03 |
C02 |
C01 |
C06 |
53.8 |
50.6 |
C03 |
C02 |
C01 |
H10 |
173.9 |
171.0 |
C03 |
C02 |
C01 |
H11 |
293.7 |
290.3 |
C02 |
C03 |
C04 |
C05 |
45.9 |
51.1 |
C04 |
C03 |
C02 |
H14 |
239.7 |
240.3 |
C04 |
C03 |
C02 |
H15 |
120.2 |
119.7 |
C02 |
C03 |
C04 |
H16 |
166.2 |
171.3 |
C02 |
C03 |
C04 |
H17 |
285.5 |
290.7 |
H12 |
C02 |
C03 |
H13 |
240.1 |
120.6 |
H14 |
C03 |
C02 |
H15 |
240.5 |
239.4 |
C02 |
C01 |
C06 |
C05 |
339.1 |
342.4 |
C06 |
C01 |
C02 |
H10 |
239.9 |
239.7 |
C06 |
C01 |
C02 |
H11 |
120.1 |
120.3 |
H10 |
C01 |
C02 |
H11 |
240.3 |
240.6 |
C04 |
C03 |
C02 |
H12 |
50.9 |
171.0 |
C04 |
C03 |
C02 |
H13 |
170.7 |
50.4 |
C02 |
C03 |
C04 |
H14 |
120.2 |
119.7 |
C02 |
C03 |
C04 |
H15 |
239.8 |
240.3 |
C03 |
C04 |
C05 |
N07 |
167.8 |
162.2 |
C05 |
C04 |
C03 |
H16 |
239.7 |
239.7 |
C05 |
C04 |
C03 |
H17 |
120.3 |
120.3 |
H14 |
C03 |
C04 |
H15 |
119.5 |
120.6 |
H16 |
C04 |
C03 |
H17 |
240.7 |
240.6 |
C02 |
C01 |
C06 |
H10 |
120.1 |
120.4 |
C02 |
C01 |
C06 |
H11 |
239.9 |
239.7 |
C01 |
C06 |
C05 |
N07 |
179.9 |
180.5 |
C01 |
C06 |
C10 |
C09 |
179.9 |
179.8 |
C01 |
C06 |
C10 |
H1 |
359.9 |
359.5 |
H10 |
C01 |
C06 |
H11 |
119.8 |
119.3 |
C05 |
C04 |
C03 |
H14 |
285.6 |
291.4 |
C05 |
C04 |
C03 |
H15 |
166.1 |
170.8 |
C03 |
C04 |
C05 |
H16 |
120.3 |
120.3 |
C03 |
C04 |
C05 |
H17 |
239.7 |
239.7 |
C01 |
C06 |
C05 |
C04 |
0.5 |
0.7 |
C06 |
C05 |
C04 |
N07 |
179.5 |
179.8 |
C04 |
C05 |
N07 |
C08 |
179.9 |
179.7 |
C04 |
C05 |
N07 |
H6 |
359.9 |
359.4 |
H16 |
C04 |
C05 |
H17 |
119.4 |
119.4 |
C05 |
C06 |
C01 |
H10 |
219.0 |
222.0 |
C05 |
C06 |
C01 |
H11 |
99.2 |
102.7 |
C04 |
C05 |
C06 |
N07 |
180.5 |
180.2 |
C06 |
C05 |
C04 |
H16 |
227.0 |
221.7 |
C06 |
C05 |
C04 |
H17 |
107.6 |
102.4 |
C05 |
C06 |
C10 |
C09 |
0.4 |
359.8 |
C05 |
C06 |
C10 |
H1 |
180.4 |
179.6 |
C06 |
C05 |
N07 |
C08 |
0.4 |
359.8 |
C06 |
C05 |
N07 |
H6 |
180.4 |
179.6 |
C06 |
C10 |
C09 |
C08 |
359.9 |
359.6 |
C06 |
C10 |
C09 |
C11 |
179.6 |
179.6 |
C09 |
C10 |
C06 |
H1 |
180.0 |
180.3 |
N07 |
C05 |
C04 |
H16 |
47.5 |
41.9 |
N07 |
C05 |
C04 |
H17 |
288.2 |
282.5 |
C05 |
N07 |
C08 |
O22 |
179.6 |
180.0 |
C06 |
C10 |
C09 |
H1 |
180.0 |
179.7 |
C10 |
C09 |
C08 |
O22 |
180.2 |
180.3 |
C05 |
N07 |
C08 |
H6 |
180.0 |
179.8 |
C09 |
C08 |
N07 |
O22 |
180.3 |
179.6 |
C05 |
N07 |
C08 |
C09 |
359.9 |
359.6 |
C10 |
C09 |
C08 |
C11 |
179.7 |
180.0 |
C08 |
C09 |
C10 |
H1 |
179.9 |
179.9 |
N07 |
C08 |
C09 |
O22 |
179.7 |
180.4 |
C10 |
C09 |
C11 |
C08 |
180.3 |
180.0 |
C11 |
C09 |
C10 |
H1 |
359.6 |
359.9 |
C11 |
C09 |
C08 |
O22 |
0.5 |
0.3 |
C09 |
C11 |
N12 |
H2 |
354.5 |
354.9 |
O23 |
C11 |
N12 |
H2 |
173.9 |
174.9 |
C10 |
C09 |
C11 |
N12 |
171.8 |
185.8 |
C11 |
N12 |
C13 |
C14 |
107.8 |
180.0 |
C13 |
N12 |
C11 |
H2 |
180.0 |
180.0 |
C11 |
N12 |
C13 |
H3 |
228.2 |
300.0 |
C11 |
N12 |
C13 |
H4 |
347.4 |
60.0 |
C18 |
O17 |
C16 |
O24 |
39.4 |
0.1 |
C19 |
C18 |
O17 |
H21 |
239.9 |
120.1 |
C19 |
C18 |
O17 |
H22 |
120.0 |
240.1 |
H21 |
C18 |
O17 |
H22 |
240.1 |
120.0 |
C15 |
C16 |
O17 |
O24 |
178.5 |
180.0 |
O17 |
C16 |
C15 |
H5 |
333.0 |
360.0 |
C11 |
N12 |
C13 |
H2 |
180.0 |
180.0 |
N12 |
C13 |
C14 |
C15 |
313.0 |
125.0 |
C14 |
C13 |
N12 |
H3 |
239.6 |
240.0 |
C14 |
C13 |
N12 |
H4 |
120.4 |
120.0 |
N12 |
C13 |
C14 |
H19 |
133.0 |
305.0 |
H3 |
C13 |
N12 |
H4 |
240.9 |
240.0 |
O25 |
C19 |
C18 |
H21 |
266.3 |
120.0 |
O25 |
C19 |
C18 |
H22 |
146.4 |
240.0 |
O25 |
C19 |
N20 |
H23 |
319.1 |
180.0 |
O17 |
C18 |
C19 |
H21 |
120.1 |
239.9 |
O17 |
C18 |
C19 |
H22 |
239.9 |
119.9 |
C21 |
N20 |
C19 |
C18 |
319.1 |
180.0 |
C18 |
C19 |
N20 |
H23 |
139.1 |
360.0 |
H21 |
C18 |
C19 |
H22 |
119.9 |
240.0 |
O17 |
C16 |
C15 |
O24 |
181.6 |
180.0 |
C13 |
C14 |
C15 |
C16 |
195.0 |
180.0 |
C14 |
C15 |
C16 |
H5 |
180.0 |
180.1 |
C16 |
C15 |
C14 |
H19 |
15.0 |
359.9 |
C14 |
C15 |
C16 |
O24 |
331.4 |
0.1 |
C16 |
C15 |
C14 |
H5 |
180.0 |
179.9 |
C15 |
C14 |
C13 |
H3 |
192.6 |
5.0 |
C15 |
C14 |
C13 |
H4 |
73.4 |
245.0 |
C13 |
C14 |
C15 |
H19 |
180.0 |
180.1 |
N20 |
C19 |
C18 |
H21 |
86.3 |
300.0 |
N20 |
C19 |
C18 |
H22 |
326.4 |
60.1 |
C19 |
N20 |
C21 |
H7 |
180.0 |
300.0 |
C19 |
N20 |
C21 |
H8 |
300.0 |
60.0 |
C19 |
N20 |
C21 |
H9 |
60.0 |
180.0 |
C21 |
N20 |
C19 |
H23 |
180.0 |
180.0 |
O24 |
C16 |
C15 |
H5 |
151.4 |
180.0 |
C14 |
C13 |
N12 |
H2 |
287.8 |
360.0 |
N12 |
C13 |
C14 |
H3 |
120.4 |
120.0 |
N12 |
C13 |
C14 |
H4 |
239.6 |
240.0 |
C13 |
C14 |
C15 |
H5 |
15.0 |
0.1 |
C15 |
C14 |
C13 |
H19 |
180.0 |
179.9 |
H3 |
C13 |
C14 |
H4 |
119.2 |
120.0 |
C18 |
C19 |
N20 |
C21 |
319.1 |
180.0 |
C19 |
N20 |
C21 |
H23 |
180.0 |
180.0 |
H7 |
C21 |
N20 |
H8 |
240.0 |
240.0 |
H7 |
C21 |
N20 |
H9 |
120.0 |
120.0 |
H8 |
C21 |
N20 |
H9 |
240.0 |
240.0 |
C06 |
C10 |
H1 |
C09 |
180.0 |
180.3 |
H1 |
C10 |
C09 |
C08 |
179.9 |
179.9 |
H1 |
C10 |
C09 |
C11 |
359.6 |
359.9 |
H2 |
N12 |
C13 |
C14 |
287.8 |
360.0 |
H2 |
N12 |
C13 |
H3 |
48.2 |
120.0 |
H2 |
N12 |
C13 |
H4 |
167.4 |
240.0 |
N12 |
C13 |
H3 |
C14 |
237.4 |
240.0 |
H3 |
C13 |
N12 |
H2 |
48.2 |
120.0 |
N12 |
C13 |
H3 |
H4 |
118.7 |
120.0 |
H3 |
C13 |
C14 |
C15 |
192.6 |
5.0 |
C14 |
C13 |
H3 |
H4 |
241.3 |
240.1 |
H3 |
C13 |
C14 |
H19 |
12.6 |
185.0 |
N12 |
C13 |
H4 |
C14 |
122.6 |
120.0 |
H4 |
C13 |
N12 |
H2 |
167.4 |
240.0 |
N12 |
C13 |
H4 |
H3 |
241.3 |
240.0 |
H4 |
C13 |
C14 |
C15 |
73.4 |
245.0 |
C14 |
C13 |
H4 |
H3 |
118.7 |
120.0 |
H4 |
C13 |
C14 |
H19 |
253.4 |
65.0 |
C14 |
C15 |
H5 |
C16 |
180.0 |
179.9 |
H5 |
C15 |
C16 |
O24 |
151.4 |
180.0 |
H5 |
C15 |
C14 |
H19 |
194.9 |
180.0 |
H7 |
C21 |
N20 |
C19 |
180.0 |
300.0 |
N20 |
C21 |
H7 |
H8 |
120.0 |
120.0 |
N20 |
C21 |
H7 |
H9 |
240.0 |
240.0 |
H7 |
C21 |
N20 |
H23 |
360.0 |
120.0 |
H8 |
C21 |
H7 |
H9 |
120.0 |
119.9 |
H8 |
C21 |
N20 |
C19 |
300.0 |
60.0 |
N20 |
C21 |
H8 |
H7 |
240.0 |
240.0 |
N20 |
C21 |
H8 |
H9 |
120.0 |
120.1 |
H8 |
C21 |
N20 |
H23 |
120.0 |
240.0 |
H7 |
C21 |
H8 |
H9 |
240.0 |
240.1 |
H9 |
C21 |
N20 |
C19 |
60.0 |
180.0 |
N20 |
C21 |
H9 |
H7 |
120.0 |
120.0 |
N20 |
C21 |
H9 |
H8 |
240.0 |
240.0 |
H9 |
C21 |
N20 |
H23 |
240.0 |
0.0 |
H7 |
C21 |
H9 |
H8 |
120.0 |
119.9 |
C02 |
C01 |
H10 |
C06 |
239.3 |
238.7 |
C02 |
C01 |
H10 |
H11 |
119.6 |
119.4 |
H10 |
C01 |
C06 |
C05 |
219.0 |
222.0 |
C06 |
C01 |
H10 |
H11 |
240.3 |
240.7 |
C02 |
C01 |
H11 |
C06 |
120.7 |
121.3 |
C02 |
C01 |
H11 |
H10 |
240.4 |
240.6 |
H11 |
C01 |
C06 |
C05 |
99.2 |
102.7 |
C06 |
C01 |
H11 |
H10 |
119.7 |
119.3 |
H12 |
C02 |
C03 |
C04 |
50.9 |
171.0 |
C03 |
C02 |
H12 |
H13 |
119.8 |
239.4 |
H12 |
C02 |
C03 |
H14 |
171.1 |
290.8 |
H12 |
C02 |
C03 |
H15 |
290.6 |
51.4 |
H12 |
C02 |
C01 |
C06 |
293.7 |
170.4 |
H12 |
C02 |
C01 |
H10 |
53.9 |
290.7 |
H12 |
C02 |
C01 |
H11 |
173.6 |
50.1 |
H13 |
C02 |
C03 |
C04 |
170.7 |
50.4 |
C03 |
C02 |
H13 |
H12 |
240.2 |
120.6 |
H13 |
C02 |
C03 |
H14 |
291.0 |
170.1 |
H13 |
C02 |
C03 |
H15 |
50.5 |
290.7 |
H13 |
C02 |
C01 |
C06 |
173.8 |
291.0 |
H13 |
C02 |
C01 |
H10 |
294.0 |
51.3 |
H13 |
C02 |
C01 |
H11 |
53.7 |
170.7 |
C02 |
C03 |
H14 |
C04 |
238.5 |
241.2 |
H14 |
C03 |
C02 |
H12 |
171.1 |
290.8 |
H14 |
C03 |
C02 |
H13 |
291.0 |
170.1 |
C02 |
C03 |
H14 |
H15 |
119.2 |
120.6 |
H14 |
C03 |
C04 |
C05 |
285.6 |
291.4 |
C04 |
C03 |
H14 |
H15 |
240.7 |
239.4 |
H14 |
C03 |
C04 |
H16 |
45.9 |
51.6 |
H14 |
C03 |
C04 |
H17 |
165.3 |
171.0 |
C02 |
C03 |
H15 |
C04 |
121.5 |
118.8 |
H15 |
C03 |
C02 |
H12 |
290.6 |
51.4 |
H15 |
C03 |
C02 |
H13 |
50.5 |
290.7 |
C02 |
C03 |
H15 |
H14 |
240.8 |
239.4 |
H15 |
C03 |
C04 |
C05 |
166.1 |
170.8 |
C04 |
C03 |
H15 |
H14 |
119.3 |
120.6 |
H15 |
C03 |
C04 |
H16 |
286.4 |
291.0 |
H15 |
C03 |
C04 |
H17 |
45.7 |
50.4 |
C03 |
C04 |
H16 |
C05 |
237.9 |
238.8 |
H16 |
C04 |
C03 |
H14 |
45.9 |
51.6 |
H16 |
C04 |
C03 |
H15 |
286.4 |
291.0 |
C03 |
C04 |
H16 |
H17 |
119.0 |
119.4 |
H16 |
C04 |
C05 |
N07 |
47.5 |
41.9 |
C05 |
C04 |
H16 |
H17 |
241.0 |
240.6 |
C03 |
C04 |
H17 |
C05 |
122.1 |
121.2 |
H17 |
C04 |
C03 |
H14 |
165.3 |
171.0 |
H17 |
C04 |
C03 |
H15 |
45.7 |
50.4 |
C03 |
C04 |
H17 |
H16 |
241.0 |
240.6 |
H17 |
C04 |
C05 |
N07 |
288.2 |
282.5 |
C05 |
C04 |
H17 |
H16 |
119.0 |
119.3 |
H19 |
C14 |
C15 |
C16 |
15.0 |
359.9 |
C13 |
C14 |
H19 |
C15 |
180.0 |
179.9 |
H19 |
C14 |
C15 |
H5 |
194.9 |
180.0 |
H19 |
C14 |
C13 |
H3 |
12.6 |
185.0 |
H19 |
C14 |
C13 |
H4 |
253.4 |
65.0 |
O17 |
C18 |
H21 |
H22 |
119.8 |
240.1 |
H21 |
C18 |
C19 |
N20 |
86.3 |
300.0 |
C19 |
C18 |
H21 |
H22 |
240.2 |
120.0 |
O17 |
C18 |
H22 |
H21 |
240.2 |
120.0 |
H22 |
C18 |
C19 |
N20 |
326.4 |
60.1 |
C19 |
C18 |
H22 |
H21 |
119.8 |
240.0 |
C21 |
N20 |
H23 |
C19 |
180.0 |
180.0 |
H23 |
N20 |
C21 |
H7 |
360.0 |
120.0 |
H23 |
N20 |
C21 |
H8 |
120.0 |
240.0 |
H23 |
N20 |
C21 |
H9 |
240.0 |
0.0 |
C05 |
N07 |
H6 |
C08 |
180.0 |
180.2 |
H6 |
N07 |
C08 |
O22 |
359.6 |
0.3 |