Atom Nomenclature for L6E

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L6E

Atom Name (V3) Atom Name (V2)
C10 C1
N12 N1
C13 C2
C15 C3
C21 C4
C01 C5
C02 C6
C03 C7
C04 C8
C05 C9
C06 C10
C08 C11
C09 C12
C11 C13
C14 C14
C16 C15
C18 C16
C19 C17
N07 N2
N20 N3
O17 O1
O22 O2
O23 O3
O24 O4
O25 O5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H19 H19
H21 H21
H22 H22
H23 H23
H6 H6