Atom Nomenclature for L66

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L66

Atom Name (V3) Atom Name (V2)
O2 O2
C17 C17
N4 N4
C16 C16
O3 O3
N5 N5
C18 C18
C2 C2
C3 C3
N1 N1
C1 C1
N2 N2
C4 C4
N3 N3
C5 C5
C10 C10
C11 C11
C40 C40
C12 C12
C13 C13
C15 C15
C14 C14
O41 O41
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
O38 O38
C39 C39
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19