PDB Chemical Component L47
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L47
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.449 |
1.378 |
C1 |
C6 |
1.457 |
1.384 |
C1 |
H1 |
1.103 |
1.080 |
C2 |
C3 |
1.448 |
1.397 |
C2 |
H2 |
1.103 |
1.081 |
C3 |
C4 |
1.461 |
1.398 |
C3 |
C11 |
1.482 |
1.474 |
C4 |
C5 |
1.441 |
1.381 |
C4 |
CL35 |
1.712 |
1.736 |
C5 |
C6 |
1.436 |
1.383 |
C5 |
H5 |
1.103 |
1.080 |
C6 |
H6 |
1.103 |
1.080 |
C11 |
N12 |
1.351 |
1.288 |
C11 |
C15 |
1.507 |
1.512 |
N12 |
N13 |
1.286 |
1.394 |
N13 |
C14 |
1.476 |
1.471 |
N13 |
C20 |
1.347 |
1.348 |
C14 |
C15 |
1.468 |
1.541 |
C14 |
C18 |
1.469 |
1.507 |
C14 |
H14 |
1.116 |
1.090 |
C15 |
H151 |
1.115 |
1.090 |
C15 |
H152 |
1.115 |
1.091 |
C18 |
C26 |
1.446 |
1.384 |
C18 |
C30 |
1.450 |
1.381 |
C20 |
C21 |
1.525 |
1.507 |
C20 |
O25 |
1.231 |
1.214 |
C21 |
H211 |
1.115 |
1.091 |
C21 |
H212 |
1.116 |
1.090 |
C21 |
H213 |
1.115 |
1.089 |
C26 |
C27 |
1.443 |
1.382 |
C26 |
H26 |
1.102 |
1.080 |
C27 |
C28 |
1.443 |
1.381 |
C27 |
H27 |
1.102 |
1.080 |
C28 |
C29 |
1.447 |
1.387 |
C28 |
H28 |
1.102 |
1.080 |
C29 |
C30 |
1.443 |
1.387 |
C29 |
O36 |
1.377 |
1.359 |
C30 |
H30 |
1.103 |
1.081 |
O36 |
H36 |
0.951 |
0.967 |
Bond Angles for L47
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
121.6 |
120.2 |
C2 |
C1 |
H1 |
118.9 |
119.9 |
C1 |
C2 |
C3 |
117.4 |
119.9 |
C1 |
C2 |
H2 |
121.3 |
120.1 |
C6 |
C1 |
H1 |
119.5 |
119.9 |
C1 |
C6 |
C5 |
121.8 |
120.3 |
C1 |
C6 |
H6 |
119.9 |
119.8 |
C3 |
C2 |
H2 |
121.3 |
120.0 |
C2 |
C3 |
C4 |
119.7 |
119.7 |
C2 |
C3 |
C11 |
119.5 |
120.2 |
C4 |
C3 |
C11 |
120.8 |
120.2 |
C3 |
C4 |
C5 |
123.4 |
119.8 |
C3 |
C4 |
CL35 |
116.3 |
120.1 |
C3 |
C11 |
N12 |
128.0 |
125.3 |
C3 |
C11 |
C15 |
131.9 |
125.3 |
C5 |
C4 |
CL35 |
120.1 |
120.1 |
C4 |
C5 |
C6 |
116.1 |
120.2 |
C4 |
C5 |
H5 |
122.1 |
119.9 |
C6 |
C5 |
H5 |
121.8 |
119.9 |
C5 |
C6 |
H6 |
118.4 |
119.9 |
N12 |
C11 |
C15 |
99.6 |
109.5 |
C11 |
N12 |
N13 |
114.5 |
114.1 |
C11 |
C15 |
C14 |
111.4 |
104.0 |
C11 |
C15 |
H151 |
111.5 |
110.5 |
C11 |
C15 |
H152 |
111.5 |
110.5 |
N12 |
N13 |
C14 |
114.3 |
108.9 |
N12 |
N13 |
C20 |
119.8 |
125.5 |
C14 |
N13 |
C20 |
125.9 |
125.6 |
N13 |
C14 |
C15 |
95.1 |
103.6 |
N13 |
C14 |
C18 |
131.3 |
111.0 |
N13 |
C14 |
H14 |
117.0 |
110.3 |
N13 |
C20 |
C21 |
115.4 |
120.0 |
N13 |
C20 |
O25 |
122.6 |
120.0 |
C15 |
C14 |
C18 |
126.7 |
110.6 |
C15 |
C14 |
H14 |
124.4 |
110.6 |
C14 |
C15 |
H151 |
111.5 |
110.7 |
C14 |
C15 |
H152 |
111.5 |
110.4 |
C18 |
C14 |
H14 |
62.3 |
110.5 |
C14 |
C18 |
C26 |
116.5 |
120.0 |
C14 |
C18 |
C30 |
121.8 |
120.0 |
H151 |
C15 |
H152 |
98.8 |
110.6 |
C26 |
C18 |
C30 |
121.6 |
120.0 |
C18 |
C26 |
C27 |
121.6 |
120.1 |
C18 |
C26 |
H26 |
119.3 |
119.9 |
C18 |
C30 |
C29 |
116.5 |
120.0 |
C18 |
C30 |
H30 |
122.0 |
120.0 |
C21 |
C20 |
O25 |
121.8 |
120.0 |
C20 |
C21 |
H211 |
115.4 |
109.4 |
C20 |
C21 |
H212 |
110.1 |
109.5 |
C20 |
C21 |
H213 |
110.1 |
109.5 |
H211 |
C21 |
H212 |
110.0 |
109.5 |
H211 |
C21 |
H213 |
110.1 |
109.5 |
H212 |
C21 |
H213 |
100.1 |
109.5 |
C27 |
C26 |
H26 |
119.1 |
120.0 |
C26 |
C27 |
C28 |
116.9 |
120.1 |
C26 |
C27 |
H27 |
121.5 |
120.0 |
C28 |
C27 |
H27 |
121.6 |
120.0 |
C27 |
C28 |
C29 |
121.4 |
119.9 |
C27 |
C28 |
H28 |
119.2 |
120.0 |
C29 |
C28 |
H28 |
119.4 |
120.0 |
C28 |
C29 |
C30 |
121.9 |
119.9 |
C28 |
C29 |
O36 |
118.2 |
120.1 |
C30 |
C29 |
O36 |
119.8 |
120.1 |
C29 |
C30 |
H30 |
121.6 |
120.0 |
C29 |
O36 |
H36 |
118.2 |
106.8 |
Torsion Angles for L47
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
H1 |
180.1 |
180.0 |
C2 |
C1 |
C6 |
C5 |
0.2 |
360.0 |
C2 |
C1 |
C6 |
H6 |
180.2 |
180.0 |
C3 |
C2 |
C1 |
H2 |
179.9 |
179.9 |
C1 |
C2 |
C3 |
C4 |
358.7 |
0.3 |
C1 |
C2 |
C3 |
C11 |
178.7 |
180.0 |
C2 |
C1 |
C6 |
H1 |
179.9 |
180.0 |
C6 |
C1 |
C2 |
C3 |
0.2 |
0.0 |
C6 |
C1 |
C2 |
H2 |
180.2 |
180.1 |
C4 |
C5 |
C6 |
C1 |
0.5 |
359.7 |
C1 |
C6 |
C5 |
H5 |
180.5 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
H1 |
C6 |
180.1 |
180.0 |
H1 |
C1 |
C2 |
C3 |
180.1 |
180.0 |
H1 |
C1 |
C2 |
H2 |
0.1 |
0.1 |
H1 |
C1 |
C6 |
C5 |
180.3 |
180.0 |
H1 |
C1 |
C6 |
H6 |
0.3 |
0.0 |
C3 |
C2 |
C1 |
C6 |
0.2 |
0.0 |
C3 |
C2 |
C1 |
H1 |
180.1 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.1 |
180.1 |
C4 |
C3 |
C2 |
C11 |
180.1 |
180.3 |
C2 |
C3 |
C4 |
C5 |
2.1 |
359.4 |
C2 |
C3 |
C4 |
CL35 |
186.8 |
180.0 |
C2 |
C3 |
C11 |
N12 |
345.4 |
180.0 |
C2 |
C3 |
C11 |
C15 |
155.7 |
360.0 |
H2 |
C2 |
C1 |
C6 |
180.2 |
180.1 |
H2 |
C2 |
C1 |
H1 |
0.1 |
0.1 |
C1 |
C2 |
H2 |
C3 |
179.9 |
179.9 |
H2 |
C2 |
C3 |
C4 |
178.7 |
180.2 |
H2 |
C2 |
C3 |
C11 |
358.6 |
359.9 |
C4 |
C3 |
C2 |
H2 |
178.7 |
180.2 |
C2 |
C3 |
C4 |
C11 |
179.9 |
179.7 |
C4 |
C3 |
C11 |
N12 |
165.3 |
359.7 |
C4 |
C3 |
C11 |
C15 |
335.7 |
179.7 |
C5 |
C4 |
C3 |
CL35 |
175.3 |
179.4 |
C3 |
C4 |
C5 |
C6 |
358.3 |
0.6 |
C3 |
C4 |
C5 |
H5 |
178.4 |
180.3 |
C11 |
C3 |
C2 |
H2 |
358.6 |
359.9 |
C2 |
C3 |
C11 |
C4 |
180.1 |
180.3 |
C11 |
C3 |
C4 |
C5 |
182.2 |
179.7 |
C11 |
C3 |
C4 |
CL35 |
6.9 |
0.3 |
N12 |
C11 |
C3 |
C15 |
189.6 |
180.0 |
C3 |
C11 |
N12 |
N13 |
183.2 |
180.0 |
C3 |
C11 |
C15 |
C14 |
166.4 |
179.8 |
C3 |
C11 |
C15 |
H151 |
291.7 |
298.7 |
C3 |
C11 |
C15 |
H152 |
41.1 |
61.4 |
C1 |
C6 |
C5 |
C4 |
0.5 |
359.7 |
C5 |
C4 |
C3 |
C11 |
182.2 |
179.7 |
C3 |
C4 |
C5 |
CL35 |
184.9 |
180.6 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.3 |
C4 |
C5 |
C6 |
H6 |
180.5 |
179.7 |
CL35 |
C4 |
C3 |
C11 |
6.9 |
0.3 |
C3 |
C4 |
CL35 |
C5 |
175.4 |
179.4 |
CL35 |
C4 |
C5 |
C6 |
173.4 |
180.0 |
CL35 |
C4 |
C5 |
H5 |
353.5 |
359.8 |
C5 |
C6 |
C1 |
H1 |
180.3 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
CL35 |
173.4 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.7 |
H5 |
C5 |
C4 |
CL35 |
353.5 |
359.8 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.3 |
H5 |
C5 |
C6 |
H6 |
0.5 |
360.0 |
H6 |
C6 |
C1 |
H1 |
0.3 |
0.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
0.5 |
360.0 |
C3 |
C11 |
N12 |
C15 |
172.7 |
180.0 |
N12 |
C11 |
C15 |
C14 |
338.7 |
359.8 |
N12 |
C11 |
C15 |
H151 |
104.0 |
118.6 |
N12 |
C11 |
C15 |
H152 |
213.4 |
241.4 |
C11 |
N12 |
N13 |
C14 |
3.6 |
0.2 |
C11 |
N12 |
N13 |
C20 |
183.6 |
180.0 |
C3 |
C11 |
C15 |
N12 |
187.7 |
180.0 |
C15 |
C11 |
N12 |
N13 |
10.5 |
0.0 |
N13 |
C14 |
C15 |
C11 |
21.8 |
0.3 |
C11 |
C15 |
C14 |
C18 |
228.6 |
241.3 |
C11 |
C15 |
C14 |
H14 |
149.6 |
118.5 |
C14 |
C15 |
C11 |
H151 |
234.7 |
241.2 |
C14 |
C15 |
C11 |
H152 |
125.3 |
118.4 |
H151 |
C15 |
C11 |
H152 |
250.6 |
237.3 |
N13 |
N12 |
C11 |
C15 |
10.5 |
0.0 |
C14 |
N13 |
N12 |
C20 |
180.0 |
180.3 |
N12 |
N13 |
C14 |
C15 |
344.2 |
359.7 |
N12 |
N13 |
C14 |
C18 |
135.5 |
118.4 |
N12 |
N13 |
C14 |
H14 |
211.2 |
241.3 |
N12 |
N13 |
C20 |
C21 |
144.4 |
0.1 |
N12 |
N13 |
C20 |
O25 |
330.2 |
180.0 |
C11 |
C15 |
C14 |
N13 |
21.8 |
0.3 |
N12 |
N13 |
C14 |
C20 |
180.0 |
179.7 |
C14 |
N13 |
C20 |
C21 |
324.4 |
179.8 |
C14 |
N13 |
C20 |
O25 |
150.2 |
359.7 |
C15 |
C14 |
N13 |
C18 |
208.7 |
241.3 |
C15 |
C14 |
N13 |
H14 |
133.0 |
118.4 |
N13 |
C14 |
C15 |
H151 |
256.6 |
241.6 |
N13 |
C14 |
C15 |
H152 |
147.1 |
118.8 |
C18 |
C14 |
N13 |
H14 |
284.3 |
237.1 |
N13 |
C14 |
C18 |
C26 |
283.4 |
325.6 |
N13 |
C14 |
C18 |
C30 |
102.3 |
145.4 |
N12 |
N13 |
C20 |
C14 |
180.0 |
180.3 |
C20 |
N13 |
C14 |
C15 |
164.2 |
179.9 |
C20 |
N13 |
C14 |
C18 |
315.5 |
298.6 |
C20 |
N13 |
C14 |
H14 |
31.2 |
61.5 |
C21 |
C20 |
N13 |
O25 |
174.2 |
180.1 |
N13 |
C20 |
C21 |
H211 |
180.0 |
270.0 |
N13 |
C20 |
C21 |
H212 |
305.3 |
30.0 |
N13 |
C20 |
C21 |
H213 |
54.7 |
150.0 |
C11 |
C15 |
C14 |
H151 |
125.3 |
118.7 |
C11 |
C15 |
C14 |
H152 |
234.7 |
241.5 |
C15 |
C14 |
N13 |
C20 |
164.2 |
179.9 |
N13 |
C14 |
C15 |
C18 |
153.2 |
119.0 |
N13 |
C14 |
C15 |
H14 |
232.2 |
241.8 |
C18 |
C14 |
C15 |
H14 |
78.9 |
122.8 |
C15 |
C14 |
C18 |
C26 |
66.8 |
80.0 |
C15 |
C14 |
C18 |
C30 |
245.6 |
259.7 |
H151 |
C15 |
C14 |
H152 |
109.4 |
122.8 |
C18 |
C14 |
N13 |
C20 |
315.5 |
298.6 |
N13 |
C14 |
C18 |
C15 |
216.6 |
245.6 |
N13 |
C14 |
C18 |
H14 |
102.8 |
122.8 |
C15 |
C14 |
C18 |
H14 |
246.1 |
237.1 |
C18 |
C14 |
C15 |
H151 |
103.3 |
122.6 |
C18 |
C14 |
C15 |
H152 |
353.9 |
359.9 |
C26 |
C18 |
C14 |
C30 |
181.1 |
180.2 |
C14 |
C18 |
C26 |
C27 |
176.8 |
180.0 |
C14 |
C18 |
C26 |
H26 |
356.7 |
360.0 |
C14 |
C18 |
C30 |
C29 |
182.5 |
179.8 |
C14 |
C18 |
C30 |
H30 |
2.5 |
0.2 |
H14 |
C14 |
N13 |
C20 |
31.2 |
61.5 |
N13 |
C14 |
H14 |
C15 |
118.0 |
114.0 |
N13 |
C14 |
H14 |
C18 |
235.3 |
236.9 |
C15 |
C14 |
H14 |
C18 |
117.3 |
122.9 |
H14 |
C14 |
C15 |
H151 |
24.4 |
359.8 |
H14 |
C14 |
C15 |
H152 |
275.0 |
237.1 |
H14 |
C14 |
C18 |
C26 |
180.6 |
202.9 |
H14 |
C14 |
C18 |
C30 |
359.5 |
22.6 |
C11 |
C15 |
H151 |
C14 |
234.8 |
245.3 |
C11 |
C15 |
H151 |
H152 |
117.4 |
122.7 |
H151 |
C15 |
C14 |
C18 |
103.3 |
122.6 |
H151 |
C15 |
C14 |
H14 |
24.4 |
359.8 |
C14 |
C15 |
H151 |
H152 |
242.6 |
237.4 |
C11 |
C15 |
H152 |
C14 |
125.3 |
114.5 |
C11 |
C15 |
H152 |
H151 |
242.6 |
237.3 |
H152 |
C15 |
C14 |
C18 |
353.9 |
359.9 |
H152 |
C15 |
C14 |
H14 |
275.0 |
237.1 |
C14 |
C15 |
H152 |
H151 |
117.4 |
122.8 |
C26 |
C18 |
C14 |
H14 |
180.6 |
202.9 |
C14 |
C18 |
C26 |
C30 |
178.9 |
179.8 |
C26 |
C18 |
C30 |
C29 |
1.3 |
359.5 |
C26 |
C18 |
C30 |
H30 |
181.3 |
179.9 |
C27 |
C26 |
C18 |
H26 |
180.0 |
180.1 |
C18 |
C26 |
C27 |
C28 |
0.9 |
360.0 |
C18 |
C26 |
C27 |
H27 |
180.9 |
180.0 |
C30 |
C18 |
C14 |
H14 |
359.5 |
22.6 |
C14 |
C18 |
C30 |
C26 |
181.2 |
180.2 |
C30 |
C18 |
C26 |
C27 |
357.9 |
0.3 |
C30 |
C18 |
C26 |
H26 |
177.8 |
180.2 |
C28 |
C29 |
C30 |
C18 |
0.6 |
0.4 |
C18 |
C30 |
C29 |
O36 |
181.8 |
180.3 |
C29 |
C30 |
C18 |
H30 |
180.0 |
179.6 |
N13 |
C20 |
C21 |
O25 |
185.7 |
179.9 |
H211 |
C21 |
C20 |
H212 |
234.8 |
240.0 |
H211 |
C21 |
C20 |
H213 |
125.3 |
120.0 |
H212 |
C21 |
C20 |
H213 |
250.6 |
240.0 |
N13 |
C20 |
O25 |
C21 |
173.9 |
180.1 |
O25 |
C20 |
C21 |
H211 |
354.3 |
90.0 |
O25 |
C20 |
C21 |
H212 |
119.5 |
210.0 |
O25 |
C20 |
C21 |
H213 |
229.0 |
330.0 |
H211 |
C21 |
C20 |
O25 |
354.3 |
90.0 |
C20 |
C21 |
H211 |
H212 |
125.3 |
120.0 |
C20 |
C21 |
H211 |
H213 |
234.6 |
240.0 |
H212 |
C21 |
H211 |
H213 |
109.4 |
120.1 |
H212 |
C21 |
C20 |
O25 |
119.5 |
210.0 |
C20 |
C21 |
H212 |
H211 |
231.8 |
240.1 |
C20 |
C21 |
H212 |
H213 |
115.9 |
120.0 |
H211 |
C21 |
H212 |
H213 |
244.2 |
239.9 |
H213 |
C21 |
C20 |
O25 |
229.0 |
330.0 |
C20 |
C21 |
H213 |
H211 |
128.3 |
119.9 |
C20 |
C21 |
H213 |
H212 |
244.1 |
240.0 |
H211 |
C21 |
H213 |
H212 |
115.8 |
120.1 |
C27 |
C26 |
C18 |
C30 |
357.9 |
0.3 |
C18 |
C26 |
C27 |
H26 |
180.0 |
179.9 |
C28 |
C27 |
C26 |
H27 |
180.0 |
180.0 |
C26 |
C27 |
C28 |
C29 |
1.0 |
360.0 |
C26 |
C27 |
C28 |
H28 |
181.0 |
179.9 |
H26 |
C26 |
C18 |
C30 |
177.8 |
180.2 |
C18 |
C26 |
H26 |
C27 |
180.0 |
180.1 |
H26 |
C26 |
C27 |
C28 |
180.9 |
180.1 |
H26 |
C26 |
C27 |
H27 |
1.0 |
0.0 |
C28 |
C27 |
C26 |
H26 |
180.9 |
180.1 |
C26 |
C27 |
C28 |
H27 |
180.0 |
180.0 |
C29 |
C28 |
C27 |
H28 |
180.0 |
180.1 |
C27 |
C28 |
C29 |
C30 |
358.2 |
359.8 |
C27 |
C28 |
C29 |
O36 |
177.0 |
180.0 |
H27 |
C27 |
C26 |
H26 |
1.0 |
0.0 |
C26 |
C27 |
H27 |
C28 |
180.0 |
180.0 |
H27 |
C27 |
C28 |
C29 |
181.0 |
180.0 |
H27 |
C27 |
C28 |
H28 |
1.0 |
359.9 |
C18 |
C30 |
C29 |
C28 |
0.6 |
0.4 |
C29 |
C28 |
C27 |
H27 |
181.0 |
180.0 |
C27 |
C28 |
C29 |
H28 |
180.0 |
179.9 |
C30 |
C29 |
C28 |
O36 |
181.1 |
179.8 |
C28 |
C29 |
C30 |
H30 |
180.6 |
180.1 |
C28 |
C29 |
O36 |
H36 |
180.0 |
90.0 |
H28 |
C28 |
C27 |
H27 |
1.0 |
359.9 |
C27 |
C28 |
H28 |
C29 |
180.0 |
180.1 |
H28 |
C28 |
C29 |
C30 |
178.2 |
179.9 |
H28 |
C28 |
C29 |
O36 |
357.0 |
0.0 |
C18 |
C30 |
C29 |
H30 |
180.0 |
180.4 |
C30 |
C29 |
C28 |
H28 |
178.2 |
179.9 |
C28 |
C29 |
C30 |
O36 |
178.8 |
180.2 |
C30 |
C29 |
O36 |
H36 |
358.9 |
270.2 |
O36 |
C29 |
C28 |
H28 |
357.0 |
0.0 |
C28 |
C29 |
O36 |
C30 |
181.1 |
179.8 |
O36 |
C29 |
C30 |
H30 |
1.8 |
359.9 |
C18 |
C30 |
H30 |
C29 |
180.0 |
179.6 |
H30 |
C30 |
C29 |
O36 |
1.8 |
359.9 |