Atom Nomenclature for L47

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L47

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C11 C11
N12 N12
N13 N13
C14 C14
C15 C15
C18 C18
C20 C20
C21 C21
O25 O25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
CL35 CL35
O36 O36
H1 H1
H2 H2
H5 H5
H6 H6
H14 H14
H151 1H15
H152 2H15
H211 1H21
H212 2H21
H213 3H21
H26 H26
H27 H27
H28 H28
H30 H30
H36 H36