PDB Chemical Component L40
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L40
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C17 |
C16 |
1.510 |
1.506 |
| C1 |
C2 |
1.523 |
1.530 |
| C15 |
C16 |
1.411 |
1.382 |
| C15 |
C14 |
1.391 |
1.383 |
| C16 |
C11 |
1.416 |
1.389 |
| C2 |
C3 |
1.524 |
1.507 |
| C14 |
C13 |
1.404 |
1.382 |
| C11 |
N10 |
1.377 |
1.399 |
| C11 |
C12 |
1.405 |
1.388 |
| N10 |
C8 |
1.326 |
1.348 |
| C29 |
C27 |
1.488 |
1.507 |
| O28 |
C27 |
1.211 |
1.213 |
| C27 |
C4 |
1.479 |
1.466 |
| C3 |
C4 |
1.392 |
1.415 |
| C3 |
C7 |
1.490 |
1.363 |
| C4 |
C5 |
1.466 |
1.386 |
| C8 |
C7 |
1.495 |
1.468 |
| C8 |
O9 |
1.212 |
1.217 |
| C13 |
C12 |
1.394 |
1.382 |
| C13 |
S18 |
1.602 |
1.762 |
| C7 |
N6 |
1.340 |
1.378 |
| C5 |
N6 |
1.342 |
1.342 |
| C5 |
C26 |
1.499 |
1.507 |
| O19 |
S18 |
1.442 |
1.421 |
| S18 |
N21 |
1.624 |
1.656 |
| S18 |
O20 |
1.434 |
1.421 |
| N21 |
C22 |
1.454 |
1.465 |
| C15 |
H1 |
1.080 |
1.080 |
| C14 |
H2 |
1.080 |
1.080 |
| C12 |
H3 |
1.080 |
1.080 |
| C26 |
H4 |
1.100 |
1.090 |
| C26 |
H5 |
1.100 |
1.090 |
| C26 |
H6 |
1.100 |
1.090 |
| C29 |
H7 |
1.100 |
1.090 |
| C29 |
H8 |
1.101 |
1.090 |
| C29 |
H9 |
1.099 |
1.090 |
| C1 |
H10 |
1.100 |
1.091 |
| C1 |
H11 |
1.100 |
1.090 |
| C1 |
H12 |
1.099 |
1.089 |
| C2 |
H13 |
1.100 |
1.090 |
| C2 |
H14 |
1.100 |
1.090 |
| C22 |
H15 |
1.100 |
1.090 |
| C22 |
H16 |
1.100 |
1.090 |
| C22 |
H17 |
1.100 |
1.090 |
| N6 |
H18 |
1.000 |
0.970 |
| N10 |
H19 |
1.000 |
0.971 |
| N21 |
H20 |
1.001 |
0.970 |
| C17 |
H21 |
1.100 |
1.090 |
| C17 |
H22 |
1.100 |
1.090 |
| C17 |
H23 |
1.099 |
1.090 |
Bond Angles for L40
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H10 |
109.5 |
109.5 |
| C2 |
C1 |
H11 |
109.5 |
109.5 |
| C2 |
C1 |
H12 |
109.5 |
109.5 |
| C1 |
C2 |
H13 |
110.5 |
109.5 |
| C1 |
C2 |
H14 |
110.5 |
109.5 |
| C14 |
C15 |
C16 |
120.8 |
120.0 |
| C15 |
C16 |
C11 |
120.1 |
119.9 |
| C16 |
C15 |
H1 |
119.6 |
119.9 |
| C15 |
C14 |
C13 |
119.5 |
120.2 |
| C14 |
C15 |
H1 |
119.6 |
120.0 |
| C15 |
C14 |
H2 |
120.3 |
119.9 |
| C16 |
C11 |
N10 |
120.2 |
120.1 |
| C14 |
C13 |
C12 |
119.9 |
120.1 |
| C14 |
C13 |
S18 |
119.9 |
120.0 |
| C13 |
C14 |
H2 |
120.2 |
120.0 |
| C11 |
N10 |
C8 |
126.3 |
120.0 |
| C11 |
N10 |
H19 |
116.8 |
120.0 |
| C11 |
C12 |
H3 |
119.1 |
120.1 |
| N10 |
C8 |
O9 |
121.7 |
120.0 |
| C3 |
C4 |
C5 |
109.1 |
107.0 |
| C3 |
C7 |
N6 |
109.1 |
108.4 |
| C4 |
C5 |
N6 |
106.7 |
108.3 |
| C4 |
C5 |
C26 |
129.0 |
125.9 |
| C8 |
C7 |
N6 |
127.0 |
125.8 |
| C13 |
C12 |
H3 |
119.1 |
120.0 |
| C13 |
S18 |
O19 |
107.4 |
106.4 |
| C13 |
S18 |
N21 |
110.8 |
107.2 |
| C13 |
S18 |
O20 |
110.1 |
106.4 |
| C7 |
N6 |
C5 |
111.7 |
109.3 |
| C7 |
N6 |
H18 |
124.2 |
125.4 |
| C26 |
C5 |
N6 |
124.3 |
125.8 |
| C5 |
N6 |
H18 |
124.2 |
125.3 |
| C5 |
C26 |
H4 |
109.5 |
109.5 |
| C5 |
C26 |
H5 |
109.5 |
109.5 |
| C5 |
C26 |
H6 |
109.4 |
109.4 |
| O19 |
S18 |
O20 |
107.9 |
123.1 |
| S18 |
N21 |
H20 |
106.4 |
120.0 |
| N21 |
C22 |
H15 |
109.5 |
109.5 |
| N21 |
C22 |
H16 |
109.5 |
109.4 |
| N21 |
C22 |
H17 |
109.4 |
109.5 |
| H4 |
C26 |
H5 |
109.5 |
109.4 |
| H4 |
C26 |
H6 |
109.5 |
109.5 |
| H5 |
C26 |
H6 |
109.5 |
109.4 |
| H7 |
C29 |
H8 |
109.5 |
109.5 |
| H7 |
C29 |
H9 |
109.4 |
109.4 |
| H8 |
C29 |
H9 |
109.5 |
109.4 |
| H10 |
C1 |
H11 |
109.5 |
109.4 |
| H10 |
C1 |
H12 |
109.5 |
109.5 |
| H11 |
C1 |
H12 |
109.5 |
109.5 |
| H13 |
C2 |
H14 |
109.5 |
109.5 |
| H15 |
C22 |
H16 |
109.5 |
109.4 |
| H15 |
C22 |
H17 |
109.5 |
109.5 |
| H16 |
C22 |
H17 |
109.5 |
109.5 |
| H21 |
C17 |
H22 |
109.5 |
109.4 |
| H21 |
C17 |
H23 |
109.5 |
109.5 |
| H22 |
C17 |
H23 |
109.4 |
109.5 |
Torsion Angles for L40
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C17 |
C16 |
C15 |
H1 |
359.4 |
0.2 |
| H10 |
C1 |
C2 |
H11 |
240.0 |
240.1 |
| H10 |
C1 |
C2 |
H12 |
120.0 |
120.0 |
| H11 |
C1 |
C2 |
H12 |
240.0 |
240.0 |
| H13 |
C2 |
C1 |
H14 |
238.7 |
120.1 |
| C16 |
C15 |
C14 |
C13 |
0.6 |
360.0 |
| C14 |
C15 |
C16 |
H1 |
180.0 |
179.7 |
| C16 |
C15 |
C14 |
H2 |
180.6 |
180.0 |
| C15 |
C16 |
C11 |
N10 |
184.6 |
179.9 |
| C14 |
C15 |
C16 |
C11 |
359.0 |
0.0 |
| C16 |
C15 |
C14 |
H1 |
180.0 |
180.3 |
| C15 |
C14 |
C13 |
C12 |
0.5 |
0.0 |
| C15 |
C14 |
C13 |
S18 |
179.9 |
180.0 |
| C13 |
C14 |
C15 |
H2 |
180.0 |
180.0 |
| C11 |
C16 |
C15 |
H1 |
179.0 |
180.3 |
| C16 |
C11 |
N10 |
C8 |
171.6 |
214.1 |
| C16 |
C11 |
N10 |
H19 |
351.6 |
34.1 |
| C16 |
C11 |
C12 |
H3 |
180.9 |
180.0 |
| C2 |
C3 |
C7 |
N6 |
180.8 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
0.6 |
360.0 |
| C13 |
C14 |
C15 |
H1 |
180.6 |
179.7 |
| C15 |
C14 |
C13 |
H2 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
H3 |
178.7 |
180.0 |
| C14 |
C13 |
S18 |
O19 |
23.0 |
203.6 |
| C14 |
C13 |
S18 |
N21 |
263.6 |
90.0 |
| C14 |
C13 |
S18 |
O20 |
140.3 |
336.5 |
| N10 |
C11 |
C12 |
H3 |
356.5 |
360.0 |
| C11 |
N10 |
C8 |
O9 |
345.9 |
5.6 |
| C15 |
C16 |
C11 |
C12 |
0.2 |
359.9 |
| C14 |
C13 |
C12 |
C11 |
358.7 |
359.9 |
| C13 |
C12 |
C11 |
H3 |
180.0 |
180.1 |
| C11 |
N10 |
C8 |
H19 |
180.0 |
180.1 |
| C27 |
C4 |
C5 |
N6 |
181.9 |
180.3 |
| C27 |
C4 |
C5 |
C26 |
2.2 |
0.4 |
| C3 |
C4 |
C5 |
N6 |
359.0 |
0.0 |
| C3 |
C4 |
C5 |
C26 |
179.2 |
180.0 |
| C7 |
C3 |
C4 |
C5 |
1.7 |
360.0 |
| C8 |
C7 |
C3 |
N6 |
183.0 |
179.9 |
| C3 |
C7 |
N6 |
C5 |
1.4 |
0.0 |
| C3 |
C7 |
N6 |
H18 |
181.4 |
179.9 |
| C7 |
N6 |
C5 |
C4 |
359.7 |
360.0 |
| C26 |
C5 |
C4 |
N6 |
180.2 |
180.0 |
| C4 |
C5 |
N6 |
H18 |
179.7 |
180.1 |
| C4 |
C5 |
C26 |
H4 |
89.8 |
95.0 |
| C4 |
C5 |
C26 |
H5 |
209.9 |
215.0 |
| C4 |
C5 |
C26 |
H6 |
329.8 |
334.9 |
| C11 |
N10 |
C8 |
C7 |
158.6 |
185.7 |
| C3 |
C7 |
C8 |
N6 |
176.4 |
180.1 |
| C8 |
C7 |
N6 |
C5 |
178.3 |
180.1 |
| C8 |
C7 |
N6 |
H18 |
358.2 |
359.9 |
| O9 |
C8 |
C7 |
N6 |
322.2 |
180.0 |
| C14 |
C13 |
C12 |
S18 |
179.4 |
180.0 |
| C12 |
C13 |
C14 |
H2 |
180.6 |
180.0 |
| C11 |
C12 |
C13 |
H3 |
180.0 |
179.9 |
| C14 |
C13 |
S18 |
C12 |
180.6 |
180.0 |
| S18 |
C13 |
C14 |
H2 |
359.9 |
359.9 |
| S18 |
C13 |
C12 |
H3 |
359.3 |
0.1 |
| O19 |
S18 |
C13 |
O20 |
242.7 |
227.1 |
| C13 |
S18 |
N21 |
H20 |
53.3 |
245.1 |
| C4 |
C5 |
N6 |
C7 |
359.7 |
360.0 |
| C26 |
C5 |
N6 |
C7 |
179.5 |
180.0 |
| C5 |
N6 |
C7 |
H18 |
180.0 |
180.1 |
| C4 |
C5 |
N6 |
C26 |
180.2 |
180.0 |
| C7 |
N6 |
C5 |
H18 |
180.0 |
179.9 |
| N6 |
C5 |
C26 |
H4 |
270.1 |
275.0 |
| N6 |
C5 |
C26 |
H5 |
30.1 |
35.0 |
| N6 |
C5 |
C26 |
H6 |
150.1 |
155.0 |
| C4 |
C5 |
C26 |
N6 |
179.7 |
180.0 |
| C7 |
N6 |
C5 |
C26 |
179.5 |
180.0 |
| C26 |
C5 |
N6 |
H18 |
359.5 |
0.1 |
| H4 |
C26 |
C5 |
H5 |
240.0 |
240.0 |
| H4 |
C26 |
C5 |
H6 |
120.0 |
120.0 |
| H5 |
C26 |
C5 |
H6 |
240.0 |
240.0 |
| C13 |
S18 |
O19 |
N21 |
239.7 |
245.9 |
| C13 |
S18 |
O19 |
O20 |
118.7 |
123.0 |
| O19 |
S18 |
N21 |
H20 |
295.0 |
131.5 |
| C13 |
S18 |
N21 |
O19 |
118.3 |
113.6 |
| C13 |
S18 |
N21 |
O20 |
237.3 |
246.4 |
| S18 |
N21 |
C22 |
H15 |
180.0 |
300.1 |
| S18 |
N21 |
C22 |
H16 |
300.0 |
60.0 |
| S18 |
N21 |
C22 |
H17 |
60.0 |
180.0 |
| C13 |
S18 |
O20 |
O19 |
243.0 |
237.0 |
| C13 |
S18 |
O20 |
N21 |
123.1 |
114.1 |
| O20 |
S18 |
N21 |
H20 |
176.0 |
358.6 |
| C13 |
S18 |
N21 |
C22 |
291.6 |
64.9 |
| H15 |
C22 |
N21 |
H16 |
240.0 |
240.1 |
| H15 |
C22 |
N21 |
H17 |
120.0 |
120.1 |
| H16 |
C22 |
N21 |
H17 |
240.0 |
240.0 |
| C14 |
C15 |
H1 |
C16 |
180.0 |
180.3 |
| H1 |
C15 |
C16 |
C11 |
179.0 |
180.3 |
| H1 |
C15 |
C14 |
C13 |
180.6 |
179.7 |
| H1 |
C15 |
C14 |
H2 |
0.6 |
359.8 |
| H2 |
C14 |
C15 |
C16 |
180.6 |
180.0 |
| C15 |
C14 |
H2 |
C13 |
180.0 |
180.0 |
| H2 |
C14 |
C15 |
H1 |
0.6 |
359.8 |
| H2 |
C14 |
C13 |
C12 |
180.6 |
180.0 |
| H2 |
C14 |
C13 |
S18 |
359.9 |
359.9 |
| H4 |
C26 |
C5 |
N6 |
270.1 |
275.0 |
| C5 |
C26 |
H4 |
H5 |
120.0 |
120.0 |
| C5 |
C26 |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
C26 |
H4 |
H6 |
120.0 |
120.0 |
| H5 |
C26 |
C5 |
N6 |
30.1 |
35.0 |
| C5 |
C26 |
H5 |
H4 |
240.0 |
240.0 |
| C5 |
C26 |
H5 |
H6 |
120.0 |
120.0 |
| H4 |
C26 |
H5 |
H6 |
240.0 |
240.0 |
| H6 |
C26 |
C5 |
N6 |
150.1 |
155.0 |
| C5 |
C26 |
H6 |
H4 |
120.0 |
120.0 |
| C5 |
C26 |
H6 |
H5 |
240.0 |
240.0 |
| H4 |
C26 |
H6 |
H5 |
120.0 |
120.0 |
| H8 |
C29 |
H7 |
H9 |
120.0 |
119.9 |
| H7 |
C29 |
H8 |
H9 |
240.0 |
240.1 |
| H7 |
C29 |
H9 |
H8 |
120.0 |
119.9 |
| C2 |
C1 |
H10 |
H11 |
120.0 |
120.0 |
| C2 |
C1 |
H10 |
H12 |
240.0 |
239.9 |
| H10 |
C1 |
C2 |
H13 |
299.3 |
60.1 |
| H10 |
C1 |
C2 |
H14 |
60.6 |
300.0 |
| H11 |
C1 |
H10 |
H12 |
120.0 |
120.0 |
| C2 |
C1 |
H11 |
H10 |
240.0 |
240.0 |
| C2 |
C1 |
H11 |
H12 |
120.0 |
120.1 |
| H11 |
C1 |
C2 |
H13 |
59.3 |
180.0 |
| H11 |
C1 |
C2 |
H14 |
180.6 |
59.9 |
| H10 |
C1 |
H11 |
H12 |
240.0 |
240.0 |
| C2 |
C1 |
H12 |
H10 |
120.0 |
120.0 |
| C2 |
C1 |
H12 |
H11 |
240.0 |
240.0 |
| H12 |
C1 |
C2 |
H13 |
179.3 |
300.0 |
| H12 |
C1 |
C2 |
H14 |
300.6 |
180.0 |
| H10 |
C1 |
H12 |
H11 |
120.0 |
119.9 |
| H13 |
C2 |
C1 |
H10 |
299.3 |
60.1 |
| H13 |
C2 |
C1 |
H11 |
59.3 |
180.0 |
| H13 |
C2 |
C1 |
H12 |
179.3 |
300.0 |
| C1 |
C2 |
H13 |
H14 |
121.9 |
239.9 |
| H14 |
C2 |
C1 |
H10 |
60.6 |
300.0 |
| H14 |
C2 |
C1 |
H11 |
180.6 |
59.9 |
| H14 |
C2 |
C1 |
H12 |
300.6 |
180.0 |
| C1 |
C2 |
H14 |
H13 |
238.1 |
120.1 |
| N21 |
C22 |
H15 |
H16 |
120.0 |
119.9 |
| N21 |
C22 |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
C22 |
H15 |
H17 |
120.0 |
120.0 |
| N21 |
C22 |
H16 |
H15 |
240.0 |
240.0 |
| N21 |
C22 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
C22 |
H16 |
H17 |
240.0 |
239.9 |
| N21 |
C22 |
H17 |
H15 |
120.0 |
120.0 |
| N21 |
C22 |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
C22 |
H17 |
H16 |
120.0 |
120.0 |
| C7 |
N6 |
H18 |
C5 |
180.0 |
180.2 |
| C11 |
N10 |
H19 |
C8 |
180.0 |
179.9 |
| H19 |
N10 |
C8 |
O9 |
165.9 |
185.5 |
| H20 |
N21 |
C22 |
H15 |
58.4 |
120.0 |
| H20 |
N21 |
C22 |
H16 |
178.4 |
239.9 |
| H20 |
N21 |
C22 |
H17 |
298.3 |
359.9 |
| H22 |
C17 |
H21 |
H23 |
120.0 |
120.0 |
| H21 |
C17 |
H22 |
H23 |
240.0 |
240.0 |
| H21 |
C17 |
H23 |
H22 |
120.0 |
119.9 |