PDB Chemical Component L2O

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for L2O

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CA	1.459	1.469
N	H	1.000	1.009
N	H2	1.000	1.009
CA	C2	1.464	1.530
CA	C6	1.531	1.531
CA	HA	1.100	1.089
C2	C3	1.494	1.530
C2	H4	1.100	1.090
C2	H5	1.100	1.090
C3	C4	1.534	1.530
C3	C5	1.535	1.530
C3	H6	1.101	1.091
C4	H7	1.100	1.091
C4	H8	1.100	1.090
C4	H9	1.100	1.090
C5	H10	1.100	1.090
C5	H11	1.100	1.089
C5	H12	1.100	1.090
C6	C	1.546	1.507
C6	O1	1.403	1.429
C6	H15	1.100	1.090
O1	H14	0.950	0.968
C	O	1.199	1.208
C	OXT	1.352	1.342
OXT	HXT	0.950	0.967

Bond Angles for L2O

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CA	N	H	109.5	111.0
CA	N	H2	109.4	111.0
N	CA	C2	102.9	109.5
N	CA	C6	110.1	109.5
N	CA	HA	114.6	109.5
H	N	H2	109.5	111.0
C2	CA	C6	113.1	109.5
C2	CA	HA	111.7	109.5
CA	C2	C3	115.9	109.5
CA	C2	H4	107.4	109.4
CA	C2	H5	107.3	109.5
C6	CA	HA	104.7	109.5
CA	C6	C	109.3	109.5
CA	C6	O1	111.1	109.5
CA	C6	H15	109.1	109.5
C3	C2	H4	107.4	109.5
C3	C2	H5	107.4	109.5
C2	C3	C4	109.6	109.5
C2	C3	C5	107.1	109.5
C2	C3	H6	110.8	109.4
H4	C2	H5	111.5	109.5
C4	C3	C5	109.0	109.5
C4	C3	H6	108.9	109.5
C3	C4	H7	109.5	109.5
C3	C4	H8	109.5	109.5
C3	C4	H9	109.5	109.5
C5	C3	H6	111.4	109.5
C3	C5	H10	109.5	109.5
C3	C5	H11	109.5	109.5
C3	C5	H12	109.4	109.5
H7	C4	H8	109.4	109.5
H7	C4	H9	109.5	109.4
H8	C4	H9	109.5	109.5
H10	C5	H11	109.4	109.4
H10	C5	H12	109.4	109.4
H11	C5	H12	109.5	109.5
O1	C6	C	111.2	109.5
C	C6	H15	109.0	109.5
C6	C	O	127.9	120.0
C6	C	OXT	110.7	120.0
O1	C6	H15	107.1	109.5
C6	O1	H14	109.5	114.0
O	C	OXT	121.5	120.0
C	OXT	HXT	109.5	117.0

Torsion Angles for L2O

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H	N	CA	H2	240.0	236.1
C2	CA	N	C6	120.9	120.0
C2	CA	N	HA	238.6	240.0
N	CA	C2	C3	122.6	65.0
N	CA	C2	H4	242.6	185.0
N	CA	C2	H5	2.5	305.0
C6	CA	N	HA	117.7	120.0
N	CA	C6	C	205.2	305.0
N	CA	C6	O1	328.3	65.0
N	CA	C6	H15	86.1	185.0
CA	N	H	H2	120.0	123.9
H	N	CA	C2	180.0	60.0
H	N	CA	C6	59.1	300.0
H	N	CA	HA	301.4	180.0
CA	N	H2	H	240.0	236.1
H2	N	CA	C2	300.0	183.9
H2	N	CA	C6	179.1	63.9
H2	N	CA	HA	61.4	303.9
C2	CA	N	H	180.0	60.0
C2	CA	N	H2	300.0	183.9
N	CA	C2	C6	241.2	240.0
N	CA	C2	HA	123.4	120.0
C6	CA	C2	HA	242.2	240.0
C2	CA	C6	C	90.6	185.0
C2	CA	C6	O1	213.7	305.0
C2	CA	C6	H15	331.6	65.0
C3	C2	CA	H4	240.0	240.0
C3	C2	CA	H5	120.0	120.0
CA	C2	C3	C4	265.3	65.0
CA	C2	C3	C5	23.4	185.0
CA	C2	C3	H6	145.0	305.0
H4	C2	CA	H5	240.0	240.0
C6	CA	N	H	59.1	300.0
C6	CA	N	H2	179.1	63.9
N	CA	C6	C2	114.6	120.0
N	CA	C6	HA	236.4	240.0
C2	CA	C6	HA	121.8	120.0
C6	CA	C2	C3	241.4	185.0
C6	CA	C2	H4	1.4	305.0
C6	CA	C2	H5	121.4	65.0
O1	C6	CA	C	123.1	120.0
C	C6	CA	H15	119.1	120.0
CA	C6	C	O	34.1	115.0
CA	C6	C	OXT	214.9	295.0
O1	C6	CA	H15	242.2	240.0
CA	C6	O1	H14	180.0	300.0
HA	CA	N	H	301.4	180.0
HA	CA	N	H2	61.4	303.9
N	CA	HA	C2	243.5	240.0
N	CA	HA	C6	120.7	120.0
C2	CA	HA	C6	237.2	240.0
HA	CA	C2	C3	359.2	305.0
HA	CA	C2	H4	119.2	65.0
HA	CA	C2	H5	239.2	185.0
HA	CA	C6	C	328.8	65.0
HA	CA	C6	O1	91.9	185.0
HA	CA	C6	H15	209.8	305.0
C3	C2	CA	C6	241.4	185.0
C3	C2	CA	HA	359.2	305.0
CA	C2	C3	H4	120.0	120.0
CA	C2	C3	H5	240.0	240.0
H4	C2	C3	H5	120.0	120.0
C4	C3	C2	C5	241.9	240.0
C4	C3	C2	H6	120.3	120.0
C2	C3	C4	H7	180.0	300.0
C2	C3	C4	H8	300.0	60.0
C2	C3	C4	H9	60.0	180.0
C5	C3	C2	H6	238.4	240.0
C2	C3	C5	H10	180.0	60.0
C2	C3	C5	H11	300.0	180.0
C2	C3	C5	H12	60.0	300.0
H4	C2	CA	C6	1.4	305.0
H4	C2	CA	HA	119.2	65.0
CA	C2	H4	C3	234.7	240.0
CA	C2	H4	H5	117.3	120.0
C3	C2	H4	H5	242.6	240.0
H4	C2	C3	C4	145.3	305.0
H4	C2	C3	C5	263.4	65.0
H4	C2	C3	H6	25.0	185.0
H5	C2	CA	C6	121.4	65.0
H5	C2	CA	HA	239.2	185.0
CA	C2	H5	C3	125.3	120.0
CA	C2	H5	H4	242.7	240.0
C3	C2	H5	H4	117.4	120.0
H5	C2	C3	C4	25.3	185.0
H5	C2	C3	C5	143.4	305.0
H5	C2	C3	H6	265.0	65.0
C4	C3	C2	H4	145.3	305.0
C4	C3	C2	H5	25.3	185.0
C2	C3	C4	C5	116.9	120.0
C2	C3	C4	H6	238.6	240.0
C5	C3	C4	H6	121.7	120.0
C4	C3	C5	H10	298.5	180.0
C4	C3	C5	H11	58.5	300.0
C4	C3	C5	H12	178.5	60.0
H7	C4	C3	H8	240.0	240.0
H7	C4	C3	H9	120.0	120.0
H8	C4	C3	H9	240.0	240.0
C5	C3	C2	H4	263.4	65.0
C5	C3	C2	H5	143.4	305.0
C2	C3	C5	C4	241.5	240.0
C2	C3	C5	H6	121.3	120.0
C4	C3	C5	H6	239.8	240.0
C5	C3	C4	H7	63.1	180.0
C5	C3	C4	H8	183.1	300.0
C5	C3	C4	H9	303.1	60.0
H10	C5	C3	H11	240.0	240.0
H10	C5	C3	H12	120.0	120.0
H11	C5	C3	H12	240.0	240.0
H6	C3	C2	H4	25.0	185.0
H6	C3	C2	H5	265.0	65.0
C2	C3	H6	C4	120.6	120.0
C2	C3	H6	C5	240.9	240.0
C4	C3	H6	C5	120.3	120.0
H6	C3	C4	H7	301.4	60.0
H6	C3	C4	H8	61.4	180.0
H6	C3	C4	H9	181.4	300.0
H6	C3	C5	H10	58.7	300.0
H6	C3	C5	H11	178.7	60.0
H6	C3	C5	H12	298.7	180.0
H7	C4	C3	C5	63.1	180.0
H7	C4	C3	H6	301.4	60.0
C3	C4	H7	H8	120.0	120.0
C3	C4	H7	H9	240.0	240.0
H8	C4	H7	H9	120.0	120.0
H8	C4	C3	C5	183.1	300.0
H8	C4	C3	H6	61.4	180.0
C3	C4	H8	H7	239.9	240.0
C3	C4	H8	H9	120.0	120.0
H7	C4	H8	H9	240.0	240.0
H9	C4	C3	C5	303.1	60.0
H9	C4	C3	H6	181.4	300.0
C3	C4	H9	H7	120.1	120.0
C3	C4	H9	H8	240.0	240.0
H7	C4	H9	H8	119.9	120.0
H10	C5	C3	H6	58.7	300.0
C3	C5	H10	H11	120.0	120.0
C3	C5	H10	H12	240.0	240.0
H11	C5	H10	H12	120.0	120.0
H11	C5	C3	H6	178.7	60.0
C3	C5	H11	H10	240.0	240.0
C3	C5	H11	H12	120.0	120.0
H10	C5	H11	H12	240.0	240.1
H12	C5	C3	H6	298.7	180.0
C3	C5	H12	H10	120.0	120.0
C3	C5	H12	H11	240.0	240.0
H10	C5	H12	H11	120.0	119.9
C	C6	CA	HA	328.8	65.0
CA	C6	C	O1	123.0	120.0
CA	C6	C	H15	240.9	240.0
O1	C6	C	H15	117.9	120.0
C	C6	O1	H14	302.0	60.0
O	C	C6	OXT	179.2	180.0
C6	C	OXT	HXT	179.3	180.0
O1	C6	CA	HA	91.9	185.0
CA	C6	O1	C	238.0	240.0
CA	C6	O1	H15	119.0	120.0
C	C6	O1	H15	241.0	240.0
O1	C6	C	O	271.1	355.0
O1	C6	C	OXT	91.9	175.0
H15	C6	CA	HA	209.8	305.0
CA	C6	H15	C	119.2	120.0
CA	C6	H15	O1	239.7	240.0
O1	C6	H15	C	239.6	240.0
H15	C6	C	O	153.2	235.0
H15	C6	C	OXT	334.0	55.0
H15	C6	O1	H14	61.0	180.0
H14	O1	C6	C	302.0	60.0
H14	O1	C6	H15	61.0	180.0
O	C	C6	H15	153.2	235.0
C6	C	O	OXT	180.9	180.0
O	C	OXT	HXT	0.0	360.0
OXT	C	C6	H15	334.0	55.0
C6	C	OXT	O	179.3	180.0