PDB Chemical Component L2H

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for L2H

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N10 C20 1.514 1.470
O5 C21 1.215 1.216
C23 O6 1.357 1.344
C23 C22 1.357 1.362
C20 C19 1.541 1.530
C21 C22 1.464 1.476
C21 N5 1.334 1.366
O6 C24 1.375 1.344
C22 N6 1.391 1.359
C19 C18 1.550 1.530
O4 C15 1.377 1.341
O4 C14 1.357 1.346
C16 C15 1.503 1.507
C16 N5 1.467 1.481
C16 C17 1.556 1.530
C15 N4 1.350 1.301
C24 N6 1.350 1.310
C24 C25 1.446 1.478
C14 C13 1.359 1.358
N4 C13 1.374 1.359
C27 C26 1.505 1.507
C13 C12 1.438 1.478
C18 C17 1.542 1.530
C25 C26 1.368 1.358
C25 N7 1.386 1.358
C26 O7 1.360 1.347
C12 O3 1.375 1.344
C12 N3 1.353 1.311
N7 C28 1.351 1.311
O3 C11 1.359 1.347
O7 C28 1.385 1.344
N3 C10 1.384 1.359
C28 C29 1.448 1.478
C11 C10 1.357 1.359
C10 C9 1.436 1.477
C29 N8 1.388 1.359
C29 C30 1.369 1.358
C9 N2 1.345 1.310
C9 O2 1.373 1.345
C31 C30 1.504 1.507
N8 C32 1.352 1.300
N2 C7 1.390 1.359
C30 O8 1.355 1.347
O2 C8 1.358 1.345
C7 C8 1.362 1.362
C7 C6 1.467 1.476
C32 O8 1.375 1.340
C32 C5 1.511 1.508
N1 C6 1.341 1.367
N1 C5 1.465 1.481
C6 O1 1.216 1.216
C5 C4 1.558 1.530
C4 C3 1.548 1.529
C2 C3 1.553 1.531
C2 C1 1.531 1.530
N9 C1 1.503 1.469
C1 HB2 1.100 1.090
C1 HB1 1.100 1.091
C2 HC2 1.100 1.090
C2 HC1 1.100 1.091
C5 HF 1.100 1.090
C3 HD2 1.100 1.090
C3 HD1 1.100 1.091
C20 HB2' 1.101 1.089
C20 HB1' 1.100 1.090
C19 HC2' 1.100 1.090
C19 HC1' 1.100 1.090
C18 HD1' 1.100 1.090
C18 HD2' 1.100 1.090
C23 HL 1.080 1.079
C4 HE1 1.100 1.090
C4 HE2 1.099 1.090
C8 HH 1.080 1.079
C17 HE1' 1.100 1.090
C17 HE2' 1.100 1.090
C31 HN3 1.100 1.090
C31 HN2 1.100 1.090
C31 HN1 1.100 1.090
C11 HI 1.080 1.081
C27 HM1 1.100 1.091
C27 HM3 1.100 1.090
C27 HM2 1.100 1.090
C16 HF' 1.100 1.090
C14 HJ 1.081 1.080
N9 HA1 1.000 1.009
N9 HA2 1.000 1.009
N10 HA3' 1.000 1.009
N10 HA2' 1.000 1.009
N5 HK 0.999 0.970
N1 HG 1.000 0.970

Bond Angles for L2H

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N10 C20 HB2' 108.4 109.5
N10 C20 HB1' 108.4 109.4
O6 C23 HL 123.1 126.4
C23 C22 N6 107.0 107.3
C20 C19 C18 110.7 109.5
C19 C20 HB2' 108.4 109.4
C19 C20 HB1' 108.4 109.5
C20 C19 HC2' 109.2 109.5
C20 C19 HC1' 109.2 109.5
C21 C22 N6 133.6 126.2
C21 N5 C16 126.6 115.7
C21 N5 HK 116.7 122.1
C24 N6 C22 102.8 108.4
C19 C18 C17 113.0 109.5
C18 C19 HC2' 109.2 109.5
C18 C19 HC1' 109.2 109.5
C19 C18 HD1' 108.6 109.5
C19 C18 HD2' 108.6 109.5
O4 C14 HJ 124.5 126.5
C15 C16 N5 108.3 108.5
C16 C15 N4 122.7 125.3
C15 C16 HF' 109.4 109.6
N5 C16 HF' 109.9 110.4
C16 N5 HK 116.7 122.1
C16 C17 HE1' 108.7 109.5
C16 C17 HE2' 108.7 109.5
C24 C25 C26 125.0 126.6
C24 C25 N7 124.9 126.1
C27 C26 O7 120.3 126.4
C13 C12 O3 121.9 125.8
C13 C12 N3 120.7 125.2
C17 C18 HD1' 108.6 109.5
C17 C18 HD2' 108.6 109.5
C18 C17 HE1' 108.7 109.5
C18 C17 HE2' 108.7 109.5
C26 C25 N7 110.0 107.3
C25 C26 O7 111.3 107.1
N3 C12 O3 117.4 108.9
O3 C11 HI 123.8 126.4
C28 C29 N8 129.1 126.0
C28 C29 C30 123.5 126.7
C10 C9 N2 120.0 125.1
C10 C9 O2 121.9 125.9
C30 C29 N8 107.4 107.2
C29 C30 O8 112.6 106.9
N2 C9 O2 117.9 109.0
C31 C30 O8 119.0 126.5
N8 C32 O8 115.5 109.2
C32 O8 C30 101.1 108.1
O2 C8 HH 123.8 126.4
C7 C8 HH 123.8 126.5
C7 C6 O1 127.3 120.6
C5 C32 O8 118.2 125.6
C32 C5 C4 109.0 109.6
C32 C5 HF 109.0 109.6
N1 C6 O1 123.2 120.7
N1 C5 HF 109.7 109.7
C5 C4 C3 115.7 109.5
C4 C5 HF 108.4 109.7
C5 C4 HE1 107.9 109.4
C5 C4 HE2 107.9 109.5
C4 C3 HD2 108.8 109.5
C4 C3 HD1 108.8 109.5
C3 C2 HC2 108.7 109.5
C3 C2 HC1 108.7 109.4
C2 C3 HD2 108.8 109.5
C2 C3 HD1 108.8 109.4
C2 C1 HB2 109.0 109.5
C2 C1 HB1 109.0 109.5
N9 C1 HB2 109.0 109.5
N9 C1 HB1 109.0 109.4
HB2 C1 HB1 109.5 109.5
HC2 C2 HC1 109.5 109.5
HD2 C3 HD1 109.5 109.5
HB2' C20 HB1' 109.5 109.5
HC2' C19 HC1' 109.5 109.5
HD1' C18 HD2' 109.5 109.4
HE1 C4 HE2 109.5 109.4
HE1' C17 HE2' 109.5 109.5
HN3 C31 HN2 109.5 109.5
HN3 C31 HN1 109.5 109.4
HN2 C31 HN1 109.5 109.4
HM1 C27 HM3 109.5 109.4
HM1 C27 HM2 109.4 109.5
HM3 C27 HM2 109.5 109.5
HA1 N9 HA2 109.5 111.0
HA3' N10 HA2' 109.5 111.0

Torsion Angles for L2H

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C19 C20 N10 HB2' 239.3 120.0
C19 C20 N10 HB1' 120.6 240.1
N10 C20 C19 HC2' 329.0 300.0
N10 C20 C19 HC1' 88.6 60.0
HB2' C20 N10 HB1' 241.3 120.1
O5 C21 N5 HK 168.8 180.8
O6 C23 C22 N6 4.0 0.1
C21 C22 C23 N6 180.6 180.1
C24 N6 C22 C23 356.4 359.9
N10 C20 C19 HB2' 120.6 240.0
N10 C20 C19 HB1' 239.4 119.9
C20 C19 C18 C17 172.3 180.0
C18 C19 C20 HC2' 239.8 240.0
C18 C19 C20 HC1' 120.2 120.0
C20 C19 C18 HD1' 292.8 300.0
C20 C19 C18 HD2' 51.8 60.0
HB2' C20 C19 HB1' 118.7 240.0
HC2' C19 C20 HC1' 240.4 240.0
C23 C22 C21 N6 179.2 179.9
C24 N6 C22 C21 175.7 179.8
N5 C21 C22 N6 356.1 0.2
C15 C16 N5 C21 215.9 184.9
C21 N5 C16 HF' 335.4 305.1
C16 N5 C21 HK 180.0 180.0
C18 C19 C20 HB2' 88.2 300.0
C18 C19 C20 HB1' 329.5 60.1
C20 C19 C18 HC2' 120.2 120.0
C20 C19 C18 HC1' 239.8 240.0
C17 C18 C19 HD1' 239.5 240.0
C17 C18 C19 HD2' 120.6 120.0
C19 C18 C17 HE1' 164.8 305.1
C19 C18 C17 HE2' 45.7 65.1
HC2' C19 C18 HC1' 119.6 120.0
HD1' C18 C19 HD2' 241.1 240.0
C15 O4 C14 HJ 183.9 179.8
O4 C15 C16 HF' 56.7 54.4
C21 N5 C16 C15 215.9 184.9
N5 C16 C15 HF' 119.8 120.7
C15 C16 N5 HK 35.9 4.9
C15 C16 C17 HE1' 264.3 179.7
C15 C16 C17 HE2' 23.4 59.7
C21 N5 C16 HK 180.0 180.0
N5 C16 C15 N4 345.2 356.3
C15 C16 N5 HF' 240.6 239.8
N5 C16 C17 HE1' 23.7 298.2
N5 C16 C17 HE2' 142.8 178.2
C21 N5 C16 C17 96.9 65.7
C16 C17 C18 HD1' 164.8 65.1
C16 C17 C18 HD2' 45.8 305.1
C18 C17 C16 HE1' 239.6 120.0
C18 C17 C16 HE2' 120.4 240.0
HE1' C17 C16 HE2' 240.9 120.0
N4 C15 C16 N5 345.2 356.3
N4 C15 C16 HF' 225.4 235.6
C23 C22 N6 C24 356.4 359.9
C21 C22 N6 C24 175.7 179.8
N6 C24 C25 C26 169.9 179.7
N6 C24 C25 N7 352.3 359.6
C26 C25 C24 N7 177.6 180.1
C24 C25 C26 O7 180.9 179.7
C14 C13 C12 O3 356.9 0.2
C14 C13 C12 N3 174.7 180.1
N4 C13 C12 O3 181.7 180.3
C27 C26 C25 N7 169.8 179.9
C25 C26 C27 O7 189.7 179.9
N3 C12 C13 O3 177.8 179.9
C17 C18 C19 HC2' 52.2 60.0
C17 C18 C19 HC1' 292.5 300.0
C19 C18 C17 HD1' 120.5 120.0
C19 C18 C17 HD2' 239.5 240.0
C16 C17 C18 HE1' 120.5 240.0
C16 C17 C18 HE2' 239.6 120.0
HD1' C18 C17 HD2' 119.0 120.0
HE1' C17 C18 HE2' 119.1 240.0
C24 C25 C26 N7 182.1 179.9
C27 C26 C25 O7 171.0 180.1
C24 C25 N7 C26 177.9 180.1
N7 C25 C26 O7 358.8 359.8
O7 C26 C25 N7 358.8 359.8
C13 C12 O3 N3 177.9 179.9
C12 O3 C11 HI 178.6 180.2
C13 C12 N3 O3 182.1 180.1
N3 C10 C9 N2 358.9 0.5
N3 C10 C9 O2 183.2 180.4
C30 C29 C28 N8 176.7 179.6
C28 C29 C30 O8 183.1 180.2
C11 C10 C9 N2 178.1 180.5
C11 C10 C9 O2 2.4 0.4
N2 C9 C10 O2 175.7 180.1
C28 C29 N8 C30 177.1 179.6
N8 C29 C30 O8 0.4 359.8
C29 N8 C32 O8 2.0 360.0
C28 C29 C30 N8 182.7 180.4
C31 C30 C29 O8 179.2 180.3
C32 O8 C30 C29 0.8 0.2
C10 C9 N2 O2 184.2 179.9
C10 C9 O2 N2 175.8 180.1
C9 O2 C8 HH 179.7 179.9
C31 C30 C29 N8 179.5 180.1
C29 C30 C31 O8 180.9 179.6
C32 O8 C30 C31 181.5 179.9
N8 C32 O8 C30 358.2 359.9
C5 C32 N8 O8 187.1 179.8
N8 C32 C5 HF 221.6 236.6
N2 C7 C8 HH 180.6 180.0
N2 C7 C6 O1 178.3 180.3
O8 C30 C29 N8 0.4 359.8
C5 C32 O8 C30 171.7 180.1
C7 C8 O2 HH 180.0 179.9
O2 C8 C7 HH 180.0 180.1
C8 C7 C6 O1 354.1 0.3
N1 C6 C7 O1 176.7 180.0
C29 C30 O8 C32 0.8 0.2
C31 C30 O8 C32 181.5 179.9
O8 C32 C5 C4 290.7 295.9
O8 C32 C5 HF 48.9 56.3
N8 C32 C5 O8 172.7 180.3
N1 C5 C32 HF 120.0 119.9
C32 C5 C4 C3 167.1 299.2
C4 C5 C32 HF 241.8 239.6
C32 C5 C4 HE1 288.0 59.2
C32 C5 C4 HE2 46.1 179.1
C7 C6 N1 O1 183.1 180.0
C6 N1 C5 HF 325.6 304.0
N1 C5 C32 O8 168.8 176.2
C32 C5 N1 HF 240.4 240.2
C4 C5 N1 HF 119.9 120.5
N1 C5 C4 HE1 48.8 178.3
N1 C5 C4 HE2 166.9 298.2
C4 C5 C32 O8 290.7 295.9
C32 C5 C4 HF 118.6 120.4
N1 C5 C4 HF 239.4 239.5
C5 C4 C3 HD2 57.4 65.1
C5 C4 C3 HD1 176.6 305.1
HE1 C4 C5 HE2 241.8 240.1
C3 C4 C5 HF 48.5 178.8
C5 C4 C3 HE1 120.9 120.0
C5 C4 C3 HE2 239.1 240.0
C4 C3 C2 HC2 282.6 59.9
C4 C3 C2 HC1 41.7 300.0
C2 C3 C4 HD2 239.6 120.0
C2 C3 C4 HD1 120.4 240.1
HD2 C3 C4 HD1 240.8 120.0
C5 C4 C3 C2 297.0 185.2
C4 C3 C2 HD2 120.4 239.9
C4 C3 C2 HD1 239.6 120.0
C3 C2 C1 HB2 59.4 300.0
C3 C2 C1 HB1 178.8 60.0
HC2 C2 C3 HC1 240.9 120.0
HD2 C3 C2 HD1 119.2 240.0
N9 C1 C2 HB2 239.7 240.0
N9 C1 C2 HB1 120.3 120.0
HB2 C1 C2 HB1 240.6 240.0
C2 C1 N9 HB2 120.3 120.0
C2 C1 N9 HB1 239.7 240.0
HB2 C1 N9 HB1 119.4 120.0
C2 C1 HB2 HB1 119.2 120.0
N9 C1 HB2 HB1 240.8 240.0
C2 C1 HB1 HB2 240.9 239.9
N9 C1 HB1 HB2 119.2 120.0
C3 C2 HC2 HC1 118.6 240.1
HC2 C2 C3 HD2 162.2 180.0
HC2 C2 C3 HD1 43.0 300.0
HC2 C2 C1 HB2 298.9 60.0
HC2 C2 C1 HB1 58.4 180.0
C3 C2 HC1 HC2 241.4 120.0
HC1 C2 C3 HD2 281.3 60.0
HC1 C2 C3 HD1 162.1 180.0
HC1 C2 C1 HB2 179.9 180.0
HC1 C2 C1 HB1 299.3 300.1
HF C5 C32 O8 48.9 56.3
C32 C5 HF C4 241.4 239.6
HF C5 C4 C3 48.5 178.8
HF C5 C4 HE1 169.4 298.8
HF C5 C4 HE2 287.6 58.7
C4 C3 HD2 HD1 118.8 240.0
HD2 C3 C2 HC2 162.2 180.0
HD2 C3 C2 HC1 281.3 60.0
C2 C3 HD2 HD1 241.2 119.9
C4 C3 HD1 HD2 241.2 120.0
HD1 C3 C2 HC2 43.0 300.0
HD1 C3 C2 HC1 162.1 180.0
C2 C3 HD1 HD2 118.8 240.0
N10 C20 HB2' HB1' 118.0 240.0
HB2' C20 C19 C18 88.2 300.0
C19 C20 HB2' HB1' 242.0 120.0
HB2' C20 C19 HC2' 208.3 60.0
HB2' C20 C19 HC1' 328.0 180.0
N10 C20 HB1' HB2' 242.0 120.1
HB1' C20 C19 C18 329.5 60.1
C19 C20 HB1' HB2' 118.0 240.0
HB1' C20 C19 HC2' 89.6 180.0
HB1' C20 C19 HC1' 209.2 300.0
C20 C19 HC2' C18 238.9 240.0
HC2' C19 C20 HB2' 208.3 60.0
HC2' C19 C20 HB1' 89.6 180.0
C20 C19 HC2' HC1' 119.5 120.0
HC2' C19 C18 C17 52.2 60.0
C18 C19 HC2' HC1' 240.5 240.0
HC2' C19 C18 HD1' 172.7 180.0
HC2' C19 C18 HD2' 291.6 300.0
C20 C19 HC1' C18 121.1 120.0
HC1' C19 C20 HB2' 328.0 180.0
HC1' C19 C20 HB1' 209.2 300.0
C20 C19 HC1' HC2' 240.5 240.0
HC1' C19 C18 C17 292.5 300.0
C18 C19 HC1' HC2' 119.4 120.0
HC1' C19 C18 HD1' 53.0 60.0
HC1' C19 C18 HD2' 172.0 180.0
C19 C18 HD1' C17 236.8 240.0
HD1' C18 C19 HC2' 172.7 180.0
HD1' C18 C19 HC1' 53.0 60.0
C19 C18 HD1' HD2' 118.4 120.0
C17 C18 HD1' HD2' 241.6 240.0
HD1' C18 C17 HE1' 44.3 185.1
HD1' C18 C17 HE2' 285.2 305.1
C19 C18 HD2' C17 123.2 120.0
HD2' C18 C19 HC2' 291.6 300.0
HD2' C18 C19 HC1' 172.0 180.0
C19 C18 HD2' HD1' 241.6 240.0
C17 C18 HD2' HD1' 118.4 120.0
HD2' C18 C17 HE1' 285.3 65.1
HD2' C18 C17 HE2' 166.2 185.1
HL C23 C22 N6 184.0 180.2
C5 C4 HE1 C3 234.3 240.0
HE1 C4 C5 HF 169.4 298.8
C5 C4 HE1 HE2 117.2 120.0
HE1 C4 C3 HD2 296.5 305.1
HE1 C4 C3 HD1 55.7 185.1
C5 C4 HE2 C3 125.7 120.1
HE2 C4 C5 HF 287.6 58.7
C5 C4 HE2 HE1 242.8 240.1
HE2 C4 C3 HD2 178.3 185.2
HE2 C4 C3 HD1 297.5 65.2
C16 C17 HE1' HE2' 118.6 240.0
HE1' C17 C18 HD1' 44.3 185.1
HE1' C17 C18 HD2' 285.3 65.1
C18 C17 HE1' HE2' 241.4 120.0
C16 C17 HE2' HE1' 241.4 120.0
HE2' C17 C18 HD1' 285.2 305.1
HE2' C17 C18 HD2' 166.2 185.1
C18 C17 HE2' HE1' 118.6 240.0
HN3 C31 C30 O8 0.0 270.3
HN2 C31 HN3 HN1 120.0 119.9
HN2 C31 C30 O8 120.0 30.4
HN3 C31 HN2 HN1 240.0 240.1
HN1 C31 C30 O8 240.0 150.4
HN3 C31 HN1 HN2 120.0 119.9
HM1 C27 C26 O7 360.0 270.1
HM3 C27 HM1 HM2 120.0 120.0
HM3 C27 C26 O7 120.0 30.0
HM1 C27 HM3 HM2 240.0 240.0
HM2 C27 C26 O7 240.0 150.1
HM1 C27 HM2 HM3 120.0 120.0
C15 C16 HF' N5 118.7 119.5
HF' C16 C15 N4 225.4 235.6
HF' C16 N5 HK 155.3 125.1
HF' C16 C17 HE1' 145.9 59.2
HF' C16 C17 HE2' 265.0 299.2
HA1 N9 C1 HB2 59.7 59.9
HA1 N9 C1 HB1 300.3 300.0
HA2 N9 C1 HB2 179.7 183.9
HA2 N9 C1 HB1 60.3 63.9
HA3' N10 C20 HB2' 300.6 60.0
HA3' N10 C20 HB1' 59.3 299.9
HA2' N10 C20 HB2' 60.7 184.0
HA2' N10 C20 HB1' 179.4 63.9
C21 N5 HK C16 180.0 180.0
HK N5 C16 HF' 155.3 125.1
HG N1 C6 O1 175.0 180.8
HG N1 C5 HF 145.6 124.1