Atom Nomenclature for L29

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L29

Atom Name (V3) Atom Name (V2)
O15 O15
S13 S13
O14 O14
C10 C10
C11 C11
C12 C12
C7 C7
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C8 C8
C9 C9
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
N22 N22
O22 O22
O23 O23
C24 C24
C25 C25
N26 N26
C27 C27
O28 O28
C29 C29
C30 C30
C31 C31
C32 C32
C34 C34
C33 C33
C35 C35
O36 O36
N37 N37
C38 C38
C39 C39
N40 N40
C56 C56
C57 C57
C58 C58
C59 C59
C60 C60
N61 N61
O61 O61
O62 O62
S41 S41
O43 O43
O42 O42
C45 C45
C46 C46
C47 C47
C48 C48
C49 C49
C5A C5A
C50 C50
C51 C51
C52 C52
C53 C53
C54 C54
C55 C55
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52