PDB Chemical Component L28
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L28
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C23 |
C22 |
1.516 |
1.529 |
C26 |
C5 |
1.507 |
1.507 |
O19 |
S18 |
1.435 |
1.421 |
N6 |
C5 |
1.335 |
1.343 |
N6 |
C7 |
1.337 |
1.378 |
C5 |
C4 |
1.483 |
1.382 |
C22 |
N21 |
1.465 |
1.465 |
O9 |
C8 |
1.212 |
1.217 |
O28 |
C27 |
1.223 |
1.216 |
N21 |
S18 |
1.536 |
1.656 |
N21 |
C24 |
1.463 |
1.465 |
S18 |
O20 |
1.430 |
1.421 |
S18 |
C13 |
1.621 |
1.762 |
C7 |
C8 |
1.495 |
1.468 |
C7 |
C3 |
1.499 |
1.363 |
C4 |
C27 |
1.500 |
1.474 |
C4 |
C3 |
1.401 |
1.413 |
C8 |
N10 |
1.334 |
1.348 |
C27 |
N1 |
1.412 |
1.348 |
C12 |
C13 |
1.416 |
1.382 |
C12 |
C11 |
1.409 |
1.388 |
C3 |
C2 |
1.516 |
1.507 |
C24 |
C25 |
1.516 |
1.530 |
C13 |
C14 |
1.394 |
1.383 |
N10 |
C11 |
1.377 |
1.400 |
C11 |
C16 |
1.390 |
1.394 |
C2 |
C1 |
1.521 |
1.531 |
C14 |
C15 |
1.388 |
1.382 |
C16 |
C15 |
1.395 |
1.385 |
C16 |
O17 |
1.360 |
1.360 |
C15 |
H1 |
1.080 |
1.080 |
C14 |
H2 |
1.080 |
1.080 |
C12 |
H3 |
1.080 |
1.080 |
C26 |
H4 |
1.100 |
1.090 |
C26 |
H5 |
1.100 |
1.090 |
C26 |
H6 |
1.101 |
1.090 |
C1 |
H7 |
1.100 |
1.090 |
C1 |
H8 |
1.100 |
1.090 |
C1 |
H9 |
1.100 |
1.089 |
C23 |
H10 |
1.100 |
1.090 |
C23 |
H11 |
1.100 |
1.089 |
C23 |
H12 |
1.100 |
1.090 |
C25 |
H13 |
1.100 |
1.090 |
C25 |
H14 |
1.100 |
1.090 |
C25 |
H15 |
1.101 |
1.090 |
C2 |
H16 |
1.100 |
1.089 |
C2 |
H17 |
1.100 |
1.090 |
C22 |
H18 |
1.100 |
1.090 |
C22 |
H19 |
1.100 |
1.090 |
C24 |
H20 |
1.100 |
1.090 |
C24 |
H21 |
1.100 |
1.090 |
N6 |
H22 |
1.001 |
0.970 |
N10 |
H23 |
1.000 |
0.970 |
O17 |
H24 |
0.950 |
0.967 |
N1 |
H25 |
1.000 |
0.970 |
N1 |
H26 |
1.000 |
0.970 |
Bond Angles for L28
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C23 |
C22 |
N21 |
112.4 |
109.5 |
C22 |
C23 |
H10 |
109.5 |
109.5 |
C22 |
C23 |
H11 |
109.5 |
109.5 |
C22 |
C23 |
H12 |
109.4 |
109.5 |
C23 |
C22 |
H18 |
108.8 |
109.5 |
C23 |
C22 |
H19 |
108.7 |
109.5 |
N21 |
S18 |
O19 |
111.5 |
106.4 |
O19 |
S18 |
O20 |
108.9 |
123.1 |
C5 |
C4 |
C27 |
122.1 |
126.5 |
C22 |
N21 |
S18 |
120.6 |
120.0 |
C22 |
N21 |
C24 |
118.9 |
120.0 |
N21 |
C22 |
H18 |
108.7 |
109.5 |
N21 |
C22 |
H19 |
108.7 |
109.4 |
O28 |
C27 |
N1 |
118.1 |
120.0 |
N21 |
S18 |
O20 |
110.5 |
106.4 |
N21 |
C24 |
H20 |
109.5 |
109.4 |
N21 |
C24 |
H21 |
109.5 |
109.5 |
C7 |
C8 |
N10 |
123.1 |
120.0 |
C7 |
C3 |
C2 |
127.9 |
126.5 |
C3 |
C4 |
C27 |
129.7 |
126.5 |
C4 |
C27 |
N1 |
122.0 |
120.0 |
C4 |
C3 |
C2 |
129.0 |
126.5 |
C8 |
N10 |
H23 |
116.9 |
120.0 |
C27 |
N1 |
H25 |
120.0 |
120.0 |
C27 |
N1 |
H26 |
120.0 |
120.0 |
C11 |
C12 |
C13 |
121.4 |
120.0 |
C13 |
C12 |
H3 |
119.3 |
120.1 |
C12 |
C11 |
C16 |
118.0 |
119.8 |
C11 |
C12 |
H3 |
119.3 |
120.0 |
C3 |
C2 |
C1 |
110.5 |
109.5 |
C3 |
C2 |
H16 |
109.2 |
109.5 |
C3 |
C2 |
H17 |
109.2 |
109.5 |
C24 |
C25 |
H13 |
109.5 |
109.5 |
C24 |
C25 |
H14 |
109.5 |
109.5 |
C24 |
C25 |
H15 |
109.5 |
109.5 |
C13 |
C14 |
H2 |
119.7 |
119.9 |
C11 |
C16 |
O17 |
118.9 |
120.1 |
C2 |
C1 |
H7 |
109.5 |
109.5 |
C2 |
C1 |
H8 |
109.5 |
109.4 |
C2 |
C1 |
H9 |
109.5 |
109.5 |
C14 |
C15 |
H1 |
119.8 |
120.0 |
C16 |
C15 |
H1 |
119.9 |
120.0 |
C16 |
O17 |
H24 |
109.5 |
114.0 |
H4 |
C26 |
H5 |
109.5 |
109.4 |
H4 |
C26 |
H6 |
109.5 |
109.5 |
H5 |
C26 |
H6 |
109.5 |
109.5 |
H7 |
C1 |
H8 |
109.5 |
109.5 |
H7 |
C1 |
H9 |
109.4 |
109.5 |
H8 |
C1 |
H9 |
109.5 |
109.5 |
H10 |
C23 |
H11 |
109.5 |
109.4 |
H10 |
C23 |
H12 |
109.5 |
109.4 |
H11 |
C23 |
H12 |
109.5 |
109.4 |
H13 |
C25 |
H14 |
109.5 |
109.5 |
H13 |
C25 |
H15 |
109.4 |
109.5 |
H14 |
C25 |
H15 |
109.5 |
109.5 |
H16 |
C2 |
H17 |
109.5 |
109.5 |
H18 |
C22 |
H19 |
109.5 |
109.5 |
H20 |
C24 |
H21 |
109.5 |
109.5 |
H25 |
N1 |
H26 |
120.0 |
120.0 |
Torsion Angles for L28
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C23 |
C22 |
N21 |
S18 |
241.2 |
95.1 |
C23 |
C22 |
N21 |
C24 |
64.1 |
275.0 |
N21 |
C22 |
C23 |
H18 |
239.6 |
240.0 |
N21 |
C22 |
C23 |
H19 |
120.4 |
119.9 |
H10 |
C23 |
C22 |
H11 |
240.0 |
240.0 |
H10 |
C23 |
C22 |
H12 |
120.0 |
120.0 |
H11 |
C23 |
C22 |
H12 |
240.0 |
240.0 |
H18 |
C22 |
C23 |
H19 |
240.9 |
239.9 |
C22 |
N21 |
S18 |
O19 |
35.9 |
336.4 |
N21 |
S18 |
O19 |
O20 |
122.2 |
237.1 |
N6 |
C7 |
C8 |
N10 |
154.9 |
0.1 |
C3 |
C4 |
C5 |
C27 |
180.2 |
179.7 |
C5 |
C4 |
C27 |
N1 |
184.0 |
89.6 |
C5 |
C4 |
C3 |
C2 |
179.8 |
180.3 |
N21 |
C22 |
C23 |
H10 |
180.0 |
60.0 |
N21 |
C22 |
C23 |
H11 |
300.0 |
180.0 |
N21 |
C22 |
C23 |
H12 |
60.0 |
300.0 |
C23 |
C22 |
N21 |
H18 |
120.5 |
120.1 |
C23 |
C22 |
N21 |
H19 |
239.6 |
240.0 |
C22 |
N21 |
S18 |
O20 |
157.2 |
203.5 |
C22 |
N21 |
C24 |
H20 |
193.1 |
325.0 |
C22 |
N21 |
C24 |
H21 |
313.1 |
205.0 |
H18 |
C22 |
N21 |
H19 |
119.1 |
120.0 |
O9 |
C8 |
N10 |
H23 |
168.0 |
185.6 |
C4 |
C27 |
O28 |
N1 |
180.8 |
180.0 |
O28 |
C27 |
N1 |
H25 |
0.0 |
180.1 |
O28 |
C27 |
N1 |
H26 |
180.0 |
360.0 |
O19 |
S18 |
N21 |
O20 |
238.7 |
132.9 |
C22 |
N21 |
S18 |
C24 |
183.0 |
180.0 |
S18 |
N21 |
C22 |
H18 |
120.7 |
335.0 |
S18 |
N21 |
C22 |
H19 |
1.6 |
215.0 |
S18 |
N21 |
C24 |
H20 |
16.0 |
145.0 |
S18 |
N21 |
C24 |
H21 |
136.1 |
25.0 |
C22 |
N21 |
C24 |
S18 |
177.1 |
180.0 |
C24 |
N21 |
C22 |
H18 |
303.7 |
155.0 |
C24 |
N21 |
C22 |
H19 |
184.6 |
35.0 |
N21 |
C24 |
C25 |
H13 |
180.0 |
60.0 |
N21 |
C24 |
C25 |
H14 |
300.0 |
180.0 |
N21 |
C24 |
C25 |
H15 |
60.0 |
300.0 |
H20 |
C24 |
N21 |
H21 |
240.0 |
120.0 |
N21 |
S18 |
O20 |
O19 |
237.2 |
123.0 |
S18 |
C13 |
C12 |
H3 |
359.6 |
0.3 |
S18 |
C13 |
C14 |
H2 |
0.3 |
359.7 |
C8 |
C7 |
C3 |
C2 |
2.9 |
0.0 |
C7 |
C8 |
N10 |
H23 |
345.4 |
5.5 |
C7 |
C3 |
C4 |
C27 |
180.9 |
180.0 |
C4 |
C3 |
C7 |
C2 |
179.2 |
180.0 |
C7 |
C3 |
C2 |
C1 |
91.3 |
270.0 |
C7 |
C3 |
C2 |
H16 |
211.4 |
30.0 |
C7 |
C3 |
C2 |
H17 |
331.2 |
150.0 |
O28 |
C27 |
C4 |
N1 |
179.1 |
180.0 |
C27 |
C4 |
C3 |
C2 |
0.1 |
360.0 |
C4 |
C27 |
N1 |
H25 |
179.1 |
0.1 |
C4 |
C27 |
N1 |
H26 |
359.1 |
180.0 |
C5 |
C4 |
C3 |
C27 |
179.8 |
180.3 |
C7 |
C3 |
C4 |
C2 |
180.8 |
180.0 |
C3 |
C4 |
C27 |
N1 |
3.7 |
270.0 |
C4 |
C3 |
C2 |
C1 |
272.3 |
90.0 |
C4 |
C3 |
C2 |
H16 |
32.5 |
210.0 |
C4 |
C3 |
C2 |
H17 |
152.2 |
330.0 |
H25 |
N1 |
C27 |
H26 |
180.0 |
180.1 |
C13 |
C12 |
C11 |
C16 |
358.8 |
0.3 |
C11 |
C12 |
C13 |
H3 |
180.0 |
179.8 |
C12 |
C13 |
C14 |
H2 |
178.7 |
180.0 |
C13 |
C12 |
C11 |
H3 |
180.0 |
180.2 |
C12 |
C11 |
C16 |
O17 |
180.5 |
180.0 |
C2 |
C3 |
C4 |
C27 |
0.1 |
360.0 |
C3 |
C2 |
C1 |
H7 |
180.0 |
60.0 |
C3 |
C2 |
C1 |
H8 |
300.0 |
180.0 |
C3 |
C2 |
C1 |
H9 |
60.0 |
300.0 |
H16 |
C2 |
C3 |
H17 |
240.3 |
240.0 |
H13 |
C25 |
C24 |
H14 |
240.0 |
240.0 |
H13 |
C25 |
C24 |
H15 |
120.0 |
120.0 |
H14 |
C25 |
C24 |
H15 |
240.0 |
240.0 |
C13 |
C14 |
C15 |
H1 |
181.2 |
180.0 |
N10 |
C11 |
C12 |
H3 |
359.9 |
359.8 |
N10 |
C11 |
C16 |
O17 |
359.5 |
0.3 |
C16 |
C11 |
C12 |
C13 |
358.8 |
0.3 |
C16 |
C11 |
C12 |
H3 |
178.8 |
180.1 |
C11 |
C16 |
C15 |
H1 |
178.9 |
180.0 |
C11 |
C16 |
O17 |
H24 |
180.0 |
90.0 |
C3 |
C2 |
C1 |
H16 |
120.2 |
120.0 |
C3 |
C2 |
C1 |
H17 |
239.9 |
240.0 |
H7 |
C1 |
C2 |
H8 |
240.0 |
240.0 |
H7 |
C1 |
C2 |
H9 |
120.0 |
120.0 |
H8 |
C1 |
C2 |
H9 |
240.0 |
240.0 |
C16 |
C15 |
C14 |
H1 |
180.0 |
180.3 |
C14 |
C15 |
C16 |
H1 |
180.0 |
179.7 |
O17 |
C16 |
C15 |
H1 |
359.5 |
359.9 |
H2 |
C14 |
C15 |
H1 |
1.2 |
360.0 |
C11 |
C12 |
H3 |
C13 |
180.0 |
180.2 |
H3 |
C12 |
C11 |
C16 |
178.8 |
180.1 |
H5 |
C26 |
H4 |
H6 |
120.0 |
120.0 |
H4 |
C26 |
H5 |
H6 |
240.0 |
240.0 |
H4 |
C26 |
H6 |
H5 |
120.0 |
119.9 |
C2 |
C1 |
H7 |
H8 |
120.0 |
120.0 |
C2 |
C1 |
H7 |
H9 |
240.0 |
240.0 |
H8 |
C1 |
H7 |
H9 |
120.0 |
120.0 |
C2 |
C1 |
H8 |
H7 |
240.0 |
240.0 |
C2 |
C1 |
H8 |
H9 |
120.0 |
120.0 |
H7 |
C1 |
H8 |
H9 |
240.0 |
240.0 |
C2 |
C1 |
H9 |
H7 |
120.0 |
120.0 |
C2 |
C1 |
H9 |
H8 |
240.0 |
240.0 |
H7 |
C1 |
H9 |
H8 |
120.0 |
120.0 |
H10 |
C23 |
C22 |
N21 |
180.0 |
60.0 |
C22 |
C23 |
H10 |
H11 |
120.0 |
120.0 |
C22 |
C23 |
H10 |
H12 |
240.0 |
240.0 |
H10 |
C23 |
C22 |
H18 |
300.5 |
180.0 |
H10 |
C23 |
C22 |
H19 |
59.6 |
300.1 |
H11 |
C23 |
H10 |
H12 |
120.0 |
119.9 |
H11 |
C23 |
C22 |
N21 |
300.0 |
180.0 |
C22 |
C23 |
H11 |
H10 |
240.0 |
239.9 |
C22 |
C23 |
H11 |
H12 |
120.0 |
120.0 |
H11 |
C23 |
C22 |
H18 |
60.5 |
300.0 |
H11 |
C23 |
C22 |
H19 |
179.6 |
60.1 |
H10 |
C23 |
H11 |
H12 |
240.0 |
240.1 |
H12 |
C23 |
C22 |
N21 |
60.0 |
300.0 |
C22 |
C23 |
H12 |
H10 |
120.0 |
120.1 |
C22 |
C23 |
H12 |
H11 |
240.0 |
240.0 |
H12 |
C23 |
C22 |
H18 |
180.5 |
60.0 |
H12 |
C23 |
C22 |
H19 |
299.6 |
180.0 |
H10 |
C23 |
H12 |
H11 |
120.0 |
119.9 |
C24 |
C25 |
H13 |
H14 |
120.0 |
120.0 |
C24 |
C25 |
H13 |
H15 |
240.0 |
240.0 |
H14 |
C25 |
H13 |
H15 |
120.0 |
120.0 |
C24 |
C25 |
H14 |
H13 |
240.0 |
240.0 |
C24 |
C25 |
H14 |
H15 |
120.0 |
120.0 |
H13 |
C25 |
H14 |
H15 |
240.0 |
240.0 |
C24 |
C25 |
H15 |
H13 |
120.0 |
120.0 |
C24 |
C25 |
H15 |
H14 |
240.0 |
240.0 |
H13 |
C25 |
H15 |
H14 |
120.0 |
120.0 |
C3 |
C2 |
H16 |
C1 |
239.1 |
240.0 |
C3 |
C2 |
H16 |
H17 |
119.6 |
120.0 |
H16 |
C2 |
C1 |
H7 |
59.8 |
300.0 |
H16 |
C2 |
C1 |
H8 |
179.8 |
60.0 |
H16 |
C2 |
C1 |
H9 |
299.8 |
180.0 |
C3 |
C2 |
H17 |
C1 |
120.9 |
120.0 |
C3 |
C2 |
H17 |
H16 |
240.4 |
240.0 |
H17 |
C2 |
C1 |
H7 |
300.1 |
180.0 |
H17 |
C2 |
C1 |
H8 |
60.1 |
300.0 |
H17 |
C2 |
C1 |
H9 |
180.1 |
60.0 |
C23 |
C22 |
H18 |
N21 |
237.3 |
240.0 |
H18 |
C22 |
C23 |
H10 |
300.5 |
180.0 |
H18 |
C22 |
C23 |
H11 |
60.5 |
300.0 |
H18 |
C22 |
C23 |
H12 |
180.5 |
60.0 |
C23 |
C22 |
H18 |
H19 |
118.7 |
120.0 |
H18 |
C22 |
N21 |
S18 |
120.7 |
335.0 |
H18 |
C22 |
N21 |
C24 |
303.7 |
155.0 |
N21 |
C22 |
H18 |
H19 |
241.3 |
240.1 |
C23 |
C22 |
H19 |
N21 |
122.7 |
120.0 |
H19 |
C22 |
C23 |
H10 |
59.6 |
300.1 |
H19 |
C22 |
C23 |
H11 |
179.6 |
60.1 |
H19 |
C22 |
C23 |
H12 |
299.6 |
180.0 |
C23 |
C22 |
H19 |
H18 |
241.3 |
239.9 |
H19 |
C22 |
N21 |
S18 |
1.6 |
215.0 |
H19 |
C22 |
N21 |
C24 |
184.6 |
35.0 |
N21 |
C22 |
H19 |
H18 |
118.7 |
120.0 |
N21 |
C24 |
H20 |
H21 |
120.0 |
240.0 |
H20 |
C24 |
C25 |
H13 |
60.0 |
179.9 |
H20 |
C24 |
C25 |
H14 |
180.0 |
299.9 |
H20 |
C24 |
C25 |
H15 |
300.0 |
59.9 |
N21 |
C24 |
H21 |
H20 |
240.0 |
119.9 |
H21 |
C24 |
C25 |
H13 |
300.0 |
300.0 |
H21 |
C24 |
C25 |
H14 |
60.0 |
60.0 |
H21 |
C24 |
C25 |
H15 |
180.0 |
180.0 |
C27 |
N1 |
H25 |
H26 |
180.0 |
179.9 |
C27 |
N1 |
H26 |
H25 |
180.0 |
180.1 |