PDB Chemical Component L1X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L1X
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C30 |
N34 |
1.459 |
1.465 |
N31 |
N34 |
1.345 |
1.401 |
N31 |
C10 |
1.328 |
1.302 |
N34 |
C16 |
1.361 |
1.373 |
C10 |
C13 |
1.401 |
1.416 |
C16 |
C8 |
1.371 |
1.390 |
C16 |
C13 |
1.383 |
1.408 |
F40 |
C21 |
1.348 |
1.350 |
C8 |
C14 |
1.367 |
1.387 |
C13 |
C7 |
1.396 |
1.402 |
C21 |
C6 |
1.370 |
1.385 |
C21 |
C5 |
1.362 |
1.385 |
C6 |
C2 |
1.382 |
1.382 |
C14 |
C15 |
1.438 |
1.484 |
C14 |
C20 |
1.385 |
1.403 |
C11 |
C15 |
1.418 |
1.365 |
C11 |
N32 |
1.330 |
1.349 |
C7 |
C20 |
1.383 |
1.367 |
C15 |
C12 |
1.376 |
1.409 |
C20 |
O39 |
1.383 |
1.359 |
C5 |
C1 |
1.389 |
1.381 |
N32 |
N33 |
1.329 |
1.401 |
C2 |
C17 |
1.361 |
1.389 |
C4 |
C3 |
1.391 |
1.382 |
C4 |
C19 |
1.377 |
1.387 |
C3 |
C18 |
1.384 |
1.389 |
O39 |
C19 |
1.400 |
1.360 |
C12 |
N33 |
1.369 |
1.306 |
O37 |
C27 |
1.228 |
1.218 |
C1 |
C17 |
1.385 |
1.389 |
C17 |
N35 |
1.406 |
1.401 |
C19 |
C22 |
1.374 |
1.389 |
C18 |
N36 |
1.411 |
1.401 |
C18 |
C9 |
1.371 |
1.388 |
N36 |
C28 |
1.364 |
1.348 |
C27 |
N35 |
1.375 |
1.347 |
C27 |
C25 |
1.486 |
1.418 |
N35 |
C26 |
1.394 |
1.356 |
C22 |
C9 |
1.388 |
1.382 |
C22 |
F41 |
1.355 |
1.351 |
C25 |
C28 |
1.462 |
1.471 |
C25 |
C23 |
1.350 |
1.394 |
C28 |
O38 |
1.217 |
1.218 |
C26 |
C29 |
1.492 |
1.507 |
C26 |
C24 |
1.345 |
1.358 |
C23 |
C24 |
1.432 |
1.395 |
C1 |
H1 |
1.080 |
1.080 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
H3 |
1.080 |
1.080 |
C4 |
H4 |
1.080 |
1.080 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.079 |
C7 |
H7 |
1.080 |
1.080 |
C8 |
H8 |
1.080 |
1.081 |
C9 |
H9 |
1.080 |
1.080 |
C10 |
H10 |
1.080 |
1.080 |
C11 |
H11 |
1.080 |
1.080 |
C12 |
H12 |
1.080 |
1.080 |
C23 |
H13 |
1.081 |
1.080 |
C24 |
H14 |
1.080 |
1.080 |
C29 |
H15 |
1.100 |
1.090 |
C29 |
H16 |
1.100 |
1.089 |
C29 |
H17 |
1.099 |
1.091 |
C30 |
H18 |
1.101 |
1.090 |
C30 |
H19 |
1.099 |
1.089 |
C30 |
H20 |
1.100 |
1.090 |
N32 |
H21 |
1.000 |
0.970 |
N36 |
H22 |
1.000 |
0.969 |
Bond Angles for L1X
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C30 |
N34 |
N31 |
120.9 |
125.9 |
N34 |
C30 |
H18 |
109.5 |
109.5 |
N34 |
C30 |
H19 |
109.5 |
109.4 |
N34 |
C30 |
H20 |
109.5 |
109.4 |
N31 |
C10 |
H10 |
123.9 |
125.6 |
C13 |
C10 |
H10 |
123.9 |
125.6 |
C16 |
C8 |
H8 |
123.2 |
120.2 |
C8 |
C14 |
C15 |
115.9 |
119.9 |
C8 |
C14 |
C20 |
123.0 |
120.3 |
C14 |
C8 |
H8 |
123.2 |
120.1 |
C13 |
C7 |
C20 |
114.2 |
119.9 |
C13 |
C7 |
H7 |
122.9 |
120.1 |
C21 |
C6 |
H6 |
120.8 |
120.0 |
C21 |
C5 |
H5 |
120.8 |
120.0 |
C6 |
C2 |
C17 |
118.3 |
119.9 |
C6 |
C2 |
H2 |
120.9 |
120.0 |
C15 |
C14 |
C20 |
121.1 |
119.9 |
C11 |
C15 |
C14 |
130.2 |
126.2 |
C7 |
C20 |
C14 |
123.3 |
120.5 |
C14 |
C20 |
O39 |
115.8 |
119.8 |
C15 |
C11 |
N32 |
110.6 |
107.6 |
C11 |
C15 |
C12 |
105.5 |
107.5 |
C15 |
C11 |
H11 |
124.7 |
126.2 |
C11 |
N32 |
N33 |
105.4 |
108.2 |
N32 |
C11 |
H11 |
124.7 |
126.2 |
C11 |
N32 |
H21 |
127.3 |
125.9 |
C7 |
C20 |
O39 |
120.9 |
119.7 |
C20 |
C7 |
H7 |
122.9 |
120.0 |
C15 |
C12 |
N33 |
105.3 |
108.1 |
C15 |
C12 |
H12 |
127.4 |
125.9 |
C5 |
C1 |
C17 |
117.5 |
119.9 |
C5 |
C1 |
H1 |
121.2 |
120.0 |
C12 |
N33 |
N32 |
113.3 |
108.6 |
N33 |
N32 |
H21 |
127.3 |
125.9 |
C1 |
C17 |
C2 |
123.7 |
119.9 |
C2 |
C17 |
N35 |
114.8 |
120.0 |
C17 |
C2 |
H2 |
120.9 |
120.1 |
C4 |
C3 |
C18 |
121.1 |
120.0 |
C4 |
C3 |
H3 |
119.5 |
120.0 |
C4 |
C19 |
C22 |
119.5 |
120.0 |
C19 |
C4 |
H4 |
120.3 |
120.0 |
C3 |
C18 |
N36 |
118.7 |
119.9 |
C3 |
C18 |
C9 |
119.2 |
120.0 |
C18 |
C3 |
H3 |
119.4 |
120.0 |
N33 |
C12 |
H12 |
127.4 |
126.0 |
C1 |
C17 |
N35 |
121.5 |
120.1 |
C17 |
C1 |
H1 |
121.2 |
120.0 |
C17 |
N35 |
C27 |
115.8 |
119.4 |
C17 |
N35 |
C26 |
120.2 |
119.5 |
C19 |
C22 |
F41 |
120.4 |
120.0 |
C18 |
N36 |
C28 |
125.2 |
120.0 |
C18 |
N36 |
H22 |
117.4 |
120.0 |
C18 |
C9 |
H9 |
120.1 |
120.0 |
N36 |
C28 |
O38 |
126.5 |
120.0 |
C27 |
C25 |
C28 |
124.8 |
120.5 |
C22 |
C9 |
H9 |
120.1 |
120.0 |
C25 |
C28 |
O38 |
120.0 |
120.0 |
C25 |
C23 |
H13 |
118.8 |
120.5 |
C26 |
C29 |
H15 |
109.5 |
109.5 |
C26 |
C29 |
H16 |
109.4 |
109.5 |
C26 |
C29 |
H17 |
109.5 |
109.4 |
C26 |
C24 |
H14 |
120.7 |
120.0 |
C24 |
C23 |
H13 |
118.8 |
120.5 |
C23 |
C24 |
H14 |
120.7 |
119.9 |
H15 |
C29 |
H16 |
109.5 |
109.5 |
H15 |
C29 |
H17 |
109.5 |
109.4 |
H16 |
C29 |
H17 |
109.5 |
109.5 |
H18 |
C30 |
H19 |
109.5 |
109.5 |
H18 |
C30 |
H20 |
109.5 |
109.5 |
H19 |
C30 |
H20 |
109.5 |
109.5 |
Torsion Angles for L1X
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H18 |
C30 |
N34 |
H19 |
240.0 |
240.0 |
H18 |
C30 |
N34 |
H20 |
120.0 |
120.0 |
H19 |
C30 |
N34 |
H20 |
240.0 |
240.0 |
N31 |
N34 |
C30 |
H18 |
0.0 |
90.0 |
N31 |
N34 |
C30 |
H19 |
120.0 |
210.0 |
N31 |
N34 |
C30 |
H20 |
240.0 |
330.0 |
N34 |
N31 |
C10 |
H10 |
179.8 |
180.0 |
C13 |
C10 |
N31 |
H10 |
180.0 |
180.0 |
N34 |
C16 |
C8 |
H8 |
0.9 |
359.8 |
N31 |
C10 |
C13 |
H10 |
180.0 |
180.0 |
C10 |
C13 |
C7 |
C20 |
180.6 |
180.0 |
C10 |
C13 |
C7 |
H7 |
0.6 |
359.8 |
C16 |
C8 |
C14 |
C20 |
358.7 |
359.5 |
C14 |
C8 |
C16 |
H8 |
180.0 |
180.5 |
C16 |
C13 |
C10 |
H10 |
180.7 |
180.0 |
C13 |
C16 |
C8 |
H8 |
180.9 |
179.7 |
C16 |
C13 |
C7 |
C20 |
359.5 |
360.0 |
C16 |
C13 |
C7 |
H7 |
179.5 |
179.7 |
F40 |
C21 |
C6 |
H6 |
0.4 |
359.5 |
F40 |
C21 |
C5 |
H5 |
359.2 |
0.3 |
C16 |
C8 |
C14 |
H8 |
180.0 |
179.5 |
C15 |
C14 |
C8 |
C20 |
179.6 |
180.1 |
C11 |
C15 |
C14 |
C8 |
13.3 |
309.9 |
C7 |
C20 |
C14 |
C8 |
0.8 |
0.6 |
C8 |
C14 |
C20 |
O39 |
179.9 |
180.6 |
C13 |
C7 |
C20 |
C14 |
0.2 |
359.7 |
C13 |
C7 |
C20 |
O39 |
181.2 |
179.7 |
C20 |
C7 |
C13 |
H7 |
180.0 |
180.3 |
C6 |
C21 |
C5 |
H5 |
178.8 |
180.1 |
C21 |
C6 |
C2 |
H2 |
179.9 |
180.0 |
C21 |
C5 |
C1 |
H1 |
181.0 |
179.7 |
C1 |
C17 |
C2 |
C6 |
0.0 |
0.5 |
C6 |
C2 |
C17 |
N35 |
181.6 |
180.5 |
C17 |
C2 |
C6 |
H2 |
180.0 |
179.5 |
C8 |
C14 |
C15 |
C20 |
180.4 |
179.9 |
C15 |
C14 |
C8 |
H8 |
358.3 |
0.1 |
C7 |
C20 |
C14 |
C15 |
181.2 |
180.5 |
C15 |
C14 |
C20 |
O39 |
0.3 |
0.5 |
C14 |
C15 |
C11 |
N32 |
179.5 |
180.0 |
C11 |
C15 |
C14 |
C12 |
180.5 |
180.0 |
C14 |
C15 |
C11 |
H11 |
359.5 |
359.7 |
C14 |
C15 |
C12 |
N33 |
180.1 |
180.0 |
C14 |
C15 |
C12 |
H12 |
0.0 |
360.0 |
C8 |
C14 |
C20 |
C15 |
179.6 |
180.1 |
C20 |
C14 |
C8 |
H8 |
178.7 |
180.0 |
C11 |
C15 |
C14 |
C20 |
193.0 |
130.0 |
C7 |
C20 |
C14 |
O39 |
181.0 |
180.0 |
C14 |
C20 |
C7 |
H7 |
180.2 |
180.0 |
C8 |
C14 |
C15 |
C11 |
13.3 |
309.9 |
C15 |
C11 |
N32 |
N33 |
0.5 |
0.0 |
N32 |
C11 |
C15 |
H11 |
180.0 |
180.3 |
C15 |
C11 |
N32 |
H21 |
180.5 |
180.0 |
C11 |
C15 |
C12 |
N33 |
359.7 |
0.0 |
C11 |
C15 |
C12 |
H12 |
179.6 |
180.0 |
N32 |
C11 |
C15 |
C14 |
179.5 |
180.0 |
N32 |
C11 |
C15 |
C12 |
359.9 |
360.0 |
C15 |
C11 |
N32 |
H11 |
180.0 |
179.7 |
C12 |
N33 |
N32 |
C11 |
359.3 |
0.0 |
N33 |
N32 |
C11 |
H21 |
180.0 |
180.0 |
C8 |
C14 |
C20 |
C7 |
0.8 |
0.6 |
C13 |
C7 |
C20 |
H7 |
180.0 |
179.7 |
C15 |
C14 |
C20 |
C7 |
181.2 |
180.5 |
C14 |
C20 |
C7 |
O39 |
179.0 |
180.0 |
C8 |
C14 |
C15 |
C12 |
192.9 |
130.0 |
C11 |
C15 |
C12 |
C14 |
179.6 |
180.0 |
C12 |
C15 |
C11 |
N32 |
359.9 |
360.0 |
C12 |
C15 |
C11 |
H11 |
179.9 |
179.7 |
C15 |
C12 |
N33 |
N32 |
0.7 |
360.0 |
N33 |
C12 |
C15 |
H12 |
180.0 |
180.0 |
C7 |
C20 |
O39 |
C14 |
179.1 |
180.0 |
O39 |
C20 |
C7 |
H7 |
1.2 |
360.0 |
C5 |
C1 |
C17 |
C2 |
359.6 |
359.7 |
C5 |
C1 |
C17 |
N35 |
177.9 |
179.7 |
C17 |
C1 |
C5 |
H1 |
180.0 |
180.3 |
N33 |
N32 |
C11 |
H11 |
180.5 |
180.3 |
C11 |
N32 |
N33 |
H21 |
180.0 |
180.0 |
N32 |
N33 |
C12 |
H12 |
180.7 |
180.0 |
C6 |
C2 |
C17 |
H2 |
180.0 |
180.5 |
C1 |
C17 |
C2 |
N35 |
178.4 |
180.0 |
C2 |
C17 |
C1 |
H1 |
179.6 |
180.1 |
C2 |
C17 |
N35 |
C27 |
72.4 |
106.3 |
C2 |
C17 |
N35 |
C26 |
254.4 |
285.5 |
C4 |
C3 |
C18 |
N36 |
181.8 |
179.7 |
C4 |
C3 |
C18 |
C9 |
0.6 |
359.6 |
C18 |
C3 |
C4 |
H3 |
180.0 |
180.3 |
C19 |
C4 |
C3 |
C18 |
359.4 |
0.1 |
C19 |
C4 |
C3 |
H3 |
179.4 |
179.7 |
C4 |
C19 |
C22 |
F41 |
179.7 |
180.0 |
C4 |
C3 |
C18 |
H3 |
180.0 |
179.7 |
C3 |
C18 |
N36 |
C28 |
198.9 |
212.1 |
C3 |
C18 |
N36 |
H22 |
18.9 |
32.1 |
C3 |
C18 |
C9 |
H9 |
180.2 |
180.0 |
C14 |
C20 |
O39 |
C19 |
152.1 |
178.5 |
C7 |
C20 |
O39 |
C19 |
331.1 |
358.5 |
O39 |
C19 |
C4 |
H4 |
1.7 |
360.0 |
O39 |
C19 |
C22 |
F41 |
357.9 |
0.0 |
C11 |
N32 |
N33 |
C12 |
359.3 |
0.0 |
C15 |
C12 |
N33 |
H12 |
180.0 |
180.0 |
C12 |
N33 |
N32 |
H21 |
179.3 |
180.0 |
C6 |
C2 |
C17 |
C1 |
0.0 |
0.5 |
C5 |
C1 |
C17 |
H1 |
180.0 |
179.7 |
C2 |
C17 |
C1 |
N35 |
181.7 |
180.0 |
C1 |
C17 |
C2 |
H2 |
180.0 |
180.0 |
C1 |
C17 |
N35 |
C27 |
253.9 |
286.3 |
C1 |
C17 |
N35 |
C26 |
75.9 |
105.5 |
C1 |
C17 |
N35 |
C2 |
181.5 |
180.0 |
N35 |
C17 |
C2 |
H2 |
1.5 |
0.0 |
N35 |
C17 |
C1 |
H1 |
357.9 |
0.0 |
C22 |
C19 |
C4 |
H4 |
179.8 |
180.0 |
C19 |
C22 |
C9 |
H9 |
179.1 |
180.0 |
C3 |
C18 |
N36 |
C9 |
178.8 |
179.9 |
N36 |
C18 |
C3 |
H3 |
1.8 |
0.1 |
N36 |
C18 |
C9 |
H9 |
358.9 |
359.9 |
C18 |
N36 |
C28 |
O38 |
349.2 |
7.3 |
C3 |
C18 |
C9 |
N36 |
181.3 |
180.1 |
C9 |
C18 |
C3 |
H3 |
180.6 |
180.0 |
C22 |
C9 |
C18 |
H9 |
180.0 |
180.6 |
C18 |
N36 |
C28 |
H22 |
180.0 |
180.0 |
C25 |
C28 |
N36 |
O38 |
188.3 |
180.0 |
C17 |
N35 |
C27 |
C26 |
182.1 |
179.2 |
N35 |
C27 |
C25 |
C28 |
179.2 |
179.5 |
C17 |
N35 |
C27 |
C25 |
179.7 |
180.0 |
C27 |
C25 |
C28 |
O38 |
183.4 |
186.4 |
C27 |
C25 |
C23 |
H13 |
180.6 |
180.3 |
C17 |
N35 |
C26 |
C27 |
177.8 |
180.8 |
N35 |
C26 |
C29 |
H15 |
180.0 |
182.7 |
N35 |
C26 |
C29 |
H16 |
300.0 |
302.8 |
N35 |
C26 |
C29 |
H17 |
60.0 |
62.7 |
N35 |
C26 |
C24 |
H14 |
178.4 |
180.0 |
C4 |
C19 |
C22 |
C9 |
0.9 |
0.3 |
C18 |
C9 |
C22 |
H9 |
180.0 |
179.4 |
F41 |
C22 |
C9 |
H9 |
0.2 |
0.4 |
C18 |
N36 |
C28 |
C25 |
177.5 |
187.3 |
N36 |
C28 |
C25 |
O38 |
172.3 |
180.0 |
C28 |
C25 |
C23 |
H13 |
1.9 |
0.2 |
C24 |
C23 |
C25 |
H13 |
180.0 |
179.7 |
C25 |
C23 |
C24 |
H14 |
179.9 |
180.2 |
C17 |
N35 |
C26 |
C29 |
359.6 |
0.3 |
C29 |
C26 |
C24 |
H14 |
359.7 |
0.0 |
H15 |
C29 |
C26 |
H16 |
240.0 |
239.9 |
H15 |
C29 |
C26 |
H17 |
120.0 |
119.9 |
H16 |
C29 |
C26 |
H17 |
240.0 |
240.0 |
C17 |
N35 |
C26 |
C24 |
180.8 |
180.3 |
C26 |
C24 |
C23 |
H13 |
179.9 |
180.0 |
C23 |
C24 |
C26 |
H14 |
180.0 |
179.9 |
C25 |
C23 |
C24 |
H13 |
180.0 |
180.3 |
C26 |
C24 |
C23 |
H14 |
180.0 |
180.1 |
C5 |
C1 |
H1 |
C17 |
180.0 |
180.3 |
H1 |
C1 |
C17 |
C2 |
179.6 |
180.1 |
H1 |
C1 |
C17 |
N35 |
357.9 |
0.0 |
C6 |
C2 |
H2 |
C17 |
180.0 |
179.5 |
H2 |
C2 |
C17 |
N35 |
1.5 |
0.0 |
C4 |
C3 |
H3 |
C18 |
180.0 |
180.3 |
H3 |
C3 |
C18 |
N36 |
1.8 |
0.1 |
H3 |
C3 |
C18 |
C9 |
180.6 |
180.0 |
H4 |
C4 |
C3 |
C18 |
179.4 |
180.0 |
H4 |
C4 |
C3 |
H3 |
359.4 |
359.7 |
H4 |
C4 |
C19 |
C22 |
179.8 |
180.0 |
H5 |
C5 |
C1 |
C17 |
181.0 |
180.0 |
H5 |
C5 |
C1 |
H1 |
1.0 |
359.6 |
H6 |
C6 |
C2 |
C17 |
179.8 |
180.0 |
H6 |
C6 |
C2 |
H2 |
359.8 |
0.5 |
C13 |
C7 |
H7 |
C20 |
180.0 |
180.3 |
H7 |
C7 |
C20 |
C14 |
180.2 |
180.0 |
H7 |
C7 |
C20 |
O39 |
1.2 |
360.0 |
H8 |
C8 |
C14 |
C15 |
358.3 |
0.1 |
H8 |
C8 |
C14 |
C20 |
178.7 |
180.0 |
H11 |
C11 |
C15 |
C14 |
359.5 |
359.7 |
C15 |
C11 |
H11 |
N32 |
180.0 |
180.3 |
H11 |
C11 |
C15 |
C12 |
179.9 |
179.7 |
H11 |
C11 |
N32 |
N33 |
180.5 |
180.3 |
H11 |
C11 |
N32 |
H21 |
0.5 |
0.3 |
C15 |
C12 |
H12 |
N33 |
180.0 |
180.0 |
H12 |
C12 |
N33 |
N32 |
180.7 |
180.0 |
H13 |
C23 |
C24 |
H14 |
359.9 |
359.9 |
H14 |
C24 |
C23 |
H13 |
359.9 |
359.9 |
C26 |
C29 |
H15 |
H16 |
120.0 |
120.0 |
C26 |
C29 |
H15 |
H17 |
240.0 |
240.1 |
H16 |
C29 |
H15 |
H17 |
120.0 |
120.0 |
C26 |
C29 |
H16 |
H15 |
240.0 |
240.0 |
C26 |
C29 |
H16 |
H17 |
120.0 |
120.0 |
H15 |
C29 |
H16 |
H17 |
240.0 |
240.0 |
C26 |
C29 |
H17 |
H15 |
120.0 |
119.9 |
C26 |
C29 |
H17 |
H16 |
240.0 |
240.0 |
H15 |
C29 |
H17 |
H16 |
120.0 |
120.1 |
H18 |
C30 |
N34 |
N31 |
0.0 |
90.0 |
N34 |
C30 |
H18 |
H19 |
120.0 |
120.0 |
N34 |
C30 |
H18 |
H20 |
240.0 |
240.0 |
H19 |
C30 |
H18 |
H20 |
120.0 |
120.1 |
H19 |
C30 |
N34 |
N31 |
120.0 |
210.0 |
N34 |
C30 |
H19 |
H18 |
240.0 |
240.0 |
N34 |
C30 |
H19 |
H20 |
120.0 |
120.0 |
H18 |
C30 |
H19 |
H20 |
240.0 |
240.0 |
H20 |
C30 |
N34 |
N31 |
240.0 |
330.0 |
N34 |
C30 |
H20 |
H18 |
120.0 |
120.0 |
N34 |
C30 |
H20 |
H19 |
240.0 |
240.0 |
H18 |
C30 |
H20 |
H19 |
120.0 |
120.0 |
C11 |
N32 |
H21 |
N33 |
180.0 |
180.0 |
H21 |
N32 |
C11 |
H11 |
0.5 |
0.3 |
C18 |
N36 |
H22 |
C28 |
180.0 |
180.0 |
H22 |
N36 |
C28 |
O38 |
169.2 |
187.3 |