Atom Nomenclature for L10

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L10

Atom Name (V3) Atom Name (V2)
CL16 CL16
C15 C15
C14 C14
C13 C13
C17 C17
C18 C18
C12 C12
N11 N11
C9 C9
O10 O10
N8 N8
C7 C7
C6 C6
N19 N19
N20 N20
C5 C5
C2 C2
C4 C4
C3 C3
C1 C1
C21 C21
C26 C26
C25 C25
C24 C24
C23 C23
C22 C22
H14 H14
H13 H13
H17 H17
H18 H18
H11 H11
H6 H6
H20 H20
H4C1 1H4C
H4C2 2H4C
H4C3 3H4C
H3C1 1H3C
H3C2 2H3C
H3C3 3H3C
H1C1 1H1C
H1C2 2H1C
H1C3 3H1C
H26 H26
H25 H25
H24 H24
H23 H23
H22 H22