PDB Chemical Component L0I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L0I
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
O1 |
1.209 |
1.217 |
| N3 |
C2 |
1.339 |
1.347 |
| C2 |
N7 |
1.322 |
1.347 |
| C4 |
N3 |
1.436 |
1.465 |
| N3 |
H32 |
1.000 |
0.969 |
| C5 |
C4 |
1.495 |
1.530 |
| C6 |
C4 |
1.497 |
1.530 |
| H33 |
C4 |
1.100 |
1.089 |
| H34 |
C5 |
1.100 |
1.091 |
| C5 |
H35 |
1.100 |
1.089 |
| C5 |
C6 |
1.486 |
1.530 |
| H37 |
C6 |
1.100 |
1.090 |
| C6 |
H36 |
1.100 |
1.090 |
| H38 |
N7 |
1.000 |
0.970 |
| N7 |
C8 |
1.366 |
1.406 |
| C13 |
C8 |
1.378 |
1.414 |
| C8 |
C9 |
1.358 |
1.355 |
| C9 |
N10 |
1.338 |
1.359 |
| C9 |
H39 |
1.080 |
1.080 |
| N12 |
N10 |
1.354 |
1.400 |
| N10 |
H11 |
1.000 |
0.970 |
| C13 |
N12 |
1.331 |
1.319 |
| C14 |
C13 |
1.440 |
1.478 |
| N15 |
C14 |
1.334 |
1.311 |
| C14 |
N30 |
1.349 |
1.369 |
| C16 |
N15 |
1.342 |
1.355 |
| C17 |
C16 |
1.389 |
1.399 |
| C16 |
C29 |
1.392 |
1.406 |
| H40 |
C17 |
1.080 |
1.079 |
| C18 |
C17 |
1.380 |
1.377 |
| H41 |
C18 |
1.080 |
1.080 |
| C18 |
C19 |
1.397 |
1.387 |
| C20 |
C19 |
1.517 |
1.507 |
| C19 |
C28 |
1.390 |
1.380 |
| N21 |
C20 |
1.503 |
1.469 |
| H43 |
C20 |
1.100 |
1.090 |
| C20 |
H42 |
1.100 |
1.090 |
| H22 |
N21 |
1.000 |
1.010 |
| C27 |
N21 |
1.501 |
1.470 |
| N21 |
C23 |
1.505 |
1.469 |
| C24 |
C23 |
1.530 |
1.531 |
| C23 |
H44 |
1.100 |
1.090 |
| C23 |
H45 |
1.100 |
1.090 |
| H46 |
C24 |
1.100 |
1.090 |
| O25 |
C24 |
1.444 |
1.430 |
| C24 |
H47 |
1.100 |
1.090 |
| C26 |
O25 |
1.440 |
1.430 |
| H48 |
C26 |
1.100 |
1.090 |
| H49 |
C26 |
1.100 |
1.090 |
| C26 |
C27 |
1.526 |
1.531 |
| H51 |
C27 |
1.100 |
1.090 |
| C27 |
H50 |
1.100 |
1.090 |
| C28 |
C29 |
1.390 |
1.387 |
| C28 |
H52 |
1.080 |
1.079 |
| C29 |
N30 |
1.366 |
1.382 |
| N30 |
H31 |
1.000 |
0.970 |
Bond Angles for L0I
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N7 |
105.0 |
120.0 |
| C2 |
N7 |
C8 |
132.9 |
120.0 |
| C4 |
N3 |
H32 |
117.3 |
120.0 |
| H34 |
C5 |
H35 |
75.0 |
115.5 |
| C6 |
C5 |
H35 |
135.8 |
117.5 |
| C5 |
C6 |
H36 |
135.9 |
117.5 |
| N7 |
C8 |
C9 |
132.4 |
126.1 |
| C8 |
C9 |
N10 |
106.3 |
107.8 |
| C8 |
C9 |
H39 |
126.8 |
126.1 |
| N10 |
C9 |
H39 |
126.8 |
126.1 |
| C9 |
N10 |
H11 |
124.2 |
125.9 |
| N12 |
N10 |
H11 |
124.2 |
125.9 |
| N15 |
C14 |
N30 |
111.4 |
109.8 |
| C14 |
N30 |
C29 |
107.1 |
107.2 |
| C14 |
N30 |
H31 |
126.5 |
126.4 |
| C17 |
C16 |
C29 |
119.2 |
119.4 |
| C16 |
C29 |
C28 |
122.4 |
120.0 |
| C16 |
C29 |
N30 |
105.6 |
106.2 |
| C18 |
C19 |
C28 |
119.3 |
120.5 |
| C20 |
C19 |
C28 |
120.7 |
119.8 |
| C19 |
C28 |
C29 |
118.2 |
119.8 |
| C19 |
C28 |
H52 |
120.9 |
120.0 |
| N21 |
C20 |
H42 |
104.5 |
109.4 |
| N21 |
C23 |
H44 |
108.4 |
109.5 |
| N21 |
C23 |
H45 |
107.7 |
109.5 |
| C24 |
C23 |
H44 |
108.4 |
109.5 |
| C24 |
C23 |
H45 |
107.6 |
109.5 |
| H44 |
C23 |
H45 |
112.1 |
109.5 |
| H46 |
C24 |
H47 |
113.1 |
109.5 |
| O25 |
C24 |
H47 |
106.9 |
109.5 |
| C26 |
C27 |
H50 |
109.4 |
109.5 |
| C29 |
C28 |
H52 |
120.9 |
120.1 |
| C28 |
C29 |
N30 |
132.0 |
133.8 |
| C29 |
N30 |
H31 |
126.5 |
126.4 |
Torsion Angles for L0I
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N7 |
C8 |
175.9 |
179.7 |
| C2 |
N7 |
C8 |
C9 |
32.5 |
359.9 |
| C4 |
N3 |
C2 |
N7 |
234.5 |
180.3 |
| H32 |
N3 |
C2 |
N7 |
54.5 |
0.4 |
| C5 |
C4 |
N3 |
H32 |
277.0 |
334.9 |
| C6 |
C4 |
N3 |
H32 |
342.5 |
43.6 |
| C6 |
C5 |
H34 |
H35 |
221.5 |
214.3 |
| H34 |
C5 |
C6 |
H36 |
6.7 |
145.0 |
| H35 |
C5 |
C6 |
H36 |
253.4 |
0.0 |
| H34 |
C5 |
C6 |
H35 |
113.3 |
145.0 |
| H36 |
C6 |
C5 |
H35 |
253.4 |
0.0 |
| N7 |
C8 |
C9 |
N10 |
177.0 |
180.0 |
| N7 |
C8 |
C9 |
H39 |
357.0 |
0.0 |
| C13 |
C8 |
C9 |
H39 |
181.6 |
180.2 |
| N10 |
C9 |
C8 |
H39 |
180.0 |
180.0 |
| C8 |
C9 |
N10 |
H11 |
179.1 |
180.0 |
| C8 |
C9 |
N10 |
H39 |
180.0 |
180.0 |
| N12 |
N10 |
C9 |
H11 |
180.0 |
180.0 |
| C8 |
C9 |
H39 |
N10 |
180.0 |
180.0 |
| H39 |
C9 |
N10 |
H11 |
359.0 |
0.0 |
| N12 |
N10 |
C9 |
H39 |
179.1 |
180.0 |
| C9 |
N10 |
N12 |
H11 |
180.0 |
180.0 |
| H11 |
N10 |
C9 |
H39 |
359.0 |
0.0 |
| C13 |
N12 |
N10 |
H11 |
179.8 |
179.7 |
| N15 |
C14 |
N30 |
C29 |
0.9 |
359.6 |
| N15 |
C14 |
N30 |
H31 |
180.9 |
179.7 |
| C16 |
C29 |
N30 |
C14 |
359.1 |
0.4 |
| C28 |
C29 |
N30 |
C14 |
179.7 |
180.1 |
| C29 |
N30 |
C14 |
H31 |
180.0 |
179.9 |
| C16 |
N15 |
C14 |
N30 |
359.4 |
0.3 |
| C17 |
C16 |
C29 |
C28 |
359.6 |
0.0 |
| C17 |
C16 |
C29 |
N30 |
180.2 |
179.8 |
| C14 |
N30 |
C29 |
C16 |
359.1 |
0.4 |
| C19 |
C28 |
C29 |
C16 |
0.5 |
0.0 |
| C16 |
C29 |
C28 |
H52 |
180.5 |
180.0 |
| C28 |
C29 |
C16 |
N30 |
179.5 |
180.2 |
| C16 |
C29 |
N30 |
H31 |
179.1 |
180.3 |
| C18 |
C17 |
C16 |
C29 |
0.4 |
360.0 |
| C20 |
C19 |
C18 |
C28 |
177.4 |
179.9 |
| C18 |
C19 |
C28 |
C29 |
359.2 |
360.0 |
| C18 |
C19 |
C28 |
H52 |
179.3 |
180.0 |
| C18 |
C19 |
C20 |
C28 |
182.6 |
180.1 |
| C20 |
C19 |
C28 |
C29 |
181.8 |
180.0 |
| C20 |
C19 |
C28 |
H52 |
1.9 |
0.1 |
| C16 |
C29 |
C28 |
C19 |
0.5 |
0.0 |
| C29 |
C28 |
C19 |
H52 |
180.0 |
180.0 |
| C19 |
C28 |
C29 |
N30 |
179.9 |
180.3 |
| N21 |
C20 |
C19 |
C28 |
288.0 |
270.0 |
| H42 |
C20 |
C19 |
C28 |
172.3 |
29.9 |
| H22 |
N21 |
C20 |
H42 |
62.1 |
294.9 |
| H22 |
N21 |
C23 |
H44 |
50.8 |
60.0 |
| H22 |
N21 |
C23 |
H45 |
172.3 |
180.1 |
| C27 |
N21 |
C20 |
H42 |
303.5 |
175.0 |
| C27 |
N21 |
C23 |
H44 |
169.5 |
180.0 |
| C27 |
N21 |
C23 |
H45 |
291.0 |
300.0 |
| C23 |
N21 |
C20 |
H42 |
178.8 |
55.0 |
| C24 |
C23 |
N21 |
H44 |
240.0 |
240.0 |
| C24 |
C23 |
N21 |
H45 |
118.6 |
120.0 |
| H44 |
C23 |
N21 |
H45 |
238.6 |
240.0 |
| N21 |
C23 |
C24 |
H44 |
120.0 |
120.0 |
| N21 |
C23 |
C24 |
H45 |
241.4 |
240.0 |
| H44 |
C23 |
C24 |
H45 |
121.4 |
120.0 |
| N21 |
C23 |
H44 |
H45 |
118.7 |
120.0 |
| C24 |
C23 |
H44 |
H45 |
241.4 |
240.0 |
| N21 |
C23 |
H45 |
H44 |
240.9 |
240.0 |
| C24 |
C23 |
H45 |
H44 |
119.1 |
120.0 |
| O25 |
C24 |
H46 |
H47 |
241.9 |
239.9 |
| O25 |
C24 |
C23 |
H44 |
191.4 |
182.4 |
| O25 |
C24 |
C23 |
H45 |
70.0 |
62.3 |
| H46 |
C24 |
O25 |
H47 |
122.0 |
120.1 |
| H47 |
C24 |
C23 |
H44 |
73.5 |
62.4 |
| H47 |
C24 |
C23 |
H45 |
312.1 |
302.4 |
| C26 |
O25 |
C24 |
H47 |
170.0 |
177.8 |
| H48 |
C26 |
C27 |
H50 |
60.3 |
177.8 |
| H49 |
C26 |
C27 |
H50 |
299.0 |
57.7 |
| C14 |
N30 |
C29 |
C28 |
179.7 |
180.1 |
| C16 |
C29 |
C28 |
N30 |
180.7 |
179.7 |
| C19 |
C28 |
C29 |
H52 |
180.0 |
180.0 |
| C28 |
C29 |
N30 |
H31 |
359.7 |
0.0 |
| C19 |
C28 |
H52 |
C29 |
180.0 |
180.0 |
| H52 |
C28 |
C29 |
N30 |
359.8 |
0.2 |
| C14 |
N30 |
C29 |
H31 |
180.0 |
180.1 |
| C16 |
C29 |
N30 |
C28 |
179.4 |
180.3 |
| N30 |
C29 |
C28 |
H52 |
359.8 |
0.2 |
| C14 |
N30 |
H31 |
C29 |
180.0 |
179.9 |